Ggra9498.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9498.t1
Unique Name	Ggra9498.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	591

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000873_pilon	contig	tig00000873_pilon:291495..293267 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9498	Ggra9498	Gracilaria gracilis GNS1m male	gene	tig00000873_pilon 291495..293267 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9498.t1.start1	Ggra9498.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000873_pilon 291495..291497 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9498.t1.CDS1	Ggra9498.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000873_pilon 291495..293267 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9498.t1.exon1	Ggra9498.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000873_pilon 291495..293267 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9498.t1.stop1	Ggra9498.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000873_pilon 293265..293267 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9498.t1	Ggra9498.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000873_pilon 291495..293267 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000873_pilon:291495..293267+
coding sequence from alignment at tig00000873_pilon:291495..293267+

mRNA sequence

>Ggra9498.t1 ID=Ggra9498.t1|Name=Ggra9498.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=591bp
MSASHLAALHSRIQQLEADNASLASAAEQAAVLAEEYAADAARYRHSQNH
TEQRLHDEISDASRRKDRRIHRLNALLSEEKDRVQQLEQRVEQLGQLYDV
STQMEATLQASVSALQQQMEDSSQSVRPVGDASFLLHTIRAQYAAVPLEL
LNSYFPQPDPLAGDIRAYQLFLRAHSIHTIATYTQQHTLNPVPDPQQSSS
SQQTFVQNALHLFGKLAWVMQDLLAWCFEKADDMPHRAVKLYEATLTLEQ
RAANVFEQLFEMQQQRISTSCTPEYGTMNTELLEMAMDAVTDLLPSSSIS
ASSRGKETDLSALIQQGAEERARIVREGLINASRNAEASDQLEGKLNAAR
TKLRQRESELDDMKVRLSVYEDRMTKAREDAKLVETLKTQVSKLEEEVAE
ATIRDTPSESVRTIAEANSMTSQGKHTSQADNETSSTDQAIHSSKSCIAT
PLAQLQQVQDVIHVRRQLLRTYLSDIQSDTSTSRQPRVDLHSMLHVRDTL
SHALNDLRTAAANASVVTLHTDTLSVKRSGKSMSQKILLQAMAASCSNED
TLKQWRIERERVCDSKTVKIEVSNDEMASTLKLMRNAISL*

spliced messenger RNA

>Ggra9498.t1 ID=Ggra9498.t1|Name=Ggra9498.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1773bp|location=Sequence derived from alignment at tig00000873_pilon:291495..293267+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atgtccgcttctcaccttgccgcgctgcactcccgaatcCAACAACTTGA
AGCGGACAACGCCAGTCTAGCAAGTGCAGCTGAGCAAGCAGCCGTCCTCG
CCGAAGAATACGCTGCTGATGCCGCCCGTTATCGACACTCTCAAAACCAC
ACCGAACAACGACTTCATGATGAAATTTCGGACGCCTCTCGAAGAAAGGA
TCGTCGAATCCATCGTCTCAACGCCCTTTTATCCGAGGAGAAGGATCGAG
TGCAACAGTTAGAGCAGCGTGTAGAACAATTGGGACAACTTTATGACGTC
TCCACCCAGATGGAAGCCACGTTACAAGCTTCGGTTAGCGCTCTCCAACA
ACAAATGGAAGACTCTTCTCAATCGGTGCGGCCCGTCGGAGACGCTTCTT
TTCTTCTTCATACTATTCGTGCACAGTATGCTGCCGTTCCCCTTGAACTT
CTCAATTCGTATTTTCCACAGCCCGACCCCCTTGCCGGTGATATCAGGGC
GTATCAACTTTTTCTTCGCGCGCACTCAATCCATACCATCGCTACCTATA
CCCAGCAGCACACCCTAAATCCTGTCCCCGATCCACAGCAGTCGTCCTCA
TCACAACAAACTTTTGTTCAAAATGCACTACATCTATTCGGGAAACTGGC
GTGGGTTATGCAAGACCTACTCGCATGGTGTTTCGAAAAAGCAGATGACA
TGCCGCACCGAGCTGTCAAACTATACGAAGCCACACTCACTCTGGAGCAA
CGTGCCGCAAACGTTTTTGAACAGCTGTTTGAGATGCAACAGCAGCGCAT
CAGTACCTCCTGTACTCCAGAGTATGGGACTATGAACACCGAACTACTTG
AAATGGCAATGGATGCCGTCACGGACTTGCTTCCTTCGTCCTCAATTTCT
GCATCATCGCGAGGGAAAGAAACTGATTTGAGCGCGCTCATCCAACAAGG
AGCAGAAGAGCGCGCTCGGATCGTACGCGAGGGTCTCATCAATGCCAGCC
GAAATGCAGAAGCCTCCGACCAGTTAGAAGGCAAGTTGAACGCCGCGCGC
ACCAAGTTGCGACAACGCGAGAGCGAATTGGATGATATGAAAGTTCGTCT
CAGCGTGTACGAAGACAGAATGACCAAAGCGCGAGAAGACGCAAAGCTGG
TGGAGACATTGAAAACTCAGGTGTCGAAACTTGAGGAAGAGGTCGCCGAA
GCAACCATTCGTGACACACCAAGTGAGAGCGTGCGAACCATAGCAGAAGC
AAACAGCATGACGTCACAGGGTAAACACACATCGCAAGCCGATAATGAAA
CAAGTAGTACGGACCAAGCGATACATTCGTCTAAGAGCTGTATAGCAACA
CCACTGGCACAACTACAACAAGTACAAGACGTGATCCATGTACGACGACA
ACTACTCCGCACGTACCTCAGCGACATACAATCCGACACGAGCACATCGA
GACAGCCACGAGTCGACTTGCACAGCATGTTACATGTTCGTGATACGCTT
TCACATGCACTGAATGATTTACGCACAGCAGCAGCAAATGCAAGTGTGGT
AACCCTTCACACCGATACATTGAGCGTGAAACGCAGTGGCAAAAGTATGT
CGCAAAAGATTCTGTTGCAGGCTATGGCGGCTAGCTGTTCGAATGAGGAC
ACGTTGAAACAATGGCGCATTGAACGTGAACGAGTTTGTGATAGCAAGAC
GGTCAAGATAGAAGTAAGCAATGACGAGATGGCGTCGACGTTGAAGTTGA
TGCGCAATGCGATAAGTCTGTGA

protein sequence of Ggra9498.t1

>Ggra9498.t1 ID=Ggra9498.t1|Name=Ggra9498.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=591bp
MSASHLAALHSRIQQLEADNASLASAAEQAAVLAEEYAADAARYRHSQNH
TEQRLHDEISDASRRKDRRIHRLNALLSEEKDRVQQLEQRVEQLGQLYDV
STQMEATLQASVSALQQQMEDSSQSVRPVGDASFLLHTIRAQYAAVPLEL
LNSYFPQPDPLAGDIRAYQLFLRAHSIHTIATYTQQHTLNPVPDPQQSSS
SQQTFVQNALHLFGKLAWVMQDLLAWCFEKADDMPHRAVKLYEATLTLEQ
RAANVFEQLFEMQQQRISTSCTPEYGTMNTELLEMAMDAVTDLLPSSSIS
ASSRGKETDLSALIQQGAEERARIVREGLINASRNAEASDQLEGKLNAAR
TKLRQRESELDDMKVRLSVYEDRMTKAREDAKLVETLKTQVSKLEEEVAE
ATIRDTPSESVRTIAEANSMTSQGKHTSQADNETSSTDQAIHSSKSCIAT
PLAQLQQVQDVIHVRRQLLRTYLSDIQSDTSTSRQPRVDLHSMLHVRDTL
SHALNDLRTAAANASVVTLHTDTLSVKRSGKSMSQKILLQAMAASCSNED
TLKQWRIERERVCDSKTVKIEVSNDEMASTLKLMRNAISL*

mRNA from alignment at tig00000873_pilon:291495..293267+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9498.t1 ID=Ggra9498.t1|Name=Ggra9498.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1773bp|location=Sequence derived from alignment at tig00000873_pilon:291495..293267+ (Gracilaria gracilis GNS1m male)
atgtccgcttctcaccttgccgcgctgcactcccgaatcCAACAACTTGA
AGCGGACAACGCCAGTCTAGCAAGTGCAGCTGAGCAAGCAGCCGTCCTCG
CCGAAGAATACGCTGCTGATGCCGCCCGTTATCGACACTCTCAAAACCAC
ACCGAACAACGACTTCATGATGAAATTTCGGACGCCTCTCGAAGAAAGGA
TCGTCGAATCCATCGTCTCAACGCCCTTTTATCCGAGGAGAAGGATCGAG
TGCAACAGTTAGAGCAGCGTGTAGAACAATTGGGACAACTTTATGACGTC
TCCACCCAGATGGAAGCCACGTTACAAGCTTCGGTTAGCGCTCTCCAACA
ACAAATGGAAGACTCTTCTCAATCGGTGCGGCCCGTCGGAGACGCTTCTT
TTCTTCTTCATACTATTCGTGCACAGTATGCTGCCGTTCCCCTTGAACTT
CTCAATTCGTATTTTCCACAGCCCGACCCCCTTGCCGGTGATATCAGGGC
GTATCAACTTTTTCTTCGCGCGCACTCAATCCATACCATCGCTACCTATA
CCCAGCAGCACACCCTAAATCCTGTCCCCGATCCACAGCAGTCGTCCTCA
TCACAACAAACTTTTGTTCAAAATGCACTACATCTATTCGGGAAACTGGC
GTGGGTTATGCAAGACCTACTCGCATGGTGTTTCGAAAAAGCAGATGACA
TGCCGCACCGAGCTGTCAAACTATACGAAGCCACACTCACTCTGGAGCAA
CGTGCCGCAAACGTTTTTGAACAGCTGTTTGAGATGCAACAGCAGCGCAT
CAGTACCTCCTGTACTCCAGAGTATGGGACTATGAACACCGAACTACTTG
AAATGGCAATGGATGCCGTCACGGACTTGCTTCCTTCGTCCTCAATTTCT
GCATCATCGCGAGGGAAAGAAACTGATTTGAGCGCGCTCATCCAACAAGG
AGCAGAAGAGCGCGCTCGGATCGTACGCGAGGGTCTCATCAATGCCAGCC
GAAATGCAGAAGCCTCCGACCAGTTAGAAGGCAAGTTGAACGCCGCGCGC
ACCAAGTTGCGACAACGCGAGAGCGAATTGGATGATATGAAAGTTCGTCT
CAGCGTGTACGAAGACAGAATGACCAAAGCGCGAGAAGACGCAAAGCTGG
TGGAGACATTGAAAACTCAGGTGTCGAAACTTGAGGAAGAGGTCGCCGAA
GCAACCATTCGTGACACACCAAGTGAGAGCGTGCGAACCATAGCAGAAGC
AAACAGCATGACGTCACAGGGTAAACACACATCGCAAGCCGATAATGAAA
CAAGTAGTACGGACCAAGCGATACATTCGTCTAAGAGCTGTATAGCAACA
CCACTGGCACAACTACAACAAGTACAAGACGTGATCCATGTACGACGACA
ACTACTCCGCACGTACCTCAGCGACATACAATCCGACACGAGCACATCGA
GACAGCCACGAGTCGACTTGCACAGCATGTTACATGTTCGTGATACGCTT
TCACATGCACTGAATGATTTACGCACAGCAGCAGCAAATGCAAGTGTGGT
AACCCTTCACACCGATACATTGAGCGTGAAACGCAGTGGCAAAAGTATGT
CGCAAAAGATTCTGTTGCAGGCTATGGCGGCTAGCTGTTCGAATGAGGAC
ACGTTGAAACAATGGCGCATTGAACGTGAACGAGTTTGTGATAGCAAGAC
GGTCAAGATAGAAGTAAGCAATGACGAGATGGCGTCGACGTTGAAGTTGA
TGCGCAATGCGATAAGTCTGTGA

Coding sequence (CDS) from alignment at tig00000873_pilon:291495..293267+

>Ggra9498.t1 ID=Ggra9498.t1|Name=Ggra9498.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1773bp|location=Sequence derived from alignment at tig00000873_pilon:291495..293267+ (Gracilaria gracilis GNS1m male)
atgtccgcttctcaccttgccgcgctgcactcccgaatcCAACAACTTGA
AGCGGACAACGCCAGTCTAGCAAGTGCAGCTGAGCAAGCAGCCGTCCTCG
CCGAAGAATACGCTGCTGATGCCGCCCGTTATCGACACTCTCAAAACCAC
ACCGAACAACGACTTCATGATGAAATTTCGGACGCCTCTCGAAGAAAGGA
TCGTCGAATCCATCGTCTCAACGCCCTTTTATCCGAGGAGAAGGATCGAG
TGCAACAGTTAGAGCAGCGTGTAGAACAATTGGGACAACTTTATGACGTC
TCCACCCAGATGGAAGCCACGTTACAAGCTTCGGTTAGCGCTCTCCAACA
ACAAATGGAAGACTCTTCTCAATCGGTGCGGCCCGTCGGAGACGCTTCTT
TTCTTCTTCATACTATTCGTGCACAGTATGCTGCCGTTCCCCTTGAACTT
CTCAATTCGTATTTTCCACAGCCCGACCCCCTTGCCGGTGATATCAGGGC
GTATCAACTTTTTCTTCGCGCGCACTCAATCCATACCATCGCTACCTATA
CCCAGCAGCACACCCTAAATCCTGTCCCCGATCCACAGCAGTCGTCCTCA
TCACAACAAACTTTTGTTCAAAATGCACTACATCTATTCGGGAAACTGGC
GTGGGTTATGCAAGACCTACTCGCATGGTGTTTCGAAAAAGCAGATGACA
TGCCGCACCGAGCTGTCAAACTATACGAAGCCACACTCACTCTGGAGCAA
CGTGCCGCAAACGTTTTTGAACAGCTGTTTGAGATGCAACAGCAGCGCAT
CAGTACCTCCTGTACTCCAGAGTATGGGACTATGAACACCGAACTACTTG
AAATGGCAATGGATGCCGTCACGGACTTGCTTCCTTCGTCCTCAATTTCT
GCATCATCGCGAGGGAAAGAAACTGATTTGAGCGCGCTCATCCAACAAGG
AGCAGAAGAGCGCGCTCGGATCGTACGCGAGGGTCTCATCAATGCCAGCC
GAAATGCAGAAGCCTCCGACCAGTTAGAAGGCAAGTTGAACGCCGCGCGC
ACCAAGTTGCGACAACGCGAGAGCGAATTGGATGATATGAAAGTTCGTCT
CAGCGTGTACGAAGACAGAATGACCAAAGCGCGAGAAGACGCAAAGCTGG
TGGAGACATTGAAAACTCAGGTGTCGAAACTTGAGGAAGAGGTCGCCGAA
GCAACCATTCGTGACACACCAAGTGAGAGCGTGCGAACCATAGCAGAAGC
AAACAGCATGACGTCACAGGGTAAACACACATCGCAAGCCGATAATGAAA
CAAGTAGTACGGACCAAGCGATACATTCGTCTAAGAGCTGTATAGCAACA
CCACTGGCACAACTACAACAAGTACAAGACGTGATCCATGTACGACGACA
ACTACTCCGCACGTACCTCAGCGACATACAATCCGACACGAGCACATCGA
GACAGCCACGAGTCGACTTGCACAGCATGTTACATGTTCGTGATACGCTT
TCACATGCACTGAATGATTTACGCACAGCAGCAGCAAATGCAAGTGTGGT
AACCCTTCACACCGATACATTGAGCGTGAAACGCAGTGGCAAAAGTATGT
CGCAAAAGATTCTGTTGCAGGCTATGGCGGCTAGCTGTTCGAATGAGGAC
ACGTTGAAACAATGGCGCATTGAACGTGAACGAGTTTGTGATAGCAAGAC
GGTCAAGATAGAAGTAAGCAATGACGAGATGGCGTCGACGTTGAAGTTGA
TGCGCAATGCGATAAGTCTGTGA