Ggra9483.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9483.t1
Unique NameGgra9483.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length203
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:81315..81923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9483Ggra9483Gracilaria gracilis GNS1m malegenetig00000873_pilon 81315..81923 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9483.t1.start1Ggra9483.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000873_pilon 81315..81317 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9483.t1.CDS1Ggra9483.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000873_pilon 81315..81923 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9483.t1.exon1Ggra9483.t1.exon1Gracilaria gracilis GNS1m maleexontig00000873_pilon 81315..81923 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9483.t1.stop1Ggra9483.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000873_pilon 81921..81923 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9483.t1Ggra9483.t1Gracilaria gracilis GNS1m malepolypeptidetig00000873_pilon 81315..81923 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9483.t1 ID=Ggra9483.t1|Name=Ggra9483.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=203bp
LTHGHSITRYTSHDVARGTTAAPARFAIKRLPFCEPLLPLPLHAASNAQS
PPPPSLHVAVERVRSRAASPSRELPSREPPSRRVCRVRRVRRVPAPPPLP
SLTPTLSSPPPPPAPQPPTPVGPLTLLALSSGALGRSVCATLRNFQRRAA
ALQLPLSEGDACQDDVQDGADAYPEIGPTYVPAPASAVARAPVPCYAVVQ
RA*
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spliced messenger RNA

>Ggra9483.t1 ID=Ggra9483.t1|Name=Ggra9483.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=609bp|location=Sequence derived from alignment at tig00000873_pilon:81315..81923+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
TTGACACATGGACACAGCATTACCCGCTACACGAGTCATGATGTCGCACG
CGGCACGACGGCGGCGCCCGCGCGCTTCGCTATAAAGCGCTTGCCCTTCT
GCGAGCCACTTCTGCCGCTGCCGCTGCACGCGGCGTCCAACGCACAGTCG
CCGCCACCACCGTCGCTGCATGTGGCGGTCGAGCGAGTGCGCTCGCGCGC
TGCCAGCCCGTCGCGCGAGTTGCCTTCGCGCGAGCCGCCGTCGCGCCGCG
TGTGTCGCGTGCGCCGCGTGCGTCGGGTGCCCGCGCCCCCGCCGTTGCCG
TCGTTAACGCCGACGCTGAGTTCACCACCGCCGCCGCCGGCACCGCAGCC
GCCCACGCCGGTGGGGCCCCTGACATTGCTGGCGCTTTCCTCCGGCGCAC
TGGGGCGCAGCGTATGCGCCACGCTACGCAACTTTCAGCGCCGCGCGGCC
GCGCTGCAGCTGCCACTCAGCGAGGGCGACGCGTGCCAAGATGACGTGCA
AGACGGCGCCGACGCGTACCCGGAAATTGGCCCCACGTACGTGCCTGCGC
CAGCCAGCGCGGTGGCGCGAGCACCCGTCCCATGCTACGCCGTGGTGCAG
CGCGCATAG
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protein sequence of Ggra9483.t1

>Ggra9483.t1 ID=Ggra9483.t1|Name=Ggra9483.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=203bp
LTHGHSITRYTSHDVARGTTAAPARFAIKRLPFCEPLLPLPLHAASNAQS
PPPPSLHVAVERVRSRAASPSRELPSREPPSRRVCRVRRVRRVPAPPPLP
SLTPTLSSPPPPPAPQPPTPVGPLTLLALSSGALGRSVCATLRNFQRRAA
ALQLPLSEGDACQDDVQDGADAYPEIGPTYVPAPASAVARAPVPCYAVVQ
RA*
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mRNA from alignment at tig00000873_pilon:81315..81923+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9483.t1 ID=Ggra9483.t1|Name=Ggra9483.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=609bp|location=Sequence derived from alignment at tig00000873_pilon:81315..81923+ (Gracilaria gracilis GNS1m male)
TTGACACATGGACACAGCATTACCCGCTACACGAGTCATGATGTCGCACG
CGGCACGACGGCGGCGCCCGCGCGCTTCGCTATAAAGCGCTTGCCCTTCT
GCGAGCCACTTCTGCCGCTGCCGCTGCACGCGGCGTCCAACGCACAGTCG
CCGCCACCACCGTCGCTGCATGTGGCGGTCGAGCGAGTGCGCTCGCGCGC
TGCCAGCCCGTCGCGCGAGTTGCCTTCGCGCGAGCCGCCGTCGCGCCGCG
TGTGTCGCGTGCGCCGCGTGCGTCGGGTGCCCGCGCCCCCGCCGTTGCCG
TCGTTAACGCCGACGCTGAGTTCACCACCGCCGCCGCCGGCACCGCAGCC
GCCCACGCCGGTGGGGCCCCTGACATTGCTGGCGCTTTCCTCCGGCGCAC
TGGGGCGCAGCGTATGCGCCACGCTACGCAACTTTCAGCGCCGCGCGGCC
GCGCTGCAGCTGCCACTCAGCGAGGGCGACGCGTGCCAAGATGACGTGCA
AGACGGCGCCGACGCGTACCCGGAAATTGGCCCCACGTACGTGCCTGCGC
CAGCCAGCGCGGTGGCGCGAGCACCCGTCCCATGCTACGCCGTGGTGCAG
CGCGCATAG
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Coding sequence (CDS) from alignment at tig00000873_pilon:81315..81923+

>Ggra9483.t1 ID=Ggra9483.t1|Name=Ggra9483.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=609bp|location=Sequence derived from alignment at tig00000873_pilon:81315..81923+ (Gracilaria gracilis GNS1m male)
TTGACACATGGACACAGCATTACCCGCTACACGAGTCATGATGTCGCACG
CGGCACGACGGCGGCGCCCGCGCGCTTCGCTATAAAGCGCTTGCCCTTCT
GCGAGCCACTTCTGCCGCTGCCGCTGCACGCGGCGTCCAACGCACAGTCG
CCGCCACCACCGTCGCTGCATGTGGCGGTCGAGCGAGTGCGCTCGCGCGC
TGCCAGCCCGTCGCGCGAGTTGCCTTCGCGCGAGCCGCCGTCGCGCCGCG
TGTGTCGCGTGCGCCGCGTGCGTCGGGTGCCCGCGCCCCCGCCGTTGCCG
TCGTTAACGCCGACGCTGAGTTCACCACCGCCGCCGCCGGCACCGCAGCC
GCCCACGCCGGTGGGGCCCCTGACATTGCTGGCGCTTTCCTCCGGCGCAC
TGGGGCGCAGCGTATGCGCCACGCTACGCAACTTTCAGCGCCGCGCGGCC
GCGCTGCAGCTGCCACTCAGCGAGGGCGACGCGTGCCAAGATGACGTGCA
AGACGGCGCCGACGCGTACCCGGAAATTGGCCCCACGTACGTGCCTGCGC
CAGCCAGCGCGGTGGCGCGAGCACCCGTCCCATGCTACGCCGTGGTGCAG
CGCGCATAG
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