Ggra9494.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9494.t1
Unique Name	Ggra9494.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	261

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000873_pilon	contig	tig00000873_pilon:279719..280501 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	391625.PPSIR1_08302
PFAMs	SnoaL_2
Max annot lvl	1224\|Proteobacteria
Evalue	9.83e-115
EggNOG OGs	COG4922@1\|root,COG4922@2\|Bacteria,1R51I@1224\|Proteobacteria
Description	Protein conserved in bacteria
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9494	Ggra9494	Gracilaria gracilis GNS1m male	gene	tig00000873_pilon 279719..280501 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9494.t1.start1	Ggra9494.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000873_pilon 279719..279721 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9494.t1.CDS1	Ggra9494.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000873_pilon 279719..280501 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9494.t1.exon1	Ggra9494.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000873_pilon 279719..280501 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9494.t1.stop1	Ggra9494.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000873_pilon 280499..280501 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9494.t1	Ggra9494.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000873_pilon 279719..280501 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000873_pilon:279719..280501+
coding sequence from alignment at tig00000873_pilon:279719..280501+

mRNA sequence

>Ggra9494.t1 ID=Ggra9494.t1|Name=Ggra9494.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=261bp
MSNSASKADAKLNNAKSLYLEGIRDGKARYAVEKYTGDRYTQHSTGVRDG
VEGFVQFFESFLKRNPHRDIQIIRGWQDGNHVFVHAYQDINNGESKWVTS
DFFDTDDNDKIIEHWDIIEAYTPSPPSGHTVLDGSTEIVDLDKTKSNKQI
IRDIITHILVSGGDPQRVDEFIAQPNARVPDGLASFRARATSPDRKLLYQ
EIVLCVGQGNFVSTLCKATLDDKPYAQCDIFRLENGKVVEHWDNAEPIGP
KSEWVNSGKF*

spliced messenger RNA

>Ggra9494.t1 ID=Ggra9494.t1|Name=Ggra9494.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=783bp|location=Sequence derived from alignment at tig00000873_pilon:279719..280501+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAACTCTGCATCCAAAGCAGATGCCAAATTGAACAACGCCAAATC
GTTGTATCTCGAAGGAATCCGCGATGGCAAGGCGCGATACGCTGTTGAGA
AATACACCGGTGATCGCTACACACAGCATTCAACCGGCGTTCGCGACGGA
GTGGAGGGCTTTGTACAGTTTTTCGAGTCATTCCTCAAGCGCAATCCGCA
TCGCGATATCCAGATCATTCGAGGATGGCAAGATGGAAACCATGTCTTCG
TCCACGCTTACCAAGATATCAACAACGGCGAGTCAAAGTGGGTCACTTCC
GATTTCTTCGACACTGACGACAATGACAAAATCATAGAACATTGGGACAT
CATCGAGGCGTACACACCCTCCCCACCGTCTGGGCACACTGTGCTCGATG
GATCCACTGAGATTGTTGACCTTGACAAGACCAAATCGAACAAGCAGATC
ATTCGTGATATTATCACTCACATCCTCGTCAGTGGTGGTGATCCGCAACG
TGTCGACGAATTCATTGCTCAGCCAAACGCACGAGTACCTGATGGCCTTG
CTTCTTTCCGTGCGCGCGCTACCAGCCCTGACAGGAAACTGCTCTACCAA
GAAATCGTGCTGTGCGTGGGACAAGGAAACTTTGTGTCTACATTGTGCAA
GGCTACGCTCGATGATAAGCCGTACGCGCAGTGTGATATTTTCAGGCTTG
AGAATGGCAAAGTCGTCGAACACTGGGATAACGCAGAGCCTATCGGCCCC
AAATCTGAATGGGTCAACTCCGGCAAGTTTTAG

protein sequence of Ggra9494.t1

>Ggra9494.t1 ID=Ggra9494.t1|Name=Ggra9494.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=261bp
MSNSASKADAKLNNAKSLYLEGIRDGKARYAVEKYTGDRYTQHSTGVRDG
VEGFVQFFESFLKRNPHRDIQIIRGWQDGNHVFVHAYQDINNGESKWVTS
DFFDTDDNDKIIEHWDIIEAYTPSPPSGHTVLDGSTEIVDLDKTKSNKQI
IRDIITHILVSGGDPQRVDEFIAQPNARVPDGLASFRARATSPDRKLLYQ
EIVLCVGQGNFVSTLCKATLDDKPYAQCDIFRLENGKVVEHWDNAEPIGP
KSEWVNSGKF*

mRNA from alignment at tig00000873_pilon:279719..280501+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9494.t1 ID=Ggra9494.t1|Name=Ggra9494.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=783bp|location=Sequence derived from alignment at tig00000873_pilon:279719..280501+ (Gracilaria gracilis GNS1m male)
ATGAGCAACTCTGCATCCAAAGCAGATGCCAAATTGAACAACGCCAAATC
GTTGTATCTCGAAGGAATCCGCGATGGCAAGGCGCGATACGCTGTTGAGA
AATACACCGGTGATCGCTACACACAGCATTCAACCGGCGTTCGCGACGGA
GTGGAGGGCTTTGTACAGTTTTTCGAGTCATTCCTCAAGCGCAATCCGCA
TCGCGATATCCAGATCATTCGAGGATGGCAAGATGGAAACCATGTCTTCG
TCCACGCTTACCAAGATATCAACAACGGCGAGTCAAAGTGGGTCACTTCC
GATTTCTTCGACACTGACGACAATGACAAAATCATAGAACATTGGGACAT
CATCGAGGCGTACACACCCTCCCCACCGTCTGGGCACACTGTGCTCGATG
GATCCACTGAGATTGTTGACCTTGACAAGACCAAATCGAACAAGCAGATC
ATTCGTGATATTATCACTCACATCCTCGTCAGTGGTGGTGATCCGCAACG
TGTCGACGAATTCATTGCTCAGCCAAACGCACGAGTACCTGATGGCCTTG
CTTCTTTCCGTGCGCGCGCTACCAGCCCTGACAGGAAACTGCTCTACCAA
GAAATCGTGCTGTGCGTGGGACAAGGAAACTTTGTGTCTACATTGTGCAA
GGCTACGCTCGATGATAAGCCGTACGCGCAGTGTGATATTTTCAGGCTTG
AGAATGGCAAAGTCGTCGAACACTGGGATAACGCAGAGCCTATCGGCCCC
AAATCTGAATGGGTCAACTCCGGCAAGTTTTAG

Coding sequence (CDS) from alignment at tig00000873_pilon:279719..280501+

>Ggra9494.t1 ID=Ggra9494.t1|Name=Ggra9494.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=783bp|location=Sequence derived from alignment at tig00000873_pilon:279719..280501+ (Gracilaria gracilis GNS1m male)
ATGAGCAACTCTGCATCCAAAGCAGATGCCAAATTGAACAACGCCAAATC
GTTGTATCTCGAAGGAATCCGCGATGGCAAGGCGCGATACGCTGTTGAGA
AATACACCGGTGATCGCTACACACAGCATTCAACCGGCGTTCGCGACGGA
GTGGAGGGCTTTGTACAGTTTTTCGAGTCATTCCTCAAGCGCAATCCGCA
TCGCGATATCCAGATCATTCGAGGATGGCAAGATGGAAACCATGTCTTCG
TCCACGCTTACCAAGATATCAACAACGGCGAGTCAAAGTGGGTCACTTCC
GATTTCTTCGACACTGACGACAATGACAAAATCATAGAACATTGGGACAT
CATCGAGGCGTACACACCCTCCCCACCGTCTGGGCACACTGTGCTCGATG
GATCCACTGAGATTGTTGACCTTGACAAGACCAAATCGAACAAGCAGATC
ATTCGTGATATTATCACTCACATCCTCGTCAGTGGTGGTGATCCGCAACG
TGTCGACGAATTCATTGCTCAGCCAAACGCACGAGTACCTGATGGCCTTG
CTTCTTTCCGTGCGCGCGCTACCAGCCCTGACAGGAAACTGCTCTACCAA
GAAATCGTGCTGTGCGTGGGACAAGGAAACTTTGTGTCTACATTGTGCAA
GGCTACGCTCGATGATAAGCCGTACGCGCAGTGTGATATTTTCAGGCTTG
AGAATGGCAAAGTCGTCGAACACTGGGATAACGCAGAGCCTATCGGCCCC
AAATCTGAATGGGTCAACTCCGGCAAGTTTTAG