Ggra9507.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9507.t1
Unique NameGgra9507.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length332
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:342715..343845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3694.POPTR_0007s09740.1
PFAMsUIM,VWA_2
Max annot lvl35493|Streptophyta
KEGG koko:K03029
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
GOsGO:0000003,GO:0000502,GO:0001101,GO:0001653,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006970,GO:0006974,GO:0007154,GO:0007165,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009555,GO:0009628,GO:0009651,GO:0009653,GO:0009719,GO:0009725,GO:0009733,GO:0009735,GO:0009737,GO:0009743,GO:0009744,GO:0009791,GO:0009888,GO:0009908,GO:0009987,GO:0010015,GO:0010029,GO:0010033,GO:0010053,GO:0010054,GO:0010150,GO:0010498,GO:0016020,GO:0016043,GO:0016049,GO:0019538,GO:0019941,GO:0021700,GO:0022414,GO:0022607,GO:0022622,GO:0023052,GO:0030154,GO:0030163,GO:0031593,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0033993,GO:0034285,GO:0034622,GO:0035966,GO:0038023,GO:0040007,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043248,GO:0043632,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048229,GO:0048364,GO:0048366,GO:0048367,GO:0048437,GO:0048438,GO:0048443,GO:0048444,GO:0048448,GO:0048449,GO:0048455,GO:0048466,GO:0048468,GO:0048469,GO:0048528,GO:0048580,GO:0048588,GO:0048589,GO:0048608,GO:0048646,GO:0048731,GO:0048764,GO:0048765,GO:0048767,GO:0048827,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051239,GO:0051603,GO:0051716,GO:0051788,GO:0060089,GO:0060560,GO:0061458,GO:0065003,GO:0065007,GO:0071695,GO:0071704,GO:0071840,GO:0080147,GO:0090558,GO:0090567,GO:0090627,GO:0090693,GO:0090696,GO:0090697,GO:0090698,GO:0097305,GO:0099402,GO:0140030,GO:1900140,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1902494,GO:1905368,GO:1905369,GO:1905392,GO:1905393,GO:2000026
Evalue9.1e-76
EggNOG OGsCOG5148@1|root,KOG2884@2759|Eukaryota,37JJ9@33090|Viridiplantae,3GCVU@35493|Streptophyta,4JF95@91835|fabids
Description26S proteasome non-atpase regulatory subunit
COG categoryO
BRITEko00000,ko00001,ko00002,ko03051
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9507Ggra9507Gracilaria gracilis GNS1m malegenetig00000873_pilon 342715..343845 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9507.t1Ggra9507.t1Gracilaria gracilis GNS1m malepolypeptidetig00000873_pilon 342715..343845 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9507.t1.start1Ggra9507.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000873_pilon 342715..342717 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9507.t1.CDS1Ggra9507.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000873_pilon 342715..342792 +
Ggra9507.t1.CDS2Ggra9507.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000873_pilon 342928..343845 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9507.t1.exon1Ggra9507.t1.exon1Gracilaria gracilis GNS1m maleexontig00000873_pilon 342715..342792 +
Ggra9507.t1.exon2Ggra9507.t1.exon2Gracilaria gracilis GNS1m maleexontig00000873_pilon 342928..343845 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9507.t1.intron1Ggra9507.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000873_pilon 342793..342927 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9507.t1.stop1Ggra9507.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000873_pilon 343843..343845 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9507.t1 ID=Ggra9507.t1|Name=Ggra9507.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=332bp
MGLEATIICVDNSEFSRNGDFAPSRFAVQVDSVNMLCSAKVQANAESCVG
LLTLAGRSARILVTSTRDLGRIFTCMHDVKFDGEANFLAGIQKAQLALKH
RQNSLQRQRIVVFVSSPLLADVDSLVKLGKNLKKNSVSVDVIDIGLEGEN
RQKIDAFIDAVNSNDNSRALHVDAGGQNLADALMNSDIYMERDSGGGSGG
GGTSGGTGDAAAGNFPYGVDPAEDPELAMVLRISMEEERARQARAAQEAA
ESGGDGATNNDDNKPSDADASKGKYDDNDEDLYGTGENMDVDHDEDAEML
RRAIELSKASTEPANGSSSDKKDDDDKKESS*
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spliced messenger RNA

>Ggra9507.t1 ID=Ggra9507.t1|Name=Ggra9507.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=996bp|location=Sequence derived from alignment at tig00000873_pilon:342715..343845+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCCTGGAAGCCACCATCATTTGCGTCGACAACTCCGAGTTTAGTCG
GAATGGCGACTTTGCGCCTTCCAGATTTGCTGTACAAGTTGACTCGGTCA
ACATGTTGTGCTCAGCAAAGGTTCAGGCCAATGCGGAAAGCTGCGTGGGA
TTGCTCACTCTCGCAGGTCGCAGCGCGCGCATTCTTGTAACATCTACGCG
TGATCTTGGTCGAATCTTTACATGCATGCACGACGTGAAGTTTGACGGCG
AAGCCAACTTCCTGGCGGGAATCCAAAAGGCGCAATTGGCACTCAAGCAT
CGACAGAACTCGCTGCAGCGACAACGTATTGTTGTATTTGTGAGCAGTCC
GTTGTTGGCTGACGTAGACTCGCTCGTGAAGCTTGGAAAGAATCTGAAGA
AAAACTCTGTGTCAGTTGACGTCATCGACATTGGCCTTGAGGGTGAGAAC
CGGCAAAAGATCGACGCTTTCATTGATGCTGTTAACTCCAATGATAATTC
CAGGGCTCTCCATGTTGATGCTGGAGGTCAGAACTTAGCAGACGCGCTCA
TGAACTCTGATATCTACATGGAACGTGATAgcggcggcggcagcggcggc
ggcggAACCAGTGGAGGTACTGGAGATGCTGCTGCGGGTAACTTCCCGTA
CGGTGTTGACCCTGCTGAAGACCCAGAGCTTGCGATGGTTCTGAGAATTT
CAATGGAGGAGGAGCGAGCCAGACAAGCTCGAGCAGCTCAAGAGGCCGCC
GAGAGTGGGGGTGATGGAGCTACAAATAATGACGACAACAAACCTAGCGA
CGCTGATGCATCCAAGGGTAAATATGATGATAACGACGAAGATCTGTATG
GAACAGGAGAGAACATGGATGTTGACCATGATGAAGACGCAGAAATGCTA
AGGCGAGCAATTGAACTTTCGAAAGCGTCGACAGAGCCTGCGAACGGAAG
CTCTTCAGATAAGAAAGATGATGACGATAAGAAGGAAAGTTCATAA
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protein sequence of Ggra9507.t1

>Ggra9507.t1 ID=Ggra9507.t1|Name=Ggra9507.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=332bp
MGLEATIICVDNSEFSRNGDFAPSRFAVQVDSVNMLCSAKVQANAESCVG
LLTLAGRSARILVTSTRDLGRIFTCMHDVKFDGEANFLAGIQKAQLALKH
RQNSLQRQRIVVFVSSPLLADVDSLVKLGKNLKKNSVSVDVIDIGLEGEN
RQKIDAFIDAVNSNDNSRALHVDAGGQNLADALMNSDIYMERDSGGGSGG
GGTSGGTGDAAAGNFPYGVDPAEDPELAMVLRISMEEERARQARAAQEAA
ESGGDGATNNDDNKPSDADASKGKYDDNDEDLYGTGENMDVDHDEDAEML
RRAIELSKASTEPANGSSSDKKDDDDKKESS*
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mRNA from alignment at tig00000873_pilon:342715..343845+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9507.t1 ID=Ggra9507.t1|Name=Ggra9507.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1131bp|location=Sequence derived from alignment at tig00000873_pilon:342715..343845+ (Gracilaria gracilis GNS1m male)
ATGGGCCTGGAAGCCACCATCATTTGCGTCGACAACTCCGAGTTTAGTCG
GAATGGCGACTTTGCGCCTTCCAGATTTGTAAGTGATTCTGCTGTCTAGT
TCCTTCTGAAGAAAGCCAATGCCCTCTTCAGTTACCAGAACTGTCGCTGA
TTGAATGTGATCATGACTGACAATATCGTTATCTCCAATGACACGCGAAT
TCACTGCCGCTAGGCTGTACAAGTTGACTCGGTCAACATGTTGTGCTCAG
CAAAGGTTCAGGCCAATGCGGAAAGCTGCGTGGGATTGCTCACTCTCGCA
GGTCGCAGCGCGCGCATTCTTGTAACATCTACGCGTGATCTTGGTCGAAT
CTTTACATGCATGCACGACGTGAAGTTTGACGGCGAAGCCAACTTCCTGG
CGGGAATCCAAAAGGCGCAATTGGCACTCAAGCATCGACAGAACTCGCTG
CAGCGACAACGTATTGTTGTATTTGTGAGCAGTCCGTTGTTGGCTGACGT
AGACTCGCTCGTGAAGCTTGGAAAGAATCTGAAGAAAAACTCTGTGTCAG
TTGACGTCATCGACATTGGCCTTGAGGGTGAGAACCGGCAAAAGATCGAC
GCTTTCATTGATGCTGTTAACTCCAATGATAATTCCAGGGCTCTCCATGT
TGATGCTGGAGGTCAGAACTTAGCAGACGCGCTCATGAACTCTGATATCT
ACATGGAACGTGATAgcggcggcggcagcggcggcggcggAACCAGTGGA
GGTACTGGAGATGCTGCTGCGGGTAACTTCCCGTACGGTGTTGACCCTGC
TGAAGACCCAGAGCTTGCGATGGTTCTGAGAATTTCAATGGAGGAGGAGC
GAGCCAGACAAGCTCGAGCAGCTCAAGAGGCCGCCGAGAGTGGGGGTGAT
GGAGCTACAAATAATGACGACAACAAACCTAGCGACGCTGATGCATCCAA
GGGTAAATATGATGATAACGACGAAGATCTGTATGGAACAGGAGAGAACA
TGGATGTTGACCATGATGAAGACGCAGAAATGCTAAGGCGAGCAATTGAA
CTTTCGAAAGCGTCGACAGAGCCTGCGAACGGAAGCTCTTCAGATAAGAA
AGATGATGACGATAAGAAGGAAAGTTCATAA
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Coding sequence (CDS) from alignment at tig00000873_pilon:342715..343845+

>Ggra9507.t1 ID=Ggra9507.t1|Name=Ggra9507.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=996bp|location=Sequence derived from alignment at tig00000873_pilon:342715..343845+ (Gracilaria gracilis GNS1m male)
ATGGGCCTGGAAGCCACCATCATTTGCGTCGACAACTCCGAGTTTAGTCG
GAATGGCGACTTTGCGCCTTCCAGATTTGCTGTACAAGTTGACTCGGTCA
ACATGTTGTGCTCAGCAAAGGTTCAGGCCAATGCGGAAAGCTGCGTGGGA
TTGCTCACTCTCGCAGGTCGCAGCGCGCGCATTCTTGTAACATCTACGCG
TGATCTTGGTCGAATCTTTACATGCATGCACGACGTGAAGTTTGACGGCG
AAGCCAACTTCCTGGCGGGAATCCAAAAGGCGCAATTGGCACTCAAGCAT
CGACAGAACTCGCTGCAGCGACAACGTATTGTTGTATTTGTGAGCAGTCC
GTTGTTGGCTGACGTAGACTCGCTCGTGAAGCTTGGAAAGAATCTGAAGA
AAAACTCTGTGTCAGTTGACGTCATCGACATTGGCCTTGAGGGTGAGAAC
CGGCAAAAGATCGACGCTTTCATTGATGCTGTTAACTCCAATGATAATTC
CAGGGCTCTCCATGTTGATGCTGGAGGTCAGAACTTAGCAGACGCGCTCA
TGAACTCTGATATCTACATGGAACGTGATAgcggcggcggcagcggcggc
ggcggAACCAGTGGAGGTACTGGAGATGCTGCTGCGGGTAACTTCCCGTA
CGGTGTTGACCCTGCTGAAGACCCAGAGCTTGCGATGGTTCTGAGAATTT
CAATGGAGGAGGAGCGAGCCAGACAAGCTCGAGCAGCTCAAGAGGCCGCC
GAGAGTGGGGGTGATGGAGCTACAAATAATGACGACAACAAACCTAGCGA
CGCTGATGCATCCAAGGGTAAATATGATGATAACGACGAAGATCTGTATG
GAACAGGAGAGAACATGGATGTTGACCATGATGAAGACGCAGAAATGCTA
AGGCGAGCAATTGAACTTTCGAAAGCGTCGACAGAGCCTGCGAACGGAAG
CTCTTCAGATAAGAAAGATGATGACGATAAGAAGGAAAGTTCATAA
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