Ggra9722.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9722.t1
Unique NameGgra9722.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length240
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000105_piloncontigtig00000105_pilon:160526..161346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9722Ggra9722Gracilaria gracilis GNS1m malegenetig00000105_pilon 160526..161346 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9722.t1Ggra9722.t1Gracilaria gracilis GNS1m malepolypeptidetig00000105_pilon 160526..161346 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9722.t1.stop1Ggra9722.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000105_pilon 160526..160528 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9722.t1.CDS1Ggra9722.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000105_pilon 160526..160974 -
Ggra9722.t1.CDS2Ggra9722.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000105_pilon 161076..161346 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9722.t1.exon1Ggra9722.t1.exon1Gracilaria gracilis GNS1m maleexontig00000105_pilon 160526..160974 -
Ggra9722.t1.exon2Ggra9722.t1.exon2Gracilaria gracilis GNS1m maleexontig00000105_pilon 161076..161346 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9722.t1.intron1Ggra9722.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000105_pilon 160975..161075 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9722.t1.start1Ggra9722.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000105_pilon 161344..161346 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9722.t1 ID=Ggra9722.t1|Name=Ggra9722.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=240bp
MDIHSSGAYHFNHSGARFYTAARKEDVEKLKGDQRPPKFGKPSDEYSRAH
GRHYGSHGLRLLMNYLKHNLEFAVTPGSPLGPDLRILALYPASEVYHRFK
THGGFFHNLGNTSPFVLSHLFNLELRFVRTYFLKFGSISSGRNVLYLVQL
AHDGVRAPVKFRHVVVVDGYAVFILDSNERHALRLNQTSLCLCTGGHPKY
FRAVELHELVFKRGHNHHGFLLASPQMNDIFPFRGFFWL*
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spliced messenger RNA

>Ggra9722.t1 ID=Ggra9722.t1|Name=Ggra9722.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=720bp|location=Sequence derived from alignment at tig00000105_pilon:160526..161346- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATATTCATTCCTCGGGGGCCTATCATTTCAACCACAGCGGTGCCCG
ATTCTACACCGCCGCCAGGAAAGAGGATGTTGAGAAACTAAAAGGAGACC
AACGCCCTCCGAAATTCGGTAAGCCTTCAGATGAGTACTCAAGAGCTCAT
GGTCGCCATTATGGTTCTCATGGCTTACGGTTATTAATGAACTACTTGAA
ACATAATCTTGAATTTGCAGTCACCCCAGGCTCCCCGCTGGGGCCAGACC
TGAGGATATTAGCATTATACCCGGCCTCCGAGGTGTACCATAGGTTTAAA
ACTCATGGTGGGTTCTTCCACAACCTTGGAAATACTAGCCCATTTGTGCT
CAGCCACCTCTTCAACCTCGAGCTACGATTCGTTCGAACCTACTTCCTGA
AATTTGGCTCGATTTCTTCCGGTAGGAACGTTCTGTACTTAGTGCAACTC
GCGCACGATGGCGTTCGAGCGCCCGTGAAGTTTCGTCACGTGGTTGTCGT
GGATGGCTACGCCGTTTTCATTCTGGACAGCAACGAGCGGCATGCGCTTC
GCCTTAACCAAACTTCTCTCTGTCTTTGCACGGGAGGTCATCCTAAGTAC
TTTCGCGCAGTTGAATTACATGAGTTAGTGTTCAAACGCGGCCATAACCA
TCACGGTTTCCTCCTGGCTAGTCCTCAAATGAATGACATATTCCCCTTCC
GTGGCTTCTTTTGGCTCTGA
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protein sequence of Ggra9722.t1

>Ggra9722.t1 ID=Ggra9722.t1|Name=Ggra9722.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=240bp
MDIHSSGAYHFNHSGARFYTAARKEDVEKLKGDQRPPKFGKPSDEYSRAH
GRHYGSHGLRLLMNYLKHNLEFAVTPGSPLGPDLRILALYPASEVYHRFK
THGGFFHNLGNTSPFVLSHLFNLELRFVRTYFLKFGSISSGRNVLYLVQL
AHDGVRAPVKFRHVVVVDGYAVFILDSNERHALRLNQTSLCLCTGGHPKY
FRAVELHELVFKRGHNHHGFLLASPQMNDIFPFRGFFWL*
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mRNA from alignment at tig00000105_pilon:160526..161346-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9722.t1 ID=Ggra9722.t1|Name=Ggra9722.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=821bp|location=Sequence derived from alignment at tig00000105_pilon:160526..161346- (Gracilaria gracilis GNS1m male)
ATGGATATTCATTCCTCGGGGGCCTATCATTTCAACCACAGCGGTGCCCG
ATTCTACACCGCCGCCAGGAAAGAGGATGTTGAGAAACTAAAAGGAGACC
AACGCCCTCCGAAATTCGGTAAGCCTTCAGATGAGTACTCAAGAGCTCAT
GGTCGCCATTATGGTTCTCATGGCTTACGGTTATTAATGAACTACTTGAA
ACATAATCTTGAATTTGCAGTCACCCCAGGCTCCCCGCTGGGGCCAGACC
TGAGGATATTAGCATTATACCGTACGTTTTGAAGCACTCTCGCATCTCTG
CAAGCTCGAATGCACCTCACTGCATTGCTCCTGCCATGGCAAACGCGGTT
GACAGTTTTTTGCGGGACGCAGCGGCCTCCGAGGTGTACCATAGGTTTAA
AACTCATGGTGGGTTCTTCCACAACCTTGGAAATACTAGCCCATTTGTGC
TCAGCCACCTCTTCAACCTCGAGCTACGATTCGTTCGAACCTACTTCCTG
AAATTTGGCTCGATTTCTTCCGGTAGGAACGTTCTGTACTTAGTGCAACT
CGCGCACGATGGCGTTCGAGCGCCCGTGAAGTTTCGTCACGTGGTTGTCG
TGGATGGCTACGCCGTTTTCATTCTGGACAGCAACGAGCGGCATGCGCTT
CGCCTTAACCAAACTTCTCTCTGTCTTTGCACGGGAGGTCATCCTAAGTA
CTTTCGCGCAGTTGAATTACATGAGTTAGTGTTCAAACGCGGCCATAACC
ATCACGGTTTCCTCCTGGCTAGTCCTCAAATGAATGACATATTCCCCTTC
CGTGGCTTCTTTTGGCTCTGA
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Coding sequence (CDS) from alignment at tig00000105_pilon:160526..161346-

>Ggra9722.t1 ID=Ggra9722.t1|Name=Ggra9722.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=720bp|location=Sequence derived from alignment at tig00000105_pilon:160526..161346- (Gracilaria gracilis GNS1m male)
ATGGATATTCATTCCTCGGGGGCCTATCATTTCAACCACAGCGGTGCCCG
ATTCTACACCGCCGCCAGGAAAGAGGATGTTGAGAAACTAAAAGGAGACC
AACGCCCTCCGAAATTCGGTAAGCCTTCAGATGAGTACTCAAGAGCTCAT
GGTCGCCATTATGGTTCTCATGGCTTACGGTTATTAATGAACTACTTGAA
ACATAATCTTGAATTTGCAGTCACCCCAGGCTCCCCGCTGGGGCCAGACC
TGAGGATATTAGCATTATACCCGGCCTCCGAGGTGTACCATAGGTTTAAA
ACTCATGGTGGGTTCTTCCACAACCTTGGAAATACTAGCCCATTTGTGCT
CAGCCACCTCTTCAACCTCGAGCTACGATTCGTTCGAACCTACTTCCTGA
AATTTGGCTCGATTTCTTCCGGTAGGAACGTTCTGTACTTAGTGCAACTC
GCGCACGATGGCGTTCGAGCGCCCGTGAAGTTTCGTCACGTGGTTGTCGT
GGATGGCTACGCCGTTTTCATTCTGGACAGCAACGAGCGGCATGCGCTTC
GCCTTAACCAAACTTCTCTCTGTCTTTGCACGGGAGGTCATCCTAAGTAC
TTTCGCGCAGTTGAATTACATGAGTTAGTGTTCAAACGCGGCCATAACCA
TCACGGTTTCCTCCTGGCTAGTCCTCAAATGAATGACATATTCCCCTTCC
GTGGCTTCTTTTGGCTCTGA
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