Ggra9495.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9495.t1
Unique Name	Ggra9495.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	553

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000873_pilon	contig	tig00000873_pilon:281755..283413 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9495	Ggra9495	Gracilaria gracilis GNS1m male	gene	tig00000873_pilon 281755..283413 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9495.t1.stop1	Ggra9495.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000873_pilon 281755..281757 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9495.t1.CDS1	Ggra9495.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000873_pilon 281755..283413 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9495.t1.exon1	Ggra9495.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000873_pilon 281755..283413 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9495.t1.start1	Ggra9495.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000873_pilon 283411..283413 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9495.t1	Ggra9495.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000873_pilon 281755..283413 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000873_pilon:281755..283413-
coding sequence from alignment at tig00000873_pilon:281755..283413-

mRNA sequence

>Ggra9495.t1 ID=Ggra9495.t1|Name=Ggra9495.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=553bp
MATYKASFPKQLSVFERESHPATAFQGEALQSAEEKYDNKSRDSRRETEA
GIERVPPLAGMNEMVSETWETLMAHRDGSHPTTMGQVFCSVSGSSGKGTL
VNVVKEVFKREMMNIIGKVLESRFDRNGAVGRSEEHQSEINSLNRRLREM
TAKAVKAEEMLKLERKEKYYMQFDCEDLEAKNKRLSTILHQTKAEKENLL
AELVSVADENQHLKSENERLRNAKNESEVEALRAQQEAEMVHLVASQASL
QTLQLEKQLKESHRSANMITQQVEELQRVQYEIGTLFTSALEESQNGIGT
QIDSLVKKSSKALQVLGAKLNRRSPGAEADDEDRAQEEGDGPRAGETNGL
SENAQGTQQQIWVNRDGSPAESGRGIDENQHGILRKLTRRFKRNEAHGGE
HGSAEARESRPGVLSRLRNIAYRASRRNFDVRNANGEQSTSPGRFRRIVS
LGLSRLRQKRHQENETLANTAASSFDALLCDALRGVVECRQKEVNRLRGE
LQAATVQADTFEQRLRKEQHQRLFVKNKLVRVEAELALRKSAVDEDLSGR
TC*

spliced messenger RNA

>Ggra9495.t1 ID=Ggra9495.t1|Name=Ggra9495.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1659bp|location=Sequence derived from alignment at tig00000873_pilon:281755..283413- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTACCTATAAGGCTTCTTTTCCCAAACAGTTGTCCGTCTTCGAACG
TGAGTCTCACCCCGCAACTGCGTTTCAAGGTGAAGCTTTGCAATCTGCAG
AGGAGAAATACGACAACAAAAGCAGAGATAGTCGTCGTGAAACTGAAGCT
GGAATCGAGCGGGTACCGCCGCTGGCAGGCATGAATGAAATGGTGTCAGA
AACATGGGAAACCCTGATGGCTCACCGAGATGGAAGTCACCCAACCACCA
TGGGGCAAGTCTTCTGTTCTGTTAGTGGAAGCTCGGGTAAAGGTACCTTA
GTCAATGTCGTGAAGGAAGTGTTCAAGCGTGAAATGATGAACATTATTGG
CAAGGTCCTTGAGTCTCGCTTTGACAGGAATGGTGCCGTGGGCAGGTCAG
AAGAGCACCAGTCCGAAATAAACTCCTTGAACCGTCGCCTCCGTGAAATG
ACTGCCAAGGCTGTGAAGGCGGAGGAGATGCTGAAGTTAGAAAGGAAGGA
AAAATACTATATGCAGTTTGATTGTGAGGATTTGGAAGCAAAGAACAAGA
GGCTGTCGACGATTCTGCATCAAACAAAGGCAGAAAAAGAGAACCTTCTT
GCGGAACTTGTCTCAGTAGCCGATGAGAACCAGCATTTGAAGTCTGAAAA
CGAGCGCCTTCGAAATGCAAAGAATGAGAGTGAGGTCGAAGCGCTCCGGG
CTCAACAAGAGGCTGAAATGGTCCACCTCGTTGCAAGCCAGGCCTCGCTG
CAGACTCTACAGCTTGAGAAACAACTCAAAGAATCTCATCGCTCGGCAAA
TATGATCACCCAGCAGGTGGAAGAGTTGCAGCGGGTTCAGTATGAAATAG
GGACCCTTTTCACAAGCGCTTTGGAAGAAAGCCAAAACGGAATAGGCACC
CAGATCGACTCGCTCGTGAAGAAGAGCTCGAAAGCCTTGCAGGTTCTTGG
TGCGAAATTAAACCGTCGTAGCCCCGGTGCTGAAGCAGATGATGAAGACA
GGGCTCAAGAAGAGGGGGATGGACCGAGGGCCGGAGAAACAAATGGCCTT
TCCGAAAATGCCCAGGGCACCCAACAACAAATATGGGTCAATCGAGATGG
TAGCCCTGCAGAGAGCGGTCGAGGCATAGACGAAAATCAACATGGAATCT
TGCGAAAACTGACTAGGCGATTCAAACGAAACGAAGCTCATGGTGGCGAG
CATGGGTCTGCTGAAGCGCGGGAATCGCGACCGGGGGTGTTAAGTCGACT
GCGGAATATAGCATACAGGGCTTCTCGTCGCAATTTCGACGTCCGAAACG
CAAATGGCGAACAGTCTACTAGCCCTGGAAGGTTCAGGCGGATCGTTTCA
CTAGGGCTGAGTCGTCTACGTCAAAAGCGTCATCAGGAAAACGAAACTTT
GGCAAACACAGCAGCGAGTTCTTTTGACGCGCTGCTGTGCGATGCATTGC
GGGGTGTGGTGGAATGCCGACAGAAGGAGGTCAACAGGCTTCGTGGAGAG
CTGCAGGCTGCGACAGTGCAAGCAGACACGTTCGAGCAGCGGCTTCGAAA
GGAGCAGCATCAGCGACTGTTTGTGAAGAACAAGTTGGTGAGAGTGGAGG
CAGAACTGGCGTTAAGAAAGAGCGCTGTTGACGAAGACTTGAGTGGGCGG
ACATGTTGA

protein sequence of Ggra9495.t1

>Ggra9495.t1 ID=Ggra9495.t1|Name=Ggra9495.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=553bp
MATYKASFPKQLSVFERESHPATAFQGEALQSAEEKYDNKSRDSRRETEA
GIERVPPLAGMNEMVSETWETLMAHRDGSHPTTMGQVFCSVSGSSGKGTL
VNVVKEVFKREMMNIIGKVLESRFDRNGAVGRSEEHQSEINSLNRRLREM
TAKAVKAEEMLKLERKEKYYMQFDCEDLEAKNKRLSTILHQTKAEKENLL
AELVSVADENQHLKSENERLRNAKNESEVEALRAQQEAEMVHLVASQASL
QTLQLEKQLKESHRSANMITQQVEELQRVQYEIGTLFTSALEESQNGIGT
QIDSLVKKSSKALQVLGAKLNRRSPGAEADDEDRAQEEGDGPRAGETNGL
SENAQGTQQQIWVNRDGSPAESGRGIDENQHGILRKLTRRFKRNEAHGGE
HGSAEARESRPGVLSRLRNIAYRASRRNFDVRNANGEQSTSPGRFRRIVS
LGLSRLRQKRHQENETLANTAASSFDALLCDALRGVVECRQKEVNRLRGE
LQAATVQADTFEQRLRKEQHQRLFVKNKLVRVEAELALRKSAVDEDLSGR
TC*

mRNA from alignment at tig00000873_pilon:281755..283413-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9495.t1 ID=Ggra9495.t1|Name=Ggra9495.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1659bp|location=Sequence derived from alignment at tig00000873_pilon:281755..283413- (Gracilaria gracilis GNS1m male)
ATGGCTACCTATAAGGCTTCTTTTCCCAAACAGTTGTCCGTCTTCGAACG
TGAGTCTCACCCCGCAACTGCGTTTCAAGGTGAAGCTTTGCAATCTGCAG
AGGAGAAATACGACAACAAAAGCAGAGATAGTCGTCGTGAAACTGAAGCT
GGAATCGAGCGGGTACCGCCGCTGGCAGGCATGAATGAAATGGTGTCAGA
AACATGGGAAACCCTGATGGCTCACCGAGATGGAAGTCACCCAACCACCA
TGGGGCAAGTCTTCTGTTCTGTTAGTGGAAGCTCGGGTAAAGGTACCTTA
GTCAATGTCGTGAAGGAAGTGTTCAAGCGTGAAATGATGAACATTATTGG
CAAGGTCCTTGAGTCTCGCTTTGACAGGAATGGTGCCGTGGGCAGGTCAG
AAGAGCACCAGTCCGAAATAAACTCCTTGAACCGTCGCCTCCGTGAAATG
ACTGCCAAGGCTGTGAAGGCGGAGGAGATGCTGAAGTTAGAAAGGAAGGA
AAAATACTATATGCAGTTTGATTGTGAGGATTTGGAAGCAAAGAACAAGA
GGCTGTCGACGATTCTGCATCAAACAAAGGCAGAAAAAGAGAACCTTCTT
GCGGAACTTGTCTCAGTAGCCGATGAGAACCAGCATTTGAAGTCTGAAAA
CGAGCGCCTTCGAAATGCAAAGAATGAGAGTGAGGTCGAAGCGCTCCGGG
CTCAACAAGAGGCTGAAATGGTCCACCTCGTTGCAAGCCAGGCCTCGCTG
CAGACTCTACAGCTTGAGAAACAACTCAAAGAATCTCATCGCTCGGCAAA
TATGATCACCCAGCAGGTGGAAGAGTTGCAGCGGGTTCAGTATGAAATAG
GGACCCTTTTCACAAGCGCTTTGGAAGAAAGCCAAAACGGAATAGGCACC
CAGATCGACTCGCTCGTGAAGAAGAGCTCGAAAGCCTTGCAGGTTCTTGG
TGCGAAATTAAACCGTCGTAGCCCCGGTGCTGAAGCAGATGATGAAGACA
GGGCTCAAGAAGAGGGGGATGGACCGAGGGCCGGAGAAACAAATGGCCTT
TCCGAAAATGCCCAGGGCACCCAACAACAAATATGGGTCAATCGAGATGG
TAGCCCTGCAGAGAGCGGTCGAGGCATAGACGAAAATCAACATGGAATCT
TGCGAAAACTGACTAGGCGATTCAAACGAAACGAAGCTCATGGTGGCGAG
CATGGGTCTGCTGAAGCGCGGGAATCGCGACCGGGGGTGTTAAGTCGACT
GCGGAATATAGCATACAGGGCTTCTCGTCGCAATTTCGACGTCCGAAACG
CAAATGGCGAACAGTCTACTAGCCCTGGAAGGTTCAGGCGGATCGTTTCA
CTAGGGCTGAGTCGTCTACGTCAAAAGCGTCATCAGGAAAACGAAACTTT
GGCAAACACAGCAGCGAGTTCTTTTGACGCGCTGCTGTGCGATGCATTGC
GGGGTGTGGTGGAATGCCGACAGAAGGAGGTCAACAGGCTTCGTGGAGAG
CTGCAGGCTGCGACAGTGCAAGCAGACACGTTCGAGCAGCGGCTTCGAAA
GGAGCAGCATCAGCGACTGTTTGTGAAGAACAAGTTGGTGAGAGTGGAGG
CAGAACTGGCGTTAAGAAAGAGCGCTGTTGACGAAGACTTGAGTGGGCGG
ACATGTTGA

Coding sequence (CDS) from alignment at tig00000873_pilon:281755..283413-

>Ggra9495.t1 ID=Ggra9495.t1|Name=Ggra9495.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1659bp|location=Sequence derived from alignment at tig00000873_pilon:281755..283413- (Gracilaria gracilis GNS1m male)
ATGGCTACCTATAAGGCTTCTTTTCCCAAACAGTTGTCCGTCTTCGAACG
TGAGTCTCACCCCGCAACTGCGTTTCAAGGTGAAGCTTTGCAATCTGCAG
AGGAGAAATACGACAACAAAAGCAGAGATAGTCGTCGTGAAACTGAAGCT
GGAATCGAGCGGGTACCGCCGCTGGCAGGCATGAATGAAATGGTGTCAGA
AACATGGGAAACCCTGATGGCTCACCGAGATGGAAGTCACCCAACCACCA
TGGGGCAAGTCTTCTGTTCTGTTAGTGGAAGCTCGGGTAAAGGTACCTTA
GTCAATGTCGTGAAGGAAGTGTTCAAGCGTGAAATGATGAACATTATTGG
CAAGGTCCTTGAGTCTCGCTTTGACAGGAATGGTGCCGTGGGCAGGTCAG
AAGAGCACCAGTCCGAAATAAACTCCTTGAACCGTCGCCTCCGTGAAATG
ACTGCCAAGGCTGTGAAGGCGGAGGAGATGCTGAAGTTAGAAAGGAAGGA
AAAATACTATATGCAGTTTGATTGTGAGGATTTGGAAGCAAAGAACAAGA
GGCTGTCGACGATTCTGCATCAAACAAAGGCAGAAAAAGAGAACCTTCTT
GCGGAACTTGTCTCAGTAGCCGATGAGAACCAGCATTTGAAGTCTGAAAA
CGAGCGCCTTCGAAATGCAAAGAATGAGAGTGAGGTCGAAGCGCTCCGGG
CTCAACAAGAGGCTGAAATGGTCCACCTCGTTGCAAGCCAGGCCTCGCTG
CAGACTCTACAGCTTGAGAAACAACTCAAAGAATCTCATCGCTCGGCAAA
TATGATCACCCAGCAGGTGGAAGAGTTGCAGCGGGTTCAGTATGAAATAG
GGACCCTTTTCACAAGCGCTTTGGAAGAAAGCCAAAACGGAATAGGCACC
CAGATCGACTCGCTCGTGAAGAAGAGCTCGAAAGCCTTGCAGGTTCTTGG
TGCGAAATTAAACCGTCGTAGCCCCGGTGCTGAAGCAGATGATGAAGACA
GGGCTCAAGAAGAGGGGGATGGACCGAGGGCCGGAGAAACAAATGGCCTT
TCCGAAAATGCCCAGGGCACCCAACAACAAATATGGGTCAATCGAGATGG
TAGCCCTGCAGAGAGCGGTCGAGGCATAGACGAAAATCAACATGGAATCT
TGCGAAAACTGACTAGGCGATTCAAACGAAACGAAGCTCATGGTGGCGAG
CATGGGTCTGCTGAAGCGCGGGAATCGCGACCGGGGGTGTTAAGTCGACT
GCGGAATATAGCATACAGGGCTTCTCGTCGCAATTTCGACGTCCGAAACG
CAAATGGCGAACAGTCTACTAGCCCTGGAAGGTTCAGGCGGATCGTTTCA
CTAGGGCTGAGTCGTCTACGTCAAAAGCGTCATCAGGAAAACGAAACTTT
GGCAAACACAGCAGCGAGTTCTTTTGACGCGCTGCTGTGCGATGCATTGC
GGGGTGTGGTGGAATGCCGACAGAAGGAGGTCAACAGGCTTCGTGGAGAG
CTGCAGGCTGCGACAGTGCAAGCAGACACGTTCGAGCAGCGGCTTCGAAA
GGAGCAGCATCAGCGACTGTTTGTGAAGAACAAGTTGGTGAGAGTGGAGG
CAGAACTGGCGTTAAGAAAGAGCGCTGTTGACGAAGACTTGAGTGGGCGG
ACATGTTGA