Ggra978.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra978.t1
Unique NameGgra978.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length170
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000027_piloncontigtig00000027_pilon:42248..42757 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra978Ggra978Gracilaria gracilis GNS1m malegenetig00000027_pilon 42248..42757 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra978.t1.stop1Ggra978.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000027_pilon 42248..42250 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra978.t1.CDS1Ggra978.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000027_pilon 42248..42757 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra978.t1.exon1Ggra978.t1.exon1Gracilaria gracilis GNS1m maleexontig00000027_pilon 42248..42757 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra978.t1.start1Ggra978.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000027_pilon 42755..42757 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra978.t1Ggra978.t1Gracilaria gracilis GNS1m malepolypeptidetig00000027_pilon 42248..42757 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra978.t1 ID=Ggra978.t1|Name=Ggra978.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=170bp
MPNPHRRNDAKLSSVHFPFLQTPCLHSEPVSHVSHSPFLAGTGLGVPRRG
GSGRGGKHLPLEAGELNTHFPDIQSFEAQSMLFVHLAHSRPKPHRIREPK
LASVHLPFLQTPWTHSEPMEHGSHSGFLGDEDRVGDGLGDDVGDGIGDDV
ADGTGDDVGEGTGDDVGDG*
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spliced messenger RNA

>Ggra978.t1 ID=Ggra978.t1|Name=Ggra978.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=510bp|location=Sequence derived from alignment at tig00000027_pilon:42248..42757- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAAATCCGCATCGACGTAACGATGCGAAGCTGTCGTCCGTACATTT
TCCCTTCTTGCAAACCCCTTGCCTGCATTCAGAACCAGTTTCACACGTTT
CACATTCTCCCTTCCTCGCGGGAACCGGGCTAGGGGTCCCTCGACGAGGA
GGATCTGGACGAGGAGGGAAGCACCTCCCTCTGGAAGCTGGAGAGTTGAA
CACACACTTTCCAGACATACAAAGCTTCGAAGCACAATCAATGTTGTTTG
TGCATCTGGCACATTCCCGACCGAAACCGCATCGAATAAGAGAACCAAAG
CTGGCATCAGTACACTTACCCTTCCTGCAAACGCCTTGGACACATTCGGA
ACCCATGGAACATGGATCACACTCAGGTTTTCTCGGAGATGAAGATCGTG
TTGGAGATGGCCTTGGAGATGATGTTGGAGACGGTATTGGAGATGATGTT
GCAGACGGGACTGGAGATGATGTTGGAGAGGGTACCGGCGATGATGTCGG
AGATGGCTGA
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protein sequence of Ggra978.t1

>Ggra978.t1 ID=Ggra978.t1|Name=Ggra978.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=170bp
MPNPHRRNDAKLSSVHFPFLQTPCLHSEPVSHVSHSPFLAGTGLGVPRRG
GSGRGGKHLPLEAGELNTHFPDIQSFEAQSMLFVHLAHSRPKPHRIREPK
LASVHLPFLQTPWTHSEPMEHGSHSGFLGDEDRVGDGLGDDVGDGIGDDV
ADGTGDDVGEGTGDDVGDG*
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mRNA from alignment at tig00000027_pilon:42248..42757-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra978.t1 ID=Ggra978.t1|Name=Ggra978.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=510bp|location=Sequence derived from alignment at tig00000027_pilon:42248..42757- (Gracilaria gracilis GNS1m male)
ATGCCAAATCCGCATCGACGTAACGATGCGAAGCTGTCGTCCGTACATTT
TCCCTTCTTGCAAACCCCTTGCCTGCATTCAGAACCAGTTTCACACGTTT
CACATTCTCCCTTCCTCGCGGGAACCGGGCTAGGGGTCCCTCGACGAGGA
GGATCTGGACGAGGAGGGAAGCACCTCCCTCTGGAAGCTGGAGAGTTGAA
CACACACTTTCCAGACATACAAAGCTTCGAAGCACAATCAATGTTGTTTG
TGCATCTGGCACATTCCCGACCGAAACCGCATCGAATAAGAGAACCAAAG
CTGGCATCAGTACACTTACCCTTCCTGCAAACGCCTTGGACACATTCGGA
ACCCATGGAACATGGATCACACTCAGGTTTTCTCGGAGATGAAGATCGTG
TTGGAGATGGCCTTGGAGATGATGTTGGAGACGGTATTGGAGATGATGTT
GCAGACGGGACTGGAGATGATGTTGGAGAGGGTACCGGCGATGATGTCGG
AGATGGCTGA
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Coding sequence (CDS) from alignment at tig00000027_pilon:42248..42757-

>Ggra978.t1 ID=Ggra978.t1|Name=Ggra978.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=510bp|location=Sequence derived from alignment at tig00000027_pilon:42248..42757- (Gracilaria gracilis GNS1m male)
ATGCCAAATCCGCATCGACGTAACGATGCGAAGCTGTCGTCCGTACATTT
TCCCTTCTTGCAAACCCCTTGCCTGCATTCAGAACCAGTTTCACACGTTT
CACATTCTCCCTTCCTCGCGGGAACCGGGCTAGGGGTCCCTCGACGAGGA
GGATCTGGACGAGGAGGGAAGCACCTCCCTCTGGAAGCTGGAGAGTTGAA
CACACACTTTCCAGACATACAAAGCTTCGAAGCACAATCAATGTTGTTTG
TGCATCTGGCACATTCCCGACCGAAACCGCATCGAATAAGAGAACCAAAG
CTGGCATCAGTACACTTACCCTTCCTGCAAACGCCTTGGACACATTCGGA
ACCCATGGAACATGGATCACACTCAGGTTTTCTCGGAGATGAAGATCGTG
TTGGAGATGGCCTTGGAGATGATGTTGGAGACGGTATTGGAGATGATGTT
GCAGACGGGACTGGAGATGATGTTGGAGAGGGTACCGGCGATGATGTCGG
AGATGGCTGA
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