Ggra980.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra980.t1
Unique Name	Ggra980.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	334

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000027_pilon	contig	tig00000027_pilon:47646..48647 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2903.EOD40142
Preferred name	CYCB
PFAMs	Cyclin_C,Cyclin_N
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K21770,ko:K21777
KEGG TC	1.I.1.1.3
KEGG Pathway	ko04068,ko04110,ko04114,ko04115,ko04218,ko04914,ko05166,map04068,map04110,map04114,map04115,map04218,map04914,map05166
GOs	GO:0001558,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009314,GO:0009628,GO:0010212,GO:0010332,GO:0040008,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0065007
Evalue	9.92e-47
EggNOG OGs	COG5024@1\|root,KOG0653@2759\|Eukaryota
Description	cell division
COG category	D
BRITE	ko00000,ko00001,ko03032,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra980	Ggra980	Gracilaria gracilis GNS1m male	gene	tig00000027_pilon 47646..48647 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra980.t1.stop1	Ggra980.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000027_pilon 47646..47648 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra980.t1.CDS1	Ggra980.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000027_pilon 47646..48647 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra980.t1.exon1	Ggra980.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000027_pilon 47646..48647 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra980.t1.start1	Ggra980.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000027_pilon 48645..48647 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra980.t1	Ggra980.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000027_pilon 47646..48647 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000027_pilon:47646..48647-
coding sequence from alignment at tig00000027_pilon:47646..48647-

mRNA sequence

>Ggra980.t1 ID=Ggra980.t1|Name=Ggra980.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=334bp
MFMSKMPMRALEDITNHVGRTISLSSKRSVPAQKSMKNTKTKRHCNAHVK
QIPINREAFSSSPDVKYIDIDATDKLNHKEGSDFASVIHKNHLEAEGRHH
CESSFLDSHKTVTQEMRSILVDWIADVCVSLKLRDSTLHLCVNVLDRFLQ
SFEPTRKNLQLVGSVCLYIAAKYEEIYAPDANDFVTLADGAFDRGDVVMM
EAKILNALRFEVTTPYCLTFLARIEKTLDAKGVPAEQLQNIMEHSQMLVE
LAMVDGLCLKYRPSQLSAAAVLLAFEKLNMPVVWCESLSFHSGWSKCEIL
PCLEDVRNILEPKSSMRRLSAIRRKFAKISMPF*

spliced messenger RNA

>Ggra980.t1 ID=Ggra980.t1|Name=Ggra980.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00000027_pilon:47646..48647- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCATGTCAAAGATGCCAATGCGCGCTCTGGAAGACATTACCAACCA
TGTAGGCCGAACTATCTCCCTCTCGTCCAAACGATCTGTTCCAGCCCAGA
AGTCCATGAAAAACACTAAGACAAAAAGGCATTGCAATGCACATGTCAAG
CAGATTCCTATCAATAGGGAAGCATTTTCTTCGTCACCAGATGTGAAGTA
CATCGACATCGATGCTACAGACAAATTGAATCACAAAGAAGGAAGCGATT
TTGCTTCCGTTATTCACAAGAATCACCTTGAGGCAGAAGGGCGTCATCAT
TGTGAGAGCAGTTTTCTGGATTCTCACAAGACTGTGACGCAAGAAATGCG
ATCAATTCTGGTTGACTGGATCGCAGATGTCTGTGTCAGTCTCAAGCTCA
GAGACAGCACCCTACATCTATGTGTTAACGTTCTGGATCGGTTCCTTCAA
AGCTTTGAACCGACCCGAAAGAATCTTCAGCTGGTGGGAAGCGTGTGTCT
CTACATTGCCGCGAAGTACGAGGAGATCTATGCTCCAGATGCAAACGACT
TTGTCACGCTGGCCGATGGAGCTTTCGACAGGGGCGATGTGGTCATGATG
GAGGCCAAAATTCTAAACGCTCTACGGTTCGAAGTGACTACTCCATATTG
CTTAACATTCTTGGCCCGAATTGAAAAGACTCTGGACGCAAAAGGGGTTC
CCGCTGAACAACTGCAAAACATCATGGAGCATTCTCAAATGTTGGTAGAG
CTGGCGATGGTGGATGGACTCTGCTTGAAGTACAGACCAAGCCAGTTATC
TGCTGCGGCTGTTTTGCTTGCGTTTGAAAAGCTTAACATGCCGGTAGTTT
GGTGTGAAAGTCTTTCCTTCCACTCAGGTTGGAGCAAGTGTGAGATTCTT
CCATGTCTTGAAGACGTCCGGAACATTCTGGAGCCCAAGTCTTCGATGAG
GCGTCTCAGCGCCATTCGTAGAAAGTTCGCAAAGATCTCAATGCCTTTTT
GA

protein sequence of Ggra980.t1

>Ggra980.t1 ID=Ggra980.t1|Name=Ggra980.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=334bp
MFMSKMPMRALEDITNHVGRTISLSSKRSVPAQKSMKNTKTKRHCNAHVK
QIPINREAFSSSPDVKYIDIDATDKLNHKEGSDFASVIHKNHLEAEGRHH
CESSFLDSHKTVTQEMRSILVDWIADVCVSLKLRDSTLHLCVNVLDRFLQ
SFEPTRKNLQLVGSVCLYIAAKYEEIYAPDANDFVTLADGAFDRGDVVMM
EAKILNALRFEVTTPYCLTFLARIEKTLDAKGVPAEQLQNIMEHSQMLVE
LAMVDGLCLKYRPSQLSAAAVLLAFEKLNMPVVWCESLSFHSGWSKCEIL
PCLEDVRNILEPKSSMRRLSAIRRKFAKISMPF*

mRNA from alignment at tig00000027_pilon:47646..48647-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra980.t1 ID=Ggra980.t1|Name=Ggra980.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00000027_pilon:47646..48647- (Gracilaria gracilis GNS1m male)
ATGTTCATGTCAAAGATGCCAATGCGCGCTCTGGAAGACATTACCAACCA
TGTAGGCCGAACTATCTCCCTCTCGTCCAAACGATCTGTTCCAGCCCAGA
AGTCCATGAAAAACACTAAGACAAAAAGGCATTGCAATGCACATGTCAAG
CAGATTCCTATCAATAGGGAAGCATTTTCTTCGTCACCAGATGTGAAGTA
CATCGACATCGATGCTACAGACAAATTGAATCACAAAGAAGGAAGCGATT
TTGCTTCCGTTATTCACAAGAATCACCTTGAGGCAGAAGGGCGTCATCAT
TGTGAGAGCAGTTTTCTGGATTCTCACAAGACTGTGACGCAAGAAATGCG
ATCAATTCTGGTTGACTGGATCGCAGATGTCTGTGTCAGTCTCAAGCTCA
GAGACAGCACCCTACATCTATGTGTTAACGTTCTGGATCGGTTCCTTCAA
AGCTTTGAACCGACCCGAAAGAATCTTCAGCTGGTGGGAAGCGTGTGTCT
CTACATTGCCGCGAAGTACGAGGAGATCTATGCTCCAGATGCAAACGACT
TTGTCACGCTGGCCGATGGAGCTTTCGACAGGGGCGATGTGGTCATGATG
GAGGCCAAAATTCTAAACGCTCTACGGTTCGAAGTGACTACTCCATATTG
CTTAACATTCTTGGCCCGAATTGAAAAGACTCTGGACGCAAAAGGGGTTC
CCGCTGAACAACTGCAAAACATCATGGAGCATTCTCAAATGTTGGTAGAG
CTGGCGATGGTGGATGGACTCTGCTTGAAGTACAGACCAAGCCAGTTATC
TGCTGCGGCTGTTTTGCTTGCGTTTGAAAAGCTTAACATGCCGGTAGTTT
GGTGTGAAAGTCTTTCCTTCCACTCAGGTTGGAGCAAGTGTGAGATTCTT
CCATGTCTTGAAGACGTCCGGAACATTCTGGAGCCCAAGTCTTCGATGAG
GCGTCTCAGCGCCATTCGTAGAAAGTTCGCAAAGATCTCAATGCCTTTTT
GA

Coding sequence (CDS) from alignment at tig00000027_pilon:47646..48647-

>Ggra980.t1 ID=Ggra980.t1|Name=Ggra980.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1002bp|location=Sequence derived from alignment at tig00000027_pilon:47646..48647- (Gracilaria gracilis GNS1m male)
ATGTTCATGTCAAAGATGCCAATGCGCGCTCTGGAAGACATTACCAACCA
TGTAGGCCGAACTATCTCCCTCTCGTCCAAACGATCTGTTCCAGCCCAGA
AGTCCATGAAAAACACTAAGACAAAAAGGCATTGCAATGCACATGTCAAG
CAGATTCCTATCAATAGGGAAGCATTTTCTTCGTCACCAGATGTGAAGTA
CATCGACATCGATGCTACAGACAAATTGAATCACAAAGAAGGAAGCGATT
TTGCTTCCGTTATTCACAAGAATCACCTTGAGGCAGAAGGGCGTCATCAT
TGTGAGAGCAGTTTTCTGGATTCTCACAAGACTGTGACGCAAGAAATGCG
ATCAATTCTGGTTGACTGGATCGCAGATGTCTGTGTCAGTCTCAAGCTCA
GAGACAGCACCCTACATCTATGTGTTAACGTTCTGGATCGGTTCCTTCAA
AGCTTTGAACCGACCCGAAAGAATCTTCAGCTGGTGGGAAGCGTGTGTCT
CTACATTGCCGCGAAGTACGAGGAGATCTATGCTCCAGATGCAAACGACT
TTGTCACGCTGGCCGATGGAGCTTTCGACAGGGGCGATGTGGTCATGATG
GAGGCCAAAATTCTAAACGCTCTACGGTTCGAAGTGACTACTCCATATTG
CTTAACATTCTTGGCCCGAATTGAAAAGACTCTGGACGCAAAAGGGGTTC
CCGCTGAACAACTGCAAAACATCATGGAGCATTCTCAAATGTTGGTAGAG
CTGGCGATGGTGGATGGACTCTGCTTGAAGTACAGACCAAGCCAGTTATC
TGCTGCGGCTGTTTTGCTTGCGTTTGAAAAGCTTAACATGCCGGTAGTTT
GGTGTGAAAGTCTTTCCTTCCACTCAGGTTGGAGCAAGTGTGAGATTCTT
CCATGTCTTGAAGACGTCCGGAACATTCTGGAGCCCAAGTCTTCGATGAG
GCGTCTCAGCGCCATTCGTAGAAAGTTCGCAAAGATCTCAATGCCTTTTT
GA