Ggra9770.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9770.t1
Unique NameGgra9770.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length369
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000067_piloncontigtig00000067_pilon:212945..214486 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6238.CBG00560
Preferred nameBCS1L
PFAMsAAA,BCS1_N
Max annot lvl33208|Metazoa
KEGG koko:K08900
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005750,GO:0006996,GO:0007005,GO:0008150,GO:0008535,GO:0009987,GO:0010257,GO:0016020,GO:0016043,GO:0017004,GO:0017062,GO:0019866,GO:0022607,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032981,GO:0032991,GO:0033108,GO:0033617,GO:0034551,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045275,GO:0065003,GO:0070069,GO:0070469,GO:0071840,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1902494,GO:1990204
Evalue8.18e-09
EggNOG OGsCOG0465@1|root,KOG0743@2759|Eukaryota,38CMD@33154|Opisthokonta,3BCX0@33208|Metazoa,3CW24@33213|Bilateria,40ATI@6231|Nematoda,1KXV6@119089|Chromadorea,40XDD@6236|Rhabditida
DescriptionBelongs to the AAA ATPase family
COG categoryO
BRITEko00000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9770Ggra9770Gracilaria gracilis GNS1m malegenetig00000067_pilon 212945..214486 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9770.t1Ggra9770.t1Gracilaria gracilis GNS1m malepolypeptidetig00000067_pilon 212945..214486 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9770.t1.stop1Ggra9770.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000067_pilon 212945..212947 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9770.t1.CDS1Ggra9770.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000067_pilon 212945..213341 -
Ggra9770.t1.CDS2Ggra9770.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000067_pilon 213777..214486 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9770.t1.exon1Ggra9770.t1.exon1Gracilaria gracilis GNS1m maleexontig00000067_pilon 212945..213341 -
Ggra9770.t1.exon2Ggra9770.t1.exon2Gracilaria gracilis GNS1m maleexontig00000067_pilon 213777..214486 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9770.t1.intron1Ggra9770.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000067_pilon 213342..213776 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9770.t1.start1Ggra9770.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000067_pilon 214484..214486 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9770.t1 ID=Ggra9770.t1|Name=Ggra9770.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=369bp
MAPELQPLSFSPVPQGSLTHFPESHQKELVQIFDVPANRISSCTVTHETR
KLYNTILLYAALFPNTLDSNDARRFFVNHEDPYVDANTDEDDHSLSRLRR
NRLLSMSPGIAPGSGTRRPKAPLPKLLMDVGSTVVCWPPPEDLVPQFLIL
NGDHQPYKLPDGMGDSVSLHIMHYEMGAPLSSCGEGITPLHVVRVSTHHG
DEALQEFLKGMLQWNVDRSSPDHQGRKYNLYRFKCDSSEGLITIMTTNHV
DRLDPALIRGGRVDRRFRFVPPSEGQLAILFRLFYRNASDEQVNQFVESL
VRWGEDNEAPTIATLQQLFIQYRGRSVEMCLAALPGFLSESAAHAAVVEE
QKEKRTELKKEEGNESKE*
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spliced messenger RNA

>Ggra9770.t1 ID=Ggra9770.t1|Name=Ggra9770.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1107bp|location=Sequence derived from alignment at tig00000067_pilon:212945..214486- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCCTGAACTGCAGCCCCTTTCGTTCTCCCCCGTTCCCCAAGGATC
ACTGACCCACTTCCCAGAATCGCATCAGAAAGAGCTCGTGCAAATCTTCG
ATGTTCCCGCCAATCGAATCTCCTCCTGCACAGTAACACATGAGACCAGG
AAACTCTACAACACCATCCTTCTGTACGCTGCACTCTTCCCGAATACGCT
TGACTCCAACGATGCGCGCAGGTTCTTTGTTAATCATGAGGACCCTTATG
TCGACGCAAACACCGATGAAGACGACCACAGCCTATCCCGTCTTCGTCGC
AACAGGTTACTATCAATGTCGCCCGGCATTGCCCCTGGATCAGGAACAAG
GCGTCCCAAAGCCCCTCTCCCCAAGCTTCTGATGGATGTTGGGTCCACCG
TAGTCTGCTGGCCACCGCCAGAAGATCTCGTTCCACAATTTCTCATTTTG
AATGGCGACCATCAACCGTACAAACTTCCGGACGGAATGGGAGACAGTGT
TAGTCTTCATATCATGCACTATGAAATGGGAGCGCCTCTTAGCAGCTGTG
GGGAAGGAATAACCCCTCTACATGTCGTTCGCGTCTCCACTCATCATGGT
GATGAAGCCCTCCAGGAGTTCTTGAAGGGCATGTTGCAGTGGAATGTTGA
TCGAAGTAGTCCGGACCATCAAGGAAGGAAATACAATTTGTATAGATTCA
AATGCGATTCTTCTGAGGGTCTAATCACAATTATGACCACTAACCACGTT
GATCGACTTGATCCTGCTCTCATCCGGGGTGGTCGCGTTGATAGACGTTT
TCGGTTCGTCCCGCCCTCTGAAGGGCAGTTAGCTATATTGTTCAGATTGT
TTTACAGAAACGCAAGCGATGAGCAGGTGAACCAGTTTGTCGAAAGCCTT
GTACGATGGGGAGAGGACAATGAAGCTCCAACCATTGCTACATTGCAACA
GTTGTTCATTCAATATCGTGGTCGTTCGGTTGAAATGTGCCTTGCAGCTC
TACCGGGCTTTCTCTCAGAATCTGCGGCGCATGCTGCCGTAGTCGAGGAA
CAGAAAGAGAAGCGAACAGAATTAAAGAAGGAGGAGGGAAATGAATCAAA
GGAATAA
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protein sequence of Ggra9770.t1

>Ggra9770.t1 ID=Ggra9770.t1|Name=Ggra9770.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=369bp
MAPELQPLSFSPVPQGSLTHFPESHQKELVQIFDVPANRISSCTVTHETR
KLYNTILLYAALFPNTLDSNDARRFFVNHEDPYVDANTDEDDHSLSRLRR
NRLLSMSPGIAPGSGTRRPKAPLPKLLMDVGSTVVCWPPPEDLVPQFLIL
NGDHQPYKLPDGMGDSVSLHIMHYEMGAPLSSCGEGITPLHVVRVSTHHG
DEALQEFLKGMLQWNVDRSSPDHQGRKYNLYRFKCDSSEGLITIMTTNHV
DRLDPALIRGGRVDRRFRFVPPSEGQLAILFRLFYRNASDEQVNQFVESL
VRWGEDNEAPTIATLQQLFIQYRGRSVEMCLAALPGFLSESAAHAAVVEE
QKEKRTELKKEEGNESKE*
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mRNA from alignment at tig00000067_pilon:212945..214486-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9770.t1 ID=Ggra9770.t1|Name=Ggra9770.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1542bp|location=Sequence derived from alignment at tig00000067_pilon:212945..214486- (Gracilaria gracilis GNS1m male)
ATGGCCCCTGAACTGCAGCCCCTTTCGTTCTCCCCCGTTCCCCAAGGATC
ACTGACCCACTTCCCAGAATCGCATCAGAAAGAGCTCGTGCAAATCTTCG
ATGTTCCCGCCAATCGAATCTCCTCCTGCACAGTAACACATGAGACCAGG
AAACTCTACAACACCATCCTTCTGTACGCTGCACTCTTCCCGAATACGCT
TGACTCCAACGATGCGCGCAGGTTCTTTGTTAATCATGAGGACCCTTATG
TCGACGCAAACACCGATGAAGACGACCACAGCCTATCCCGTCTTCGTCGC
AACAGGTTACTATCAATGTCGCCCGGCATTGCCCCTGGATCAGGAACAAG
GCGTCCCAAAGCCCCTCTCCCCAAGCTTCTGATGGATGTTGGGTCCACCG
TAGTCTGCTGGCCACCGCCAGAAGATCTCGTTCCACAATTTCTCATTTTG
AATGGCGACCATCAACCGTACAAACTTCCGGACGGAATGGGAGACAGTGT
TAGTCTTCATATCATGCACTATGAAATGGGAGCGCCTCTTAGCAGCTGTG
GGGAAGGAATAACCCCTCTACATGTCGTTCGCGTCTCCACTCATCATGGT
GATGAAGCCCTCCAGGAGTTCTTGAAGGGCATGTTGCAGTGGAATGTTGA
TCGAAGTAGTCCGGACCATCAAGGAAGGAAATACAATTTGTATAGATTCA
AATGCGATTCGTGTGGCGATGGCGAATGGGCTGAAGAAGGGGCTCGTCGC
GCACGCCCACATGATTCCGTTGTACTTGCTGATGGACAAATGGAAGGCAT
CATGGAAGACGTGGAACAGTTTCTACATCCGGATTCTAAGAGTTGGTACA
TAGAACATGGGCTTCCGCACAGGAGGAGTTACTTGTTCGAAGGAGTTCCT
GGCACTGGAAAGACAAGCACCATTCGCGTCCTTGCTGGGAAGTACTCTTT
GTCATGCTGTTTCCTTTCGATGACAAATGAGAAGTTTAGTAATCAACTGC
TCGGTGATGCCTTGAGTGGAGTACCATCGAACGCTGTGCTCGTCCTGGAA
GATGTGGACGCCCTGTTCAAGGGAGATCGATCCAGTGCCAACAGCTCATC
ACTAACATTCTCTGGGTTGCTCAATGCATTGGATGGAGTGACCAGTTCTG
AGGGTCTAATCACAATTATGACCACTAACCACGTTGATCGACTTGATCCT
GCTCTCATCCGGGGTGGTCGCGTTGATAGACGTTTTCGGTTCGTCCCGCC
CTCTGAAGGGCAGTTAGCTATATTGTTCAGATTGTTTTACAGAAACGCAA
GCGATGAGCAGGTGAACCAGTTTGTCGAAAGCCTTGTACGATGGGGAGAG
GACAATGAAGCTCCAACCATTGCTACATTGCAACAGTTGTTCATTCAATA
TCGTGGTCGTTCGGTTGAAATGTGCCTTGCAGCTCTACCGGGCTTTCTCT
CAGAATCTGCGGCGCATGCTGCCGTAGTCGAGGAACAGAAAGAGAAGCGA
ACAGAATTAAAGAAGGAGGAGGGAAATGAATCAAAGGAATAA
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Coding sequence (CDS) from alignment at tig00000067_pilon:212945..214486-

>Ggra9770.t1 ID=Ggra9770.t1|Name=Ggra9770.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1107bp|location=Sequence derived from alignment at tig00000067_pilon:212945..214486- (Gracilaria gracilis GNS1m male)
ATGGCCCCTGAACTGCAGCCCCTTTCGTTCTCCCCCGTTCCCCAAGGATC
ACTGACCCACTTCCCAGAATCGCATCAGAAAGAGCTCGTGCAAATCTTCG
ATGTTCCCGCCAATCGAATCTCCTCCTGCACAGTAACACATGAGACCAGG
AAACTCTACAACACCATCCTTCTGTACGCTGCACTCTTCCCGAATACGCT
TGACTCCAACGATGCGCGCAGGTTCTTTGTTAATCATGAGGACCCTTATG
TCGACGCAAACACCGATGAAGACGACCACAGCCTATCCCGTCTTCGTCGC
AACAGGTTACTATCAATGTCGCCCGGCATTGCCCCTGGATCAGGAACAAG
GCGTCCCAAAGCCCCTCTCCCCAAGCTTCTGATGGATGTTGGGTCCACCG
TAGTCTGCTGGCCACCGCCAGAAGATCTCGTTCCACAATTTCTCATTTTG
AATGGCGACCATCAACCGTACAAACTTCCGGACGGAATGGGAGACAGTGT
TAGTCTTCATATCATGCACTATGAAATGGGAGCGCCTCTTAGCAGCTGTG
GGGAAGGAATAACCCCTCTACATGTCGTTCGCGTCTCCACTCATCATGGT
GATGAAGCCCTCCAGGAGTTCTTGAAGGGCATGTTGCAGTGGAATGTTGA
TCGAAGTAGTCCGGACCATCAAGGAAGGAAATACAATTTGTATAGATTCA
AATGCGATTCTTCTGAGGGTCTAATCACAATTATGACCACTAACCACGTT
GATCGACTTGATCCTGCTCTCATCCGGGGTGGTCGCGTTGATAGACGTTT
TCGGTTCGTCCCGCCCTCTGAAGGGCAGTTAGCTATATTGTTCAGATTGT
TTTACAGAAACGCAAGCGATGAGCAGGTGAACCAGTTTGTCGAAAGCCTT
GTACGATGGGGAGAGGACAATGAAGCTCCAACCATTGCTACATTGCAACA
GTTGTTCATTCAATATCGTGGTCGTTCGGTTGAAATGTGCCTTGCAGCTC
TACCGGGCTTTCTCTCAGAATCTGCGGCGCATGCTGCCGTAGTCGAGGAA
CAGAAAGAGAAGCGAACAGAATTAAAGAAGGAGGAGGGAAATGAATCAAA
GGAATAA
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