Ggra9496.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9496.t1
Unique NameGgra9496.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length358
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:285109..286182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9496Ggra9496Gracilaria gracilis GNS1m malegenetig00000873_pilon 285109..286182 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9496.t1.stop1Ggra9496.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000873_pilon 285109..285111 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9496.t1.CDS1Ggra9496.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000873_pilon 285109..286182 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9496.t1.exon1Ggra9496.t1.exon1Gracilaria gracilis GNS1m maleexontig00000873_pilon 285109..286182 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9496.t1.start1Ggra9496.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000873_pilon 286180..286182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9496.t1Ggra9496.t1Gracilaria gracilis GNS1m malepolypeptidetig00000873_pilon 285109..286182 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9496.t1 ID=Ggra9496.t1|Name=Ggra9496.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=358bp
MRVPPFYIKKPSSSLHRCSPTASSARRFDGEPSAYSADNSCSSDHHHQYS
LPSSRVGDRLAKSRATGQNHRDSEREHIIYLLTAIENGRLENALLFVMFS
HAYKRDRMLRFGATHSIAASARGAAAAAAAAAANAHHWHVGCDSTEDNVQ
RLRPLLYPVSPSCQLMLGQSMVSGATASALLELLMHRRNMWGTTHAVRAR
ALDADGRRPRRPPYRAATTAHDAEAVVHFATRLYCREMAIDRTNKYAICD
HVQQRLGNLAMAAYNVDHIEATVNPTYSLSQFVYEDHYDVLPPSPTTPDT
AEFGSPLKIRRVEGAKRCTRCGVLKFAGSGHGRSKCADGFSISSHVPYRP
PPTFAQY*
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spliced messenger RNA

>Ggra9496.t1 ID=Ggra9496.t1|Name=Ggra9496.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1074bp|location=Sequence derived from alignment at tig00000873_pilon:285109..286182- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGTGCCGCCCTTCTACATCAAGAAGCCGTCCTCTTCGCTGCACAG
ATGCTCGCCCACCGCTTCGTCCGCGAGGCGCTTCGACGGCGAGCCGTCCG
CTTACTCCGCCGACAACTCGTGCTCCTCCGACCACCACCACCAGTACTCG
CTGCCGTCGTCGCGCGTCGGCGACCGTCTCGCAAAGTCCAGGGCCACTGG
CCAGAACCACCGCGACAGCGAGCGTGAGCACATCATCTACCTGCTCACCG
CCATCGAAAACGGCCGTCTGGAGAACGCGCTTCTCTTCGTCATGTTCAGC
CACGCGTACAAGCGCGATCGCATGCTGCGCTTCGGCGCCACGCACTCCAT
CGCTGCCTCCGCGCGCGGCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCA
ACGCGCACCACTGGCACGTCGGCTGCGATTCTACCGAGGATAACGTGCAG
CGGCTGCGCCCGCTGCTGTATCCCGTGTCGCCGTCGTGCCAGCTCATGCT
AGGCCAGAGCATGGTGTCGGGCGCCACTGCTTCCGCTCTGTTGGAGCTTC
TCATGCACCGACGCAATATGTGGGGCACCACGCACGCCGTGCGCGCAAGA
GCGTTGGATGCCGACGGTCGTCGTCCTCGCCGTCCGCCGTATCGCGCTGC
TACCACCGCGCACGACGCGGAGGCTGTCGTGCACTTTGCCACGCGCTTGT
ATTGTCGCGAGATGGCTATCGATCGCACCAACAAGTATGCTATATGTGAC
CACGTTCAACAGCGGCTTGGTAACTTGGCAATGGCTGCTTATAACGTCGA
TCACATTGAGGCTACCGTCAATCCTACCTATTCATTGAGTCAATTTGTTT
ATGAGGACCATTACGACGTGTTGCCTCCATCTCCTACCACGCCGGATACG
GCCGAGTTTGGCTCGCCGCTGAAGATTCGCCGCGTGGAGGGCGCGAAGCG
ATGCACCAGGTGCGGCGTGCTCAAGTTTGCTGGTAGTGGACACGGACGTT
CCAAATGTGCTGATGGCTTCAGCATTTCCTCTCACGTTCCGTATCGCCCT
CCTCCAACGTTTGCTCAGTATTGA
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protein sequence of Ggra9496.t1

>Ggra9496.t1 ID=Ggra9496.t1|Name=Ggra9496.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=358bp
MRVPPFYIKKPSSSLHRCSPTASSARRFDGEPSAYSADNSCSSDHHHQYS
LPSSRVGDRLAKSRATGQNHRDSEREHIIYLLTAIENGRLENALLFVMFS
HAYKRDRMLRFGATHSIAASARGAAAAAAAAAANAHHWHVGCDSTEDNVQ
RLRPLLYPVSPSCQLMLGQSMVSGATASALLELLMHRRNMWGTTHAVRAR
ALDADGRRPRRPPYRAATTAHDAEAVVHFATRLYCREMAIDRTNKYAICD
HVQQRLGNLAMAAYNVDHIEATVNPTYSLSQFVYEDHYDVLPPSPTTPDT
AEFGSPLKIRRVEGAKRCTRCGVLKFAGSGHGRSKCADGFSISSHVPYRP
PPTFAQY*
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mRNA from alignment at tig00000873_pilon:285109..286182-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9496.t1 ID=Ggra9496.t1|Name=Ggra9496.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1074bp|location=Sequence derived from alignment at tig00000873_pilon:285109..286182- (Gracilaria gracilis GNS1m male)
ATGCGCGTGCCGCCCTTCTACATCAAGAAGCCGTCCTCTTCGCTGCACAG
ATGCTCGCCCACCGCTTCGTCCGCGAGGCGCTTCGACGGCGAGCCGTCCG
CTTACTCCGCCGACAACTCGTGCTCCTCCGACCACCACCACCAGTACTCG
CTGCCGTCGTCGCGCGTCGGCGACCGTCTCGCAAAGTCCAGGGCCACTGG
CCAGAACCACCGCGACAGCGAGCGTGAGCACATCATCTACCTGCTCACCG
CCATCGAAAACGGCCGTCTGGAGAACGCGCTTCTCTTCGTCATGTTCAGC
CACGCGTACAAGCGCGATCGCATGCTGCGCTTCGGCGCCACGCACTCCAT
CGCTGCCTCCGCGCGCGGCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCA
ACGCGCACCACTGGCACGTCGGCTGCGATTCTACCGAGGATAACGTGCAG
CGGCTGCGCCCGCTGCTGTATCCCGTGTCGCCGTCGTGCCAGCTCATGCT
AGGCCAGAGCATGGTGTCGGGCGCCACTGCTTCCGCTCTGTTGGAGCTTC
TCATGCACCGACGCAATATGTGGGGCACCACGCACGCCGTGCGCGCAAGA
GCGTTGGATGCCGACGGTCGTCGTCCTCGCCGTCCGCCGTATCGCGCTGC
TACCACCGCGCACGACGCGGAGGCTGTCGTGCACTTTGCCACGCGCTTGT
ATTGTCGCGAGATGGCTATCGATCGCACCAACAAGTATGCTATATGTGAC
CACGTTCAACAGCGGCTTGGTAACTTGGCAATGGCTGCTTATAACGTCGA
TCACATTGAGGCTACCGTCAATCCTACCTATTCATTGAGTCAATTTGTTT
ATGAGGACCATTACGACGTGTTGCCTCCATCTCCTACCACGCCGGATACG
GCCGAGTTTGGCTCGCCGCTGAAGATTCGCCGCGTGGAGGGCGCGAAGCG
ATGCACCAGGTGCGGCGTGCTCAAGTTTGCTGGTAGTGGACACGGACGTT
CCAAATGTGCTGATGGCTTCAGCATTTCCTCTCACGTTCCGTATCGCCCT
CCTCCAACGTTTGCTCAGTATTGA
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Coding sequence (CDS) from alignment at tig00000873_pilon:285109..286182-

>Ggra9496.t1 ID=Ggra9496.t1|Name=Ggra9496.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1074bp|location=Sequence derived from alignment at tig00000873_pilon:285109..286182- (Gracilaria gracilis GNS1m male)
ATGCGCGTGCCGCCCTTCTACATCAAGAAGCCGTCCTCTTCGCTGCACAG
ATGCTCGCCCACCGCTTCGTCCGCGAGGCGCTTCGACGGCGAGCCGTCCG
CTTACTCCGCCGACAACTCGTGCTCCTCCGACCACCACCACCAGTACTCG
CTGCCGTCGTCGCGCGTCGGCGACCGTCTCGCAAAGTCCAGGGCCACTGG
CCAGAACCACCGCGACAGCGAGCGTGAGCACATCATCTACCTGCTCACCG
CCATCGAAAACGGCCGTCTGGAGAACGCGCTTCTCTTCGTCATGTTCAGC
CACGCGTACAAGCGCGATCGCATGCTGCGCTTCGGCGCCACGCACTCCAT
CGCTGCCTCCGCGCGCGGCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCA
ACGCGCACCACTGGCACGTCGGCTGCGATTCTACCGAGGATAACGTGCAG
CGGCTGCGCCCGCTGCTGTATCCCGTGTCGCCGTCGTGCCAGCTCATGCT
AGGCCAGAGCATGGTGTCGGGCGCCACTGCTTCCGCTCTGTTGGAGCTTC
TCATGCACCGACGCAATATGTGGGGCACCACGCACGCCGTGCGCGCAAGA
GCGTTGGATGCCGACGGTCGTCGTCCTCGCCGTCCGCCGTATCGCGCTGC
TACCACCGCGCACGACGCGGAGGCTGTCGTGCACTTTGCCACGCGCTTGT
ATTGTCGCGAGATGGCTATCGATCGCACCAACAAGTATGCTATATGTGAC
CACGTTCAACAGCGGCTTGGTAACTTGGCAATGGCTGCTTATAACGTCGA
TCACATTGAGGCTACCGTCAATCCTACCTATTCATTGAGTCAATTTGTTT
ATGAGGACCATTACGACGTGTTGCCTCCATCTCCTACCACGCCGGATACG
GCCGAGTTTGGCTCGCCGCTGAAGATTCGCCGCGTGGAGGGCGCGAAGCG
ATGCACCAGGTGCGGCGTGCTCAAGTTTGCTGGTAGTGGACACGGACGTT
CCAAATGTGCTGATGGCTTCAGCATTTCCTCTCACGTTCCGTATCGCCCT
CCTCCAACGTTTGCTCAGTATTGA
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