Ggra9768.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9768.t1
Unique Name	Ggra9768.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	456

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000067_pilon	contig	tig00000067_pilon:120723..122090 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9768	Ggra9768	Gracilaria gracilis GNS1m male	gene	tig00000067_pilon 120723..122090 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9768.t1.start1	Ggra9768.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000067_pilon 120723..120725 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9768.t1.CDS1	Ggra9768.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000067_pilon 120723..122090 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9768.t1.exon1	Ggra9768.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000067_pilon 120723..122090 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9768.t1.stop1	Ggra9768.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000067_pilon 122088..122090 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9768.t1	Ggra9768.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000067_pilon 120723..122090 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000067_pilon:120723..122090+
coding sequence from alignment at tig00000067_pilon:120723..122090+

mRNA sequence

>Ggra9768.t1 ID=Ggra9768.t1|Name=Ggra9768.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=456bp
MFKATPSRLINLPPDILDAIVRKIFQDDSAQSHISCWHAWAASVAASHVE
LLRSVLRVAPGDVQRLQLLSRVRHLLVSVRARGLSRCSSGSLDDYVDDSE
PRKTANSVSQQRACSSNFGAFHEPATVYSPTVVYPTSVDNEHALQCEQRY
LLGTESANGEQHDHEADTSEYDDIQAGFASLRLQITSESVTTNVQIDSSQ
HNQQEQHMPFPDNNDERQFCEEGDTSNCVPANYDEFALQSESVQVSYRAY
DACESFSGFNREEYTVCDFQHGSGSLHEHLDDGCCAGLEQDEVGTAHDAG
YDREEYHNDEANTHVLDDLDFEAIVANVFDDGAFDNFGDAVDNVADDGVQ
DDGVVEQDFGDAIDNVADDGVHYDGVVEQEFDGGASENFDDAVDNVADDG
VHYDSVVEQELDGGALENFDDTVDNVANDGADDDCGAVVDEVCDDYDYNE
DNCND*

spliced messenger RNA

>Ggra9768.t1 ID=Ggra9768.t1|Name=Ggra9768.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1368bp|location=Sequence derived from alignment at tig00000067_pilon:120723..122090+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCAAAGCCACCCCGTCGCGGCTCATCAACTTGCCTCCGGACATTTT
GGACGCGATTGTGCGCAAAATCTTCCAGGATGACTCAGCACAAAGCCACA
TCTCTTGTTGGCACGCGTGGGCAGCCTCGGTCGCTGCTTCGCACGTGGAG
TTGTTGCGCTCGGTTCTTCGGGTCGCGCCTGGCGACGTTCAACGCCTGCA
GCTTCTCAGTCGTGTGCGTCATCTTCTGGTGTCTGTGCGTGCCCGAGGCT
TAAGTCGGTGCTCTTCTGGAAGCCTAGACGACTACGTTGATGATTCTGAG
CCGAGGAAAACAGCGAATTCTGTTTCGCAACAGCGTGCGTGTTCTTCCAA
CTTTGGTGCTTTTCATGAACCTGCCACAGTTTATTCGCCAACTGTCGTGT
ATCCCACGTCGGTAGACAATGAGCATGCACTTCAATGCGAACAACGCTAT
CTTCTGGGTACCGAGAGTGCGAATGGCGAGCAGCATGACCATGAAGCGGA
CACCAGCGAGTATGATGACATTCAGGCTGGCTTTGCTTCTCTTCGACTTC
AAATTACATCCGAATCAGTGACAACAAATGTCCAGATCGACTCCAGTCAA
CACAATCAGCAAGAGCAGCACATGCCCTTCCCCGACAATAATGATGAACG
TCAATTCTGTGAAGAAGGCGACACATCGAACTGTGTTCCTGCCAACTACG
ATGAATTTGCTTTGCAGAGTGAATCAGTGCAAGTTTCGTATCGAGCCTAT
GATGCGTGTGAGTCCTTTAGTGGCTTCAACCGTGAGGAATATACGGTTTG
TGACTTTCAGCACGGCTCTGGCTCGCTCCATGAACACCTTGATGATGGGT
GTTGCGCCGGTCTAGAACAAGATGAAGTTGGCACCGCACATGACGCTGGA
TATGACCGCGAAGAATACCATAATGACGAGGCAAACACACACGTTCTTGA
TGACCTTGATTTTGAGGCTATTGTTGCGAATGTATTTGACGATGGCGCTT
TTGATAATTTTGGCGATGCCGTTGACAATGTGGCTGATGATGGCGTTCAA
GATGACGGTGTTGTTGAGCAAGATTTTGGCGATGCCATTGACAATGTGGC
TGATGATGGCGTTCATTACGACGGTGTTGTTGAGCAAGAATTTGACGGTG
GCGCTTCAGAAAACTTTGACGATGCCGTTGACAATGTGGCTGATGATGGC
GTTCATTATGACAGTGTTGTTGAGCAAGAACTTGACGGTGGCGCTTTAGA
GAACTTTGATGATACCGTTGACAATGTTGCTAATGACGGCGCCGACGACG
ACTGTGGGGCAGTTGTGgatgaggtctgtgacgactacgactacaatgag
gataattgtaacgattag

protein sequence of Ggra9768.t1

>Ggra9768.t1 ID=Ggra9768.t1|Name=Ggra9768.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=456bp
MFKATPSRLINLPPDILDAIVRKIFQDDSAQSHISCWHAWAASVAASHVE
LLRSVLRVAPGDVQRLQLLSRVRHLLVSVRARGLSRCSSGSLDDYVDDSE
PRKTANSVSQQRACSSNFGAFHEPATVYSPTVVYPTSVDNEHALQCEQRY
LLGTESANGEQHDHEADTSEYDDIQAGFASLRLQITSESVTTNVQIDSSQ
HNQQEQHMPFPDNNDERQFCEEGDTSNCVPANYDEFALQSESVQVSYRAY
DACESFSGFNREEYTVCDFQHGSGSLHEHLDDGCCAGLEQDEVGTAHDAG
YDREEYHNDEANTHVLDDLDFEAIVANVFDDGAFDNFGDAVDNVADDGVQ
DDGVVEQDFGDAIDNVADDGVHYDGVVEQEFDGGASENFDDAVDNVADDG
VHYDSVVEQELDGGALENFDDTVDNVANDGADDDCGAVVDEVCDDYDYNE
DNCND*

mRNA from alignment at tig00000067_pilon:120723..122090+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9768.t1 ID=Ggra9768.t1|Name=Ggra9768.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1368bp|location=Sequence derived from alignment at tig00000067_pilon:120723..122090+ (Gracilaria gracilis GNS1m male)
ATGTTCAAAGCCACCCCGTCGCGGCTCATCAACTTGCCTCCGGACATTTT
GGACGCGATTGTGCGCAAAATCTTCCAGGATGACTCAGCACAAAGCCACA
TCTCTTGTTGGCACGCGTGGGCAGCCTCGGTCGCTGCTTCGCACGTGGAG
TTGTTGCGCTCGGTTCTTCGGGTCGCGCCTGGCGACGTTCAACGCCTGCA
GCTTCTCAGTCGTGTGCGTCATCTTCTGGTGTCTGTGCGTGCCCGAGGCT
TAAGTCGGTGCTCTTCTGGAAGCCTAGACGACTACGTTGATGATTCTGAG
CCGAGGAAAACAGCGAATTCTGTTTCGCAACAGCGTGCGTGTTCTTCCAA
CTTTGGTGCTTTTCATGAACCTGCCACAGTTTATTCGCCAACTGTCGTGT
ATCCCACGTCGGTAGACAATGAGCATGCACTTCAATGCGAACAACGCTAT
CTTCTGGGTACCGAGAGTGCGAATGGCGAGCAGCATGACCATGAAGCGGA
CACCAGCGAGTATGATGACATTCAGGCTGGCTTTGCTTCTCTTCGACTTC
AAATTACATCCGAATCAGTGACAACAAATGTCCAGATCGACTCCAGTCAA
CACAATCAGCAAGAGCAGCACATGCCCTTCCCCGACAATAATGATGAACG
TCAATTCTGTGAAGAAGGCGACACATCGAACTGTGTTCCTGCCAACTACG
ATGAATTTGCTTTGCAGAGTGAATCAGTGCAAGTTTCGTATCGAGCCTAT
GATGCGTGTGAGTCCTTTAGTGGCTTCAACCGTGAGGAATATACGGTTTG
TGACTTTCAGCACGGCTCTGGCTCGCTCCATGAACACCTTGATGATGGGT
GTTGCGCCGGTCTAGAACAAGATGAAGTTGGCACCGCACATGACGCTGGA
TATGACCGCGAAGAATACCATAATGACGAGGCAAACACACACGTTCTTGA
TGACCTTGATTTTGAGGCTATTGTTGCGAATGTATTTGACGATGGCGCTT
TTGATAATTTTGGCGATGCCGTTGACAATGTGGCTGATGATGGCGTTCAA
GATGACGGTGTTGTTGAGCAAGATTTTGGCGATGCCATTGACAATGTGGC
TGATGATGGCGTTCATTACGACGGTGTTGTTGAGCAAGAATTTGACGGTG
GCGCTTCAGAAAACTTTGACGATGCCGTTGACAATGTGGCTGATGATGGC
GTTCATTATGACAGTGTTGTTGAGCAAGAACTTGACGGTGGCGCTTTAGA
GAACTTTGATGATACCGTTGACAATGTTGCTAATGACGGCGCCGACGACG
ACTGTGGGGCAGTTGTGgatgaggtctgtgacgactacgactacaatgag
gataattgtaacgattag

Coding sequence (CDS) from alignment at tig00000067_pilon:120723..122090+

>Ggra9768.t1 ID=Ggra9768.t1|Name=Ggra9768.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1368bp|location=Sequence derived from alignment at tig00000067_pilon:120723..122090+ (Gracilaria gracilis GNS1m male)
ATGTTCAAAGCCACCCCGTCGCGGCTCATCAACTTGCCTCCGGACATTTT
GGACGCGATTGTGCGCAAAATCTTCCAGGATGACTCAGCACAAAGCCACA
TCTCTTGTTGGCACGCGTGGGCAGCCTCGGTCGCTGCTTCGCACGTGGAG
TTGTTGCGCTCGGTTCTTCGGGTCGCGCCTGGCGACGTTCAACGCCTGCA
GCTTCTCAGTCGTGTGCGTCATCTTCTGGTGTCTGTGCGTGCCCGAGGCT
TAAGTCGGTGCTCTTCTGGAAGCCTAGACGACTACGTTGATGATTCTGAG
CCGAGGAAAACAGCGAATTCTGTTTCGCAACAGCGTGCGTGTTCTTCCAA
CTTTGGTGCTTTTCATGAACCTGCCACAGTTTATTCGCCAACTGTCGTGT
ATCCCACGTCGGTAGACAATGAGCATGCACTTCAATGCGAACAACGCTAT
CTTCTGGGTACCGAGAGTGCGAATGGCGAGCAGCATGACCATGAAGCGGA
CACCAGCGAGTATGATGACATTCAGGCTGGCTTTGCTTCTCTTCGACTTC
AAATTACATCCGAATCAGTGACAACAAATGTCCAGATCGACTCCAGTCAA
CACAATCAGCAAGAGCAGCACATGCCCTTCCCCGACAATAATGATGAACG
TCAATTCTGTGAAGAAGGCGACACATCGAACTGTGTTCCTGCCAACTACG
ATGAATTTGCTTTGCAGAGTGAATCAGTGCAAGTTTCGTATCGAGCCTAT
GATGCGTGTGAGTCCTTTAGTGGCTTCAACCGTGAGGAATATACGGTTTG
TGACTTTCAGCACGGCTCTGGCTCGCTCCATGAACACCTTGATGATGGGT
GTTGCGCCGGTCTAGAACAAGATGAAGTTGGCACCGCACATGACGCTGGA
TATGACCGCGAAGAATACCATAATGACGAGGCAAACACACACGTTCTTGA
TGACCTTGATTTTGAGGCTATTGTTGCGAATGTATTTGACGATGGCGCTT
TTGATAATTTTGGCGATGCCGTTGACAATGTGGCTGATGATGGCGTTCAA
GATGACGGTGTTGTTGAGCAAGATTTTGGCGATGCCATTGACAATGTGGC
TGATGATGGCGTTCATTACGACGGTGTTGTTGAGCAAGAATTTGACGGTG
GCGCTTCAGAAAACTTTGACGATGCCGTTGACAATGTGGCTGATGATGGC
GTTCATTATGACAGTGTTGTTGAGCAAGAACTTGACGGTGGCGCTTTAGA
GAACTTTGATGATACCGTTGACAATGTTGCTAATGACGGCGCCGACGACG
ACTGTGGGGCAGTTGTGgatgaggtctgtgacgactacgactacaatgag
gataattgtaacgattag