Ggra9539.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9539.t1
Unique Name	Ggra9539.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	316

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000150_pilon	contig	tig00000150_pilon:4087..5034 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	400682.PAC_15718712
Preferred name	DHRS7
PFAMs	adh_short
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K11165
Evalue	7e-49
EggNOG OGs	COG1028@1\|root,KOG1205@2759\|Eukaryota,38HW1@33154\|Opisthokonta,3BFJM@33208\|Metazoa
Description	oxidoreductase activity
COG category	Q
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9539	Ggra9539	Gracilaria gracilis GNS1m male	gene	tig00000150_pilon 4087..5034 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9539.t1.start1	Ggra9539.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000150_pilon 4087..4089 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9539.t1.CDS1	Ggra9539.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000150_pilon 4087..5034 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9539.t1.exon1	Ggra9539.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000150_pilon 4087..5034 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9539.t1.stop1	Ggra9539.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000150_pilon 5032..5034 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9539.t1	Ggra9539.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000150_pilon 4087..5034 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000150_pilon:4087..5034+
coding sequence from alignment at tig00000150_pilon:4087..5034+

mRNA sequence

>Ggra9539.t1 ID=Ggra9539.t1|Name=Ggra9539.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=316bp
MPLIGVLGISCIAAGAWLAHRVFRFLTGDCDLKTLSARINPRSFRSKVVW
ITGASTGIGAALAVHLAKHGALLILTSRNEEKLNELADQLPCPRDFVFVL
PLDLSSKISHVEEVASSVSAIFGRLDYVFNNAGISCRATAFDMEMESVQK
MMQVNFLSAVALTRACMRSLREAPGGGGTIVNTVSIASIICPPHRAPYCA
SKAAMAAYFNSLSWEEPSIRVVNIHPGSVHTPVSQNALVAGGKLYGKTDP
SIETGLDPGRVADRMLAAVSAGLASSWIAKPKELMATRMATWLPWLWAII
ASKRAESFRRRVEGS*

spliced messenger RNA

>Ggra9539.t1 ID=Ggra9539.t1|Name=Ggra9539.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=948bp|location=Sequence derived from alignment at tig00000150_pilon:4087..5034+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCCTCATTGGAGTCCTCGGCATTTCTTGTATCGCAGCTGGGGCCTG
GCTTGCGCACCGTGTCTTCCGTTTCCTCACCGGCGATTGTGACCTAAAGA
CCTTGTCCGCGCGAATCAACCCTCGCTCATTTCGCAGCAAAGTCGTGTGG
ATAACTGGCGCCAGCACCGGTATTGGAGCTGCGTTGGCCGTTCATCTTGC
CAAGCACGGTGCCCTGCTCATCCTCACGTCCCGAAATGAAGAAAAGCTCA
ACGAATTAGCAGACCAACTTCCATGTCCGAGAGATTTTGTATTCGTTTTA
CCACTAGACTTGTCGTCTAAGATCTCACATGTCGAGGAAGTTGCAAGCAG
CGTATCTGCCATTTTCGGCAGGCTTGACTACGTGTTTAACAATGCCGGCA
TTTCTTGTCGAGCTACTGCATTTGACATGGAAATGGAAAGCGTGCAAAAG
ATGATGCAGGTCAACTTCTTGTCCGCCGTGGCCTTGACCAGAGCATGTAT
GCGTTCACTACGTGAGGCACCCGGTGGTGGCGGTACCATCGTCAACACTG
TTTCGATTGCATCCATTATTTGTCCGCCTCACCGTGCCCCATACTGTGCC
TCAAAGGCTGCGATGGCGGCATACTTCAACTCTCTCAGTTGGGAGGAACC
TAGTATTCGTGTTGTCAACATACATCCCGGCAGCGTTCATACCCCTGTCT
CGCAAAATGCCCTGGTTGCGGGTGGGAAGCTTTATGGTAAGACTGACCCC
AGCATTGAGACAGGTCTTGACCCAGGGCGAGTTGCGGACAGGATGCTTGC
CGCGGTTTCAGCTGGTCTTGCATCCTCATGGATTGCCAAACCCAAAGAGC
TCATGGCCACACGTATGGCCACTTGGTTGCCGTGGCTATGGGCTATCATT
GCTTCGAAAAGAGCCGAATCGTTCCGAAGAAGAGTCGAGGGCTCATAG

protein sequence of Ggra9539.t1

>Ggra9539.t1 ID=Ggra9539.t1|Name=Ggra9539.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=316bp
MPLIGVLGISCIAAGAWLAHRVFRFLTGDCDLKTLSARINPRSFRSKVVW
ITGASTGIGAALAVHLAKHGALLILTSRNEEKLNELADQLPCPRDFVFVL
PLDLSSKISHVEEVASSVSAIFGRLDYVFNNAGISCRATAFDMEMESVQK
MMQVNFLSAVALTRACMRSLREAPGGGGTIVNTVSIASIICPPHRAPYCA
SKAAMAAYFNSLSWEEPSIRVVNIHPGSVHTPVSQNALVAGGKLYGKTDP
SIETGLDPGRVADRMLAAVSAGLASSWIAKPKELMATRMATWLPWLWAII
ASKRAESFRRRVEGS*

mRNA from alignment at tig00000150_pilon:4087..5034+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9539.t1 ID=Ggra9539.t1|Name=Ggra9539.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=948bp|location=Sequence derived from alignment at tig00000150_pilon:4087..5034+ (Gracilaria gracilis GNS1m male)
ATGCCCCTCATTGGAGTCCTCGGCATTTCTTGTATCGCAGCTGGGGCCTG
GCTTGCGCACCGTGTCTTCCGTTTCCTCACCGGCGATTGTGACCTAAAGA
CCTTGTCCGCGCGAATCAACCCTCGCTCATTTCGCAGCAAAGTCGTGTGG
ATAACTGGCGCCAGCACCGGTATTGGAGCTGCGTTGGCCGTTCATCTTGC
CAAGCACGGTGCCCTGCTCATCCTCACGTCCCGAAATGAAGAAAAGCTCA
ACGAATTAGCAGACCAACTTCCATGTCCGAGAGATTTTGTATTCGTTTTA
CCACTAGACTTGTCGTCTAAGATCTCACATGTCGAGGAAGTTGCAAGCAG
CGTATCTGCCATTTTCGGCAGGCTTGACTACGTGTTTAACAATGCCGGCA
TTTCTTGTCGAGCTACTGCATTTGACATGGAAATGGAAAGCGTGCAAAAG
ATGATGCAGGTCAACTTCTTGTCCGCCGTGGCCTTGACCAGAGCATGTAT
GCGTTCACTACGTGAGGCACCCGGTGGTGGCGGTACCATCGTCAACACTG
TTTCGATTGCATCCATTATTTGTCCGCCTCACCGTGCCCCATACTGTGCC
TCAAAGGCTGCGATGGCGGCATACTTCAACTCTCTCAGTTGGGAGGAACC
TAGTATTCGTGTTGTCAACATACATCCCGGCAGCGTTCATACCCCTGTCT
CGCAAAATGCCCTGGTTGCGGGTGGGAAGCTTTATGGTAAGACTGACCCC
AGCATTGAGACAGGTCTTGACCCAGGGCGAGTTGCGGACAGGATGCTTGC
CGCGGTTTCAGCTGGTCTTGCATCCTCATGGATTGCCAAACCCAAAGAGC
TCATGGCCACACGTATGGCCACTTGGTTGCCGTGGCTATGGGCTATCATT
GCTTCGAAAAGAGCCGAATCGTTCCGAAGAAGAGTCGAGGGCTCATAG

Coding sequence (CDS) from alignment at tig00000150_pilon:4087..5034+

>Ggra9539.t1 ID=Ggra9539.t1|Name=Ggra9539.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=948bp|location=Sequence derived from alignment at tig00000150_pilon:4087..5034+ (Gracilaria gracilis GNS1m male)
ATGCCCCTCATTGGAGTCCTCGGCATTTCTTGTATCGCAGCTGGGGCCTG
GCTTGCGCACCGTGTCTTCCGTTTCCTCACCGGCGATTGTGACCTAAAGA
CCTTGTCCGCGCGAATCAACCCTCGCTCATTTCGCAGCAAAGTCGTGTGG
ATAACTGGCGCCAGCACCGGTATTGGAGCTGCGTTGGCCGTTCATCTTGC
CAAGCACGGTGCCCTGCTCATCCTCACGTCCCGAAATGAAGAAAAGCTCA
ACGAATTAGCAGACCAACTTCCATGTCCGAGAGATTTTGTATTCGTTTTA
CCACTAGACTTGTCGTCTAAGATCTCACATGTCGAGGAAGTTGCAAGCAG
CGTATCTGCCATTTTCGGCAGGCTTGACTACGTGTTTAACAATGCCGGCA
TTTCTTGTCGAGCTACTGCATTTGACATGGAAATGGAAAGCGTGCAAAAG
ATGATGCAGGTCAACTTCTTGTCCGCCGTGGCCTTGACCAGAGCATGTAT
GCGTTCACTACGTGAGGCACCCGGTGGTGGCGGTACCATCGTCAACACTG
TTTCGATTGCATCCATTATTTGTCCGCCTCACCGTGCCCCATACTGTGCC
TCAAAGGCTGCGATGGCGGCATACTTCAACTCTCTCAGTTGGGAGGAACC
TAGTATTCGTGTTGTCAACATACATCCCGGCAGCGTTCATACCCCTGTCT
CGCAAAATGCCCTGGTTGCGGGTGGGAAGCTTTATGGTAAGACTGACCCC
AGCATTGAGACAGGTCTTGACCCAGGGCGAGTTGCGGACAGGATGCTTGC
CGCGGTTTCAGCTGGTCTTGCATCCTCATGGATTGCCAAACCCAAAGAGC
TCATGGCCACACGTATGGCCACTTGGTTGCCGTGGCTATGGGCTATCATT
GCTTCGAAAAGAGCCGAATCGTTCCGAAGAAGAGTCGAGGGCTCATAG