Ggra9813.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9813.t1
Unique Name	Ggra9813.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	608

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000236_pilon	contig	tig00000236_pilon:68328..70151 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	92637.XP_007811982.1
PFAMs	LtrA
Max annot lvl	4751\|Fungi
Evalue	9.5e-14
EggNOG OGs	2AW51@1\|root,2RZXZ@2759\|Eukaryota,38B87@33154\|Opisthokonta,3NZND@4751\|Fungi,3QNXA@4890\|Ascomycota,215ZN@147550\|Sordariomycetes,3TJUU@5125\|Hypocreales,3G59X@34397\|Clavicipitaceae
Description	Low temperature requirement A protein(LtrA)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9813	Ggra9813	Gracilaria gracilis GNS1m male	gene	tig00000236_pilon 68328..70151 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9813.t1.stop1	Ggra9813.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000236_pilon 68328..68330 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9813.t1.CDS1	Ggra9813.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000236_pilon 68328..70151 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9813.t1.exon1	Ggra9813.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000236_pilon 68328..70151 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9813.t1.start1	Ggra9813.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000236_pilon 70149..70151 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9813.t1	Ggra9813.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000236_pilon 68328..70151 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000236_pilon:68328..70151-
coding sequence from alignment at tig00000236_pilon:68328..70151-

mRNA sequence

>Ggra9813.t1 ID=Ggra9813.t1|Name=Ggra9813.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=608bp
MKPTDSSSLPKHSTPSGSGRGTSSARMSQQPVHHVEEFGEVENIHHQEVE
SHHSDAAPPPLRERDRKQTRNLKNKAIRTLFDKRHLQQYFYNETLYRSPI
TRTVAADELFFDLVLVGGIAALGHELRENFSSWKDVEKFFLLFGAIYNSW
RVIVMSWNFWSIKKDLFEKLSIYAVFFCLIGIALGAHGAFQDGIRPYVAI
CSFLATAIPSAVSFFWASREPLLRNPHNRFNQLKAVSVVGVIVTSPYFAA
AFVGSERATRILYWIPLVAQFFSIHLTGNLYRFLHRNRPATRLAVAIELM
VEKYEVLTMIVLGESVIGILFEAGKFITSEGARLGRLYAVAAATAAKLYS
LQTLYVNVDASILKGGQHAIRHSANYGIVWSQLHTLYHMALILFATGLGT
SIHDVVLPPKSEAVARWLVRAGEDTSKASGFTFQRKQRWLFSVGWGMSMI
ISAAFGALHEGGPRAASKSYRTVARVTTAVAVMIGLPFSDLRADLYLGVH
TAVLVFFGITEFILVHLDRLGFFRSEGSSTPSSLAGESFETFDSDDEYSG
DAPTNPEDVRLDHSSDLPEEISRALKERLCKGHSCQMVKVQPTAKKKRGD
IGEDNNV*

spliced messenger RNA

>Ggra9813.t1 ID=Ggra9813.t1|Name=Ggra9813.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1824bp|location=Sequence derived from alignment at tig00000236_pilon:68328..70151- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCCGACAGATTCCTCCTCGCTGCCCAAGCACTCCACTCCGAGTGG
TAGCGGGAGAGGCACGAGTTCCGCCCGCATGTCGCAACAACCAGTTCATC
ACGTGGAAGAATTCGGAGAAGTTGAAAACATTCACCACCAAGAGGTCGAA
TCACATCACAGCGACGCCGCGCCACCACCGTTAAGAGAAAGAGACCGCAA
ACAAACTCGCAACCTCAAGAATAAGGCTATCCGAACTCTGTTTGACAAGC
GACACCTACAACAATATTTTTACAACGAAACGCTCTATAGAAGTCCTATT
ACGAGGACTGTGGCTGCCGATGAACTTTTCTTCGACTTGGTACTTGTCGG
CGGAATTGCGGCGCTTGGACATGAGTTGAGGGAGAATTTCTCCTCATGGA
AGGATGTCGAAAAGTTCTTTCTCCTATTTGGCGCTATCTACAATAGCTGG
CGCGTTATCGTTATGAGTTGGAACTTCTGGAGCATTAAGAAGGATCTGTT
CGAGAAGCTTAGCATCTATGCCGTGTTCTTTTGCTTGATTGGAATCGCAT
TGGGAGCGCATGGCGCCTTTCAAGATGGCATTCGCCCTTACGTCGCTATT
TGTTCTTTTCTGGCTACAGCAATACCCTCTGCAGTCTCGTTCTTTTGGGC
AAGTAGAGAACCATTATTGAGGAACCCGCACAATCGATTCAATCAGTTGA
AAGCCGTGTCTGTTGTTGGCGTCATAGTTACCTCACCGTACTTTGCTGCT
GCGTTTGTTGGATCGGAACGGGCGACGCGCATCTTGTACTGGATTCCTCT
GGTTGCCCAATTTTTTTCTATTCATCTTACGGGCAACCTGTATCGGTTTC
TTCATCGAAATCGCCCTGCCACCCGTCTTGCCGTTGCCATCGAGCTCATG
GTAGAGAAGTACGAAGTGCTGACAATGATTGTGTTGGGTGAATCTGTGAT
AGGTATTCTATTTGAGGCGGGCAAGTTTATAACCAGCGAGGGAGCAAGGT
TGGGCAGGCTTTACGCTGTGGCAGCTGCTACCGCCGCAAAGCTTTATTCT
TTGCAGACATTATACGTCAATGTAGACGCATCCATTCTTAAAGGAGGACA
GCATGCTATACGTCACAGTGCAAATTATGGTATCGTGTGGAGTCAACTGC
ACACTCTCTATCACATGGCACTCATTCTATTTGCAACGGGACTAGGAACA
TCAATCCATGATGTTGTCTTGCCTCCGAAGAGCGAAGCTGTTGCGCGTTG
GCTCGTCCGCGCTGGAGAAGATACCTCTAAAGCGTCAGGATTTACTTTTC
AACGCAAGCAGCGATGGTTGTTCTCGGTCGGATGGGGTATGTCTATGATT
ATTTCGGCTGCGTTTGGGGCCCTGCACGAGGGCGGACCACGCGCAGCATC
CAAGTCGTATCGAACTGTGGCTCGCGTGACTACCGCTGTTGCAGTTATGA
TTGGCCTTCCATTCTCAGATCTCCGAGCAGATTTGTACCTTGGTGTTCAC
ACTGCTGTACTCGTGTTCTTTGGCATCACCGAATTCATCCTTGTTCACCT
TGACCGACTTGGATTCTTCCGATCTGAGGGCAGTAGCACGCCTAGTAGTC
TGGCTGGAGAGTCATTTGAAACATTTGATTCGGATGATGAATATAGTGGC
GATGCGCCAACGAACCCCGAAGATGTGAGACTGGATCATAGCTCTGATCT
TCCAGAAGAGATTTCAAGGGCTTTGAAAGAACGGCTGTGCAAGGGACATT
CTTGCCAAATGGTCAAGGTACAGCCAACGGCGAAGAAGAAACGTGGAGAT
ATTGGAGAGGACAACAATGTGTAA

protein sequence of Ggra9813.t1

>Ggra9813.t1 ID=Ggra9813.t1|Name=Ggra9813.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=608bp
MKPTDSSSLPKHSTPSGSGRGTSSARMSQQPVHHVEEFGEVENIHHQEVE
SHHSDAAPPPLRERDRKQTRNLKNKAIRTLFDKRHLQQYFYNETLYRSPI
TRTVAADELFFDLVLVGGIAALGHELRENFSSWKDVEKFFLLFGAIYNSW
RVIVMSWNFWSIKKDLFEKLSIYAVFFCLIGIALGAHGAFQDGIRPYVAI
CSFLATAIPSAVSFFWASREPLLRNPHNRFNQLKAVSVVGVIVTSPYFAA
AFVGSERATRILYWIPLVAQFFSIHLTGNLYRFLHRNRPATRLAVAIELM
VEKYEVLTMIVLGESVIGILFEAGKFITSEGARLGRLYAVAAATAAKLYS
LQTLYVNVDASILKGGQHAIRHSANYGIVWSQLHTLYHMALILFATGLGT
SIHDVVLPPKSEAVARWLVRAGEDTSKASGFTFQRKQRWLFSVGWGMSMI
ISAAFGALHEGGPRAASKSYRTVARVTTAVAVMIGLPFSDLRADLYLGVH
TAVLVFFGITEFILVHLDRLGFFRSEGSSTPSSLAGESFETFDSDDEYSG
DAPTNPEDVRLDHSSDLPEEISRALKERLCKGHSCQMVKVQPTAKKKRGD
IGEDNNV*

mRNA from alignment at tig00000236_pilon:68328..70151-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9813.t1 ID=Ggra9813.t1|Name=Ggra9813.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1824bp|location=Sequence derived from alignment at tig00000236_pilon:68328..70151- (Gracilaria gracilis GNS1m male)
ATGAAGCCGACAGATTCCTCCTCGCTGCCCAAGCACTCCACTCCGAGTGG
TAGCGGGAGAGGCACGAGTTCCGCCCGCATGTCGCAACAACCAGTTCATC
ACGTGGAAGAATTCGGAGAAGTTGAAAACATTCACCACCAAGAGGTCGAA
TCACATCACAGCGACGCCGCGCCACCACCGTTAAGAGAAAGAGACCGCAA
ACAAACTCGCAACCTCAAGAATAAGGCTATCCGAACTCTGTTTGACAAGC
GACACCTACAACAATATTTTTACAACGAAACGCTCTATAGAAGTCCTATT
ACGAGGACTGTGGCTGCCGATGAACTTTTCTTCGACTTGGTACTTGTCGG
CGGAATTGCGGCGCTTGGACATGAGTTGAGGGAGAATTTCTCCTCATGGA
AGGATGTCGAAAAGTTCTTTCTCCTATTTGGCGCTATCTACAATAGCTGG
CGCGTTATCGTTATGAGTTGGAACTTCTGGAGCATTAAGAAGGATCTGTT
CGAGAAGCTTAGCATCTATGCCGTGTTCTTTTGCTTGATTGGAATCGCAT
TGGGAGCGCATGGCGCCTTTCAAGATGGCATTCGCCCTTACGTCGCTATT
TGTTCTTTTCTGGCTACAGCAATACCCTCTGCAGTCTCGTTCTTTTGGGC
AAGTAGAGAACCATTATTGAGGAACCCGCACAATCGATTCAATCAGTTGA
AAGCCGTGTCTGTTGTTGGCGTCATAGTTACCTCACCGTACTTTGCTGCT
GCGTTTGTTGGATCGGAACGGGCGACGCGCATCTTGTACTGGATTCCTCT
GGTTGCCCAATTTTTTTCTATTCATCTTACGGGCAACCTGTATCGGTTTC
TTCATCGAAATCGCCCTGCCACCCGTCTTGCCGTTGCCATCGAGCTCATG
GTAGAGAAGTACGAAGTGCTGACAATGATTGTGTTGGGTGAATCTGTGAT
AGGTATTCTATTTGAGGCGGGCAAGTTTATAACCAGCGAGGGAGCAAGGT
TGGGCAGGCTTTACGCTGTGGCAGCTGCTACCGCCGCAAAGCTTTATTCT
TTGCAGACATTATACGTCAATGTAGACGCATCCATTCTTAAAGGAGGACA
GCATGCTATACGTCACAGTGCAAATTATGGTATCGTGTGGAGTCAACTGC
ACACTCTCTATCACATGGCACTCATTCTATTTGCAACGGGACTAGGAACA
TCAATCCATGATGTTGTCTTGCCTCCGAAGAGCGAAGCTGTTGCGCGTTG
GCTCGTCCGCGCTGGAGAAGATACCTCTAAAGCGTCAGGATTTACTTTTC
AACGCAAGCAGCGATGGTTGTTCTCGGTCGGATGGGGTATGTCTATGATT
ATTTCGGCTGCGTTTGGGGCCCTGCACGAGGGCGGACCACGCGCAGCATC
CAAGTCGTATCGAACTGTGGCTCGCGTGACTACCGCTGTTGCAGTTATGA
TTGGCCTTCCATTCTCAGATCTCCGAGCAGATTTGTACCTTGGTGTTCAC
ACTGCTGTACTCGTGTTCTTTGGCATCACCGAATTCATCCTTGTTCACCT
TGACCGACTTGGATTCTTCCGATCTGAGGGCAGTAGCACGCCTAGTAGTC
TGGCTGGAGAGTCATTTGAAACATTTGATTCGGATGATGAATATAGTGGC
GATGCGCCAACGAACCCCGAAGATGTGAGACTGGATCATAGCTCTGATCT
TCCAGAAGAGATTTCAAGGGCTTTGAAAGAACGGCTGTGCAAGGGACATT
CTTGCCAAATGGTCAAGGTACAGCCAACGGCGAAGAAGAAACGTGGAGAT
ATTGGAGAGGACAACAATGTGTAA

Coding sequence (CDS) from alignment at tig00000236_pilon:68328..70151-

>Ggra9813.t1 ID=Ggra9813.t1|Name=Ggra9813.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1824bp|location=Sequence derived from alignment at tig00000236_pilon:68328..70151- (Gracilaria gracilis GNS1m male)
ATGAAGCCGACAGATTCCTCCTCGCTGCCCAAGCACTCCACTCCGAGTGG
TAGCGGGAGAGGCACGAGTTCCGCCCGCATGTCGCAACAACCAGTTCATC
ACGTGGAAGAATTCGGAGAAGTTGAAAACATTCACCACCAAGAGGTCGAA
TCACATCACAGCGACGCCGCGCCACCACCGTTAAGAGAAAGAGACCGCAA
ACAAACTCGCAACCTCAAGAATAAGGCTATCCGAACTCTGTTTGACAAGC
GACACCTACAACAATATTTTTACAACGAAACGCTCTATAGAAGTCCTATT
ACGAGGACTGTGGCTGCCGATGAACTTTTCTTCGACTTGGTACTTGTCGG
CGGAATTGCGGCGCTTGGACATGAGTTGAGGGAGAATTTCTCCTCATGGA
AGGATGTCGAAAAGTTCTTTCTCCTATTTGGCGCTATCTACAATAGCTGG
CGCGTTATCGTTATGAGTTGGAACTTCTGGAGCATTAAGAAGGATCTGTT
CGAGAAGCTTAGCATCTATGCCGTGTTCTTTTGCTTGATTGGAATCGCAT
TGGGAGCGCATGGCGCCTTTCAAGATGGCATTCGCCCTTACGTCGCTATT
TGTTCTTTTCTGGCTACAGCAATACCCTCTGCAGTCTCGTTCTTTTGGGC
AAGTAGAGAACCATTATTGAGGAACCCGCACAATCGATTCAATCAGTTGA
AAGCCGTGTCTGTTGTTGGCGTCATAGTTACCTCACCGTACTTTGCTGCT
GCGTTTGTTGGATCGGAACGGGCGACGCGCATCTTGTACTGGATTCCTCT
GGTTGCCCAATTTTTTTCTATTCATCTTACGGGCAACCTGTATCGGTTTC
TTCATCGAAATCGCCCTGCCACCCGTCTTGCCGTTGCCATCGAGCTCATG
GTAGAGAAGTACGAAGTGCTGACAATGATTGTGTTGGGTGAATCTGTGAT
AGGTATTCTATTTGAGGCGGGCAAGTTTATAACCAGCGAGGGAGCAAGGT
TGGGCAGGCTTTACGCTGTGGCAGCTGCTACCGCCGCAAAGCTTTATTCT
TTGCAGACATTATACGTCAATGTAGACGCATCCATTCTTAAAGGAGGACA
GCATGCTATACGTCACAGTGCAAATTATGGTATCGTGTGGAGTCAACTGC
ACACTCTCTATCACATGGCACTCATTCTATTTGCAACGGGACTAGGAACA
TCAATCCATGATGTTGTCTTGCCTCCGAAGAGCGAAGCTGTTGCGCGTTG
GCTCGTCCGCGCTGGAGAAGATACCTCTAAAGCGTCAGGATTTACTTTTC
AACGCAAGCAGCGATGGTTGTTCTCGGTCGGATGGGGTATGTCTATGATT
ATTTCGGCTGCGTTTGGGGCCCTGCACGAGGGCGGACCACGCGCAGCATC
CAAGTCGTATCGAACTGTGGCTCGCGTGACTACCGCTGTTGCAGTTATGA
TTGGCCTTCCATTCTCAGATCTCCGAGCAGATTTGTACCTTGGTGTTCAC
ACTGCTGTACTCGTGTTCTTTGGCATCACCGAATTCATCCTTGTTCACCT
TGACCGACTTGGATTCTTCCGATCTGAGGGCAGTAGCACGCCTAGTAGTC
TGGCTGGAGAGTCATTTGAAACATTTGATTCGGATGATGAATATAGTGGC
GATGCGCCAACGAACCCCGAAGATGTGAGACTGGATCATAGCTCTGATCT
TCCAGAAGAGATTTCAAGGGCTTTGAAAGAACGGCTGTGCAAGGGACATT
CTTGCCAAATGGTCAAGGTACAGCCAACGGCGAAGAAGAAACGTGGAGAT
ATTGGAGAGGACAACAATGTGTAA