Ggra9637.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9637.t1
Unique NameGgra9637.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length300
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000150_piloncontigtig00000150_pilon:287933..289443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709324.1
Preferred nameTYR1
PFAMsPDH
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017,RC00125
KEGG koko:K00211,ko:K00852,ko:K12586,ko:K15227
KEGG ReactionR00733,R01051,R01730,R02750
KEGG Pathwayko00030,ko00400,ko01100,ko01110,ko01130,ko01230,ko03018,map00030,map00400,map01100,map01110,map01130,map01230,map03018
KEGG ModuleM00040,M00391
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006570,GO:0006571,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008977,GO:0009058,GO:0009072,GO:0009073,GO:0009095,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019438,GO:0019752,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0070403,GO:0071704,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue2.86e-105
EggNOG OGsCOG0287@1|root,KOG2380@2759|Eukaryota
EC1.3.1.13,1.3.1.78,2.7.1.15
Descriptionprephenate dehydrogenase (NADP ) activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9637Ggra9637Gracilaria gracilis GNS1m malegenetig00000150_pilon 287933..289443 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9637.t1Ggra9637.t1Gracilaria gracilis GNS1m malepolypeptidetig00000150_pilon 287933..289443 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9637.t1.stop1Ggra9637.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000150_pilon 287933..287935 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9637.t1.CDS1Ggra9637.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000150_pilon 287933..288017 -
Ggra9637.t1.CDS2Ggra9637.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000150_pilon 288324..288552 -
Ggra9637.t1.CDS3Ggra9637.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000150_pilon 288648..288955 -
Ggra9637.t1.CDS4Ggra9637.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000150_pilon 289046..289210 -
Ggra9637.t1.CDS5Ggra9637.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000150_pilon 289331..289443 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9637.t1.exon1Ggra9637.t1.exon1Gracilaria gracilis GNS1m maleexontig00000150_pilon 287933..288017 -
Ggra9637.t1.exon2Ggra9637.t1.exon2Gracilaria gracilis GNS1m maleexontig00000150_pilon 288324..288552 -
Ggra9637.t1.exon3Ggra9637.t1.exon3Gracilaria gracilis GNS1m maleexontig00000150_pilon 288648..288955 -
Ggra9637.t1.exon4Ggra9637.t1.exon4Gracilaria gracilis GNS1m maleexontig00000150_pilon 289046..289210 -
Ggra9637.t1.exon5Ggra9637.t1.exon5Gracilaria gracilis GNS1m maleexontig00000150_pilon 289331..289443 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9637.t1.intron1Ggra9637.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000150_pilon 288018..288323 -
Ggra9637.t1.intron2Ggra9637.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000150_pilon 288553..288647 -
Ggra9637.t1.intron3Ggra9637.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000150_pilon 288956..289045 -
Ggra9637.t1.intron4Ggra9637.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000150_pilon 289211..289330 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9637.t1.start1Ggra9637.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000150_pilon 289441..289443 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9637.t1 ID=Ggra9637.t1|Name=Ggra9637.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=300bp
MSFENQCQPPSKRLTIGIVGFGNFGQFLGKRFASQGHRVIGQSRGNYFEA
AKAIGCEYVQHAEKLMDREPDVVIFCTSIMSLSTVLSHFPLKKLANTLVV
DVLSVKLYPHDLLLKCLPASSNIVCTHPMFGPESGKYSWKGLPFVYDIVR
VNPKHQSVCDAFIDIWRAEGCAMVSMDCATHDKHAASTQFLTHTTGRMLA
QLHVESTPINTRGYESLLGVVDTTCKDSFALYYGLYKYNPNARQELDNME
AALKDIRKMLDLAEENEAQRKNSLNRVGRTMAISDEVLRSLIMRATTRT*
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spliced messenger RNA

>Ggra9637.t1 ID=Ggra9637.t1|Name=Ggra9637.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00000150_pilon:287933..289443- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTTTGAAAACCAGTGTCAGCCGCCCTCAAAGCGCCTTACCATTGG
TATCGTTGGCTTCGGAAACTTTGGTCAGTTTCTGGGTAAGAGGTTTGCGT
CACAAGGTCATCGCGTTATTGGCCAAAGCCGGGGGAATTACTTCGAAGCT
GCCAAGGCTATCGGCTGTGAATACGTCCAGCATGCAGAGAAGCTCATGGA
CCGTGAGCCCGATGTCGTTATTTTCTGCACAAGTATAATGTCATTGTCCA
CCGTTCTCTCTCACTTTCCACTCAAGAAGCTTGCGAACACGTTAGTGGTG
GATGTGCTTTCCGTCAAGCTCTATCCCCATGATCTCCTTTTGAAATGCCT
ACCCGCATCATCCAATATCGTTTGCACGCATCCTATGTTCGGTCCAGAAA
GTGGGAAATATTCTTGGAAGGGTCTGCCCTTCGTTTACGACATTGTTCGC
GTAAACCCAAAGCATCAAAGCGTTTGTGACGCGTTCATCGACATCTGGAG
AGCTGAAGGATGCGCTATGGTTTCTATGGACTGCGCTACACATGACAAAC
ATGCAGCCTCAACCCAGTTTCTCACACACACAACAGGCCGTATGCTTGCC
CAGTTGCATGTGGAATCCACCCCAATTAACACAAGGGGTTATGAATCACT
CCTGGGAGTGGTGGATACAACCTGCAAGGACAGCTTTGCCTTGTACTACG
GTTTATACAAGTACAACCCAAACGCGAGACAGGAGTTGGACAACATGGAA
GCGGCCCTCAAGGACATTAGGAAAATGCTTGACCTGGCTGAGGAGAACGA
GGCTCAAAGAAAAAATTCTCTCAACAGAGTCGGACGCACCATGGCTATTT
CTGACGAAGTATTGCGAAGTCTAATCATGCGAGCTACCACACGCACTTAA
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protein sequence of Ggra9637.t1

>Ggra9637.t1 ID=Ggra9637.t1|Name=Ggra9637.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=300bp
MSFENQCQPPSKRLTIGIVGFGNFGQFLGKRFASQGHRVIGQSRGNYFEA
AKAIGCEYVQHAEKLMDREPDVVIFCTSIMSLSTVLSHFPLKKLANTLVV
DVLSVKLYPHDLLLKCLPASSNIVCTHPMFGPESGKYSWKGLPFVYDIVR
VNPKHQSVCDAFIDIWRAEGCAMVSMDCATHDKHAASTQFLTHTTGRMLA
QLHVESTPINTRGYESLLGVVDTTCKDSFALYYGLYKYNPNARQELDNME
AALKDIRKMLDLAEENEAQRKNSLNRVGRTMAISDEVLRSLIMRATTRT*
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mRNA from alignment at tig00000150_pilon:287933..289443-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9637.t1 ID=Ggra9637.t1|Name=Ggra9637.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1511bp|location=Sequence derived from alignment at tig00000150_pilon:287933..289443- (Gracilaria gracilis GNS1m male)
ATGTCGTTTGAAAACCAGTGTCAGCCGCCCTCAAAGCGCCTTACCATTGG
TATCGTTGGCTTCGGAAACTTTGGTCAGTTTCTGGGTAAGAGGTTTGCGT
CACAAGGTCATCGGTATGCTTTCGTGCTTTCCAATTCTTTCGTAGCGCGC
GTTTTTGCTGTATCATCGATCAACTCACTGACTAACTAAACCCCATTCTT
ACCGCCCTTTGCCATTGCCTTGCACATCCACAGCGTTATTGGCCAAAGCC
GGGGGAATTACTTCGAAGCTGCCAAGGCTATCGGCTGTGAATACGTCCAG
CATGCAGAGAAGCTCATGGACCGTGAGCCCGATGTCGTTATTTTCTGCAC
AAGTATAATGTCATTGTCCACCGTTCTCTCTCACTTTCCACTCAAGAAGT
AAGTCATTTCCGGAACCAGTTTTCAACCGTGCCGCGGGCGACAACAGCGA
ACTAACATCCATGCGCAACTCTATTTCAAACCACAAAGGCTTGCGAACAC
GTTAGTGGTGGATGTGCTTTCCGTCAAGCTCTATCCCCATGATCTCCTTT
TGAAATGCCTACCCGCATCATCCAATATCGTTTGCACGCATCCTATGTTC
GGTCCAGAAAGTGGGAAATATTCTTGGAAGGGTCTGCCCTTCGTTTACGA
CATTGTTCGCGTAAACCCAAAGCATCAAAGCGTTTGTGACGCGTTCATCG
ACATCTGGAGAGCTGAAGGATGCGCTATGGTTTCTATGGACTGCGCTACA
CATGACAAACATGCAGCCTCAACCCAGTTTCTCACACACACAACAGGTTC
GTTCTTGCTTACGTCGCGCACATGCTAATCATCTCGTACACATGTTGACT
AATACGATTTGATCAACTTCCTGCCACTTTTTCATATACAGGCCGTATGC
TTGCCCAGTTGCATGTGGAATCCACCCCAATTAACACAAGGGGTTATGAA
TCACTCCTGGGAGTGGTGGATACAACCTGCAAGGACAGCTTTGCCTTGTA
CTACGGTTTATACAAGTACAACCCAAACGCGAGACAGGAGTTGGACAACA
TGGAAGCGGCCCTCAAGGACATTAGGAAAATGCTTGACCTGGCTGAGGAG
AACGAGGCTCAAAGAAAAAAGTAATGACATTTCATTTCCACTCGTTCGCC
TAGAAAGTACAAGTTGCTTAGCAAGCCTGGTAATGGGCAACGGCAGATCC
GCGACGCAAGACAGGGTGTGGTTCACACCTCACCAGCTTGTAGAAGGGGA
AGGATTACGCACATCGTCATGGGCAGCCCCCTTAATCCTACGTCGACAAG
TTGAGACTGCCCATGGTCTGTGATGATTCATCATCACGGTCATGAGCCAT
GCAGCTTTTCATCTTTCACCAGGGACATCCTACTAACCTTATTCTTTGTA
TGTAATGTTCTCGGTCCCGCAAGCAGTTCTCTCAACAGAGTCGGACGCAC
CATGGCTATTTCTGACGAAGTATTGCGAAGTCTAATCATGCGAGCTACCA
CACGCACTTAA
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Coding sequence (CDS) from alignment at tig00000150_pilon:287933..289443-

>Ggra9637.t1 ID=Ggra9637.t1|Name=Ggra9637.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=900bp|location=Sequence derived from alignment at tig00000150_pilon:287933..289443- (Gracilaria gracilis GNS1m male)
ATGTCGTTTGAAAACCAGTGTCAGCCGCCCTCAAAGCGCCTTACCATTGG
TATCGTTGGCTTCGGAAACTTTGGTCAGTTTCTGGGTAAGAGGTTTGCGT
CACAAGGTCATCGCGTTATTGGCCAAAGCCGGGGGAATTACTTCGAAGCT
GCCAAGGCTATCGGCTGTGAATACGTCCAGCATGCAGAGAAGCTCATGGA
CCGTGAGCCCGATGTCGTTATTTTCTGCACAAGTATAATGTCATTGTCCA
CCGTTCTCTCTCACTTTCCACTCAAGAAGCTTGCGAACACGTTAGTGGTG
GATGTGCTTTCCGTCAAGCTCTATCCCCATGATCTCCTTTTGAAATGCCT
ACCCGCATCATCCAATATCGTTTGCACGCATCCTATGTTCGGTCCAGAAA
GTGGGAAATATTCTTGGAAGGGTCTGCCCTTCGTTTACGACATTGTTCGC
GTAAACCCAAAGCATCAAAGCGTTTGTGACGCGTTCATCGACATCTGGAG
AGCTGAAGGATGCGCTATGGTTTCTATGGACTGCGCTACACATGACAAAC
ATGCAGCCTCAACCCAGTTTCTCACACACACAACAGGCCGTATGCTTGCC
CAGTTGCATGTGGAATCCACCCCAATTAACACAAGGGGTTATGAATCACT
CCTGGGAGTGGTGGATACAACCTGCAAGGACAGCTTTGCCTTGTACTACG
GTTTATACAAGTACAACCCAAACGCGAGACAGGAGTTGGACAACATGGAA
GCGGCCCTCAAGGACATTAGGAAAATGCTTGACCTGGCTGAGGAGAACGA
GGCTCAAAGAAAAAATTCTCTCAACAGAGTCGGACGCACCATGGCTATTT
CTGACGAAGTATTGCGAAGTCTAATCATGCGAGCTACCACACGCACTTAA
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