Ggra9499.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9499.t1
Unique NameGgra9499.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length231
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:293354..294298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3983.cassava4.1_016768m
PFAMsSUI1
Max annot lvl35493|Streptophyta
GOsGO:0001731,GO:0002181,GO:0002183,GO:0002188,GO:0002190,GO:0002192,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0065003,GO:0070992,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0110017,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue3.43e-29
EggNOG OGsCOG0023@1|root,KOG3239@2759|Eukaryota,37PW1@33090|Viridiplantae,3GEVS@35493|Streptophyta,4JKWZ@91835|fabids
DescriptionTranslation machinery-associated protein
COG categoryJ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9499Ggra9499Gracilaria gracilis GNS1m malegenetig00000873_pilon 293354..294298 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9499.t1Ggra9499.t1Gracilaria gracilis GNS1m malepolypeptidetig00000873_pilon 293354..294298 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9499.t1.stop1Ggra9499.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000873_pilon 293354..293356 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9499.t1.CDS1Ggra9499.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000873_pilon 293354..293416 -
Ggra9499.t1.CDS2Ggra9499.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000873_pilon 293505..293585 -
Ggra9499.t1.CDS3Ggra9499.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000873_pilon 293674..294028 -
Ggra9499.t1.CDS4Ggra9499.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000873_pilon 294105..294298 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9499.t1.exon1Ggra9499.t1.exon1Gracilaria gracilis GNS1m maleexontig00000873_pilon 293354..293416 -
Ggra9499.t1.exon2Ggra9499.t1.exon2Gracilaria gracilis GNS1m maleexontig00000873_pilon 293505..293585 -
Ggra9499.t1.exon3Ggra9499.t1.exon3Gracilaria gracilis GNS1m maleexontig00000873_pilon 293674..294028 -
Ggra9499.t1.exon4Ggra9499.t1.exon4Gracilaria gracilis GNS1m maleexontig00000873_pilon 294105..294298 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9499.t1.intron1Ggra9499.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000873_pilon 293417..293504 -
Ggra9499.t1.intron2Ggra9499.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000873_pilon 293586..293673 -
Ggra9499.t1.intron3Ggra9499.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000873_pilon 294029..294104 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9499.t1.start1Ggra9499.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000873_pilon 294296..294298 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9499.t1 ID=Ggra9499.t1|Name=Ggra9499.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=231bp
MDVASPPDESAIASSSAGPSQPPPAEDAVSEPVADDRYPLSVLYCSVCTL
PAELHEYHSRSQFEKCTEWLRHNAPQYFPKLFPDECAARLEALKLAEQTG
VSPPLLPCEQPQPDAPKVAVPIEQKTSGGKKKKTPAHIILALGQRKGKKQ
VTIVYGLDLFGIKLKDAAKAAKRKFATGSSITVSPDNREVIEIQGSRQQD
FAQLVHAEWGVPKDAIFVVNAQKKKVKAFP*
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spliced messenger RNA

>Ggra9499.t1 ID=Ggra9499.t1|Name=Ggra9499.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=693bp|location=Sequence derived from alignment at tig00000873_pilon:293354..294298- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGTCGCTTCTCCTCCCGATGAAAGTGCCATCGCGTCGTCGTCGGC
GGGACCCTCACAACCACCGCCCGCTGAAGACGCTGTTTCTGAACCGGTTG
CCGATGACCGATATCCACTAAGTGTGCTTTATTGTAGCGTTTGCACCCTT
CCTGCAGAACTTCATGAGTATCATTCTCGCTCTCAGTTTGAAAAATGTAC
CGAATGGTTACGTCACAATGCGCCGCAATACTTTCCAAAGTTGTTTCCGG
ATGAATGCGCTGCTCGATTAGAGGCGTTGAAACTTGCGGAACAGACTGGC
GTGTCACCGCCTTTGTTACCATGCGAACAACCTCAACCGGATGCTCCAAA
GGTTGCGGTCCCTATTGAACAAAAGACAAGTGGTGGGAAAAAGAAAAAGA
CCCCTGCACATATCATTCTTGCACTTGGTCAGCGAAAAGGGAAGAAGCAG
GTTACCATCGTGTATGGCTTGGATCTGTTCGGTATCAAATTGAAGGATGC
TGCAAAGGCGGCAAAGCGCAAATTTGCAACAGGCTCTTCAATCACAGTGT
CACCTGATAATCGTGAGGTTATTGAGATACAGGGTTCCCGACAGCAAGAC
TTTGCACAACTAGTTCACGCAGAGTGGGGTGTGCCAAAGGACGCAATCTT
TGTCGTCAACGCGCAGAAGAAGAAAGTCAAGGCGTTTCCTTGA
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protein sequence of Ggra9499.t1

>Ggra9499.t1 ID=Ggra9499.t1|Name=Ggra9499.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=231bp
MDVASPPDESAIASSSAGPSQPPPAEDAVSEPVADDRYPLSVLYCSVCTL
PAELHEYHSRSQFEKCTEWLRHNAPQYFPKLFPDECAARLEALKLAEQTG
VSPPLLPCEQPQPDAPKVAVPIEQKTSGGKKKKTPAHIILALGQRKGKKQ
VTIVYGLDLFGIKLKDAAKAAKRKFATGSSITVSPDNREVIEIQGSRQQD
FAQLVHAEWGVPKDAIFVVNAQKKKVKAFP*
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mRNA from alignment at tig00000873_pilon:293354..294298-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9499.t1 ID=Ggra9499.t1|Name=Ggra9499.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=945bp|location=Sequence derived from alignment at tig00000873_pilon:293354..294298- (Gracilaria gracilis GNS1m male)
ATGGATGTCGCTTCTCCTCCCGATGAAAGTGCCATCGCGTCGTCGTCGGC
GGGACCCTCACAACCACCGCCCGCTGAAGACGCTGTTTCTGAACCGGTTG
CCGATGACCGATATCCACTAAGTGTGCTTTATTGTAGCGTTTGCACCCTT
CCTGCAGAACTTCATGAGTATCATTCTCGCTCTCAGTTTGAAAAGTAAGC
TTTCCTCTCGTCAAGTCCGGTTATACACGCTACAAATCATGTCTAACTCG
GTTCGATTGTTATGTGTTAGATGTACCGAATGGTTACGTCACAATGCGCC
GCAATACTTTCCAAAGTTGTTTCCGGATGAATGCGCTGCTCGATTAGAGG
CGTTGAAACTTGCGGAACAGACTGGCGTGTCACCGCCTTTGTTACCATGC
GAACAACCTCAACCGGATGCTCCAAAGGTTGCGGTCCCTATTGAACAAAA
GACAAGTGGTGGGAAAAAGAAAAAGACCCCTGCACATATCATTCTTGCAC
TTGGTCAGCGAAAAGGGAAGAAGCAGGTTACCATCGTGTATGGCTTGGAT
CTGTTCGGTATCAAATTGAAGGATGCTGCAAAGGCGGCAAAGCGCAAATT
TGCAACAGGCTCTTCAATCACAGTGGTACGTCTTTTTTCTTGTTCCAGGT
TGCGATTCTATGCTTGTATATGCTTTTATGTGTCATGATTACCAACATCT
GTTCGTTTTTCAGTCACCTGATAATCGTGAGGTTATTGAGATACAGGGTT
CCCGACAGCAAGACTTTGCACAACTAGTTCACGCAGAGTGGGGTGTACGT
TGGTTGCTACATTTTTCTCCGTCTGAGTTCGCTCTACTCACACCTTGTAT
GCGGTATACTATTTCGTCTGTTCTTTTCACAGGTGCCAAAGGACGCAATC
TTTGTCGTCAACGCGCAGAAGAAGAAAGTCAAGGCGTTTCCTTGA
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Coding sequence (CDS) from alignment at tig00000873_pilon:293354..294298-

>Ggra9499.t1 ID=Ggra9499.t1|Name=Ggra9499.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=693bp|location=Sequence derived from alignment at tig00000873_pilon:293354..294298- (Gracilaria gracilis GNS1m male)
ATGGATGTCGCTTCTCCTCCCGATGAAAGTGCCATCGCGTCGTCGTCGGC
GGGACCCTCACAACCACCGCCCGCTGAAGACGCTGTTTCTGAACCGGTTG
CCGATGACCGATATCCACTAAGTGTGCTTTATTGTAGCGTTTGCACCCTT
CCTGCAGAACTTCATGAGTATCATTCTCGCTCTCAGTTTGAAAAATGTAC
CGAATGGTTACGTCACAATGCGCCGCAATACTTTCCAAAGTTGTTTCCGG
ATGAATGCGCTGCTCGATTAGAGGCGTTGAAACTTGCGGAACAGACTGGC
GTGTCACCGCCTTTGTTACCATGCGAACAACCTCAACCGGATGCTCCAAA
GGTTGCGGTCCCTATTGAACAAAAGACAAGTGGTGGGAAAAAGAAAAAGA
CCCCTGCACATATCATTCTTGCACTTGGTCAGCGAAAAGGGAAGAAGCAG
GTTACCATCGTGTATGGCTTGGATCTGTTCGGTATCAAATTGAAGGATGC
TGCAAAGGCGGCAAAGCGCAAATTTGCAACAGGCTCTTCAATCACAGTGT
CACCTGATAATCGTGAGGTTATTGAGATACAGGGTTCCCGACAGCAAGAC
TTTGCACAACTAGTTCACGCAGAGTGGGGTGTGCCAAAGGACGCAATCTT
TGTCGTCAACGCGCAGAAGAAGAAAGTCAAGGCGTTTCCTTGA
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