Ggra9482.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9482.t1
Unique NameGgra9482.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length287
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:77987..78847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9482Ggra9482Gracilaria gracilis GNS1m malegenetig00000873_pilon 77987..78847 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9482.t1.stop1Ggra9482.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000873_pilon 77987..77989 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9482.t1.CDS1Ggra9482.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000873_pilon 77987..78847 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9482.t1.exon1Ggra9482.t1.exon1Gracilaria gracilis GNS1m maleexontig00000873_pilon 77987..78847 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9482.t1.start1Ggra9482.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000873_pilon 78845..78847 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9482.t1Ggra9482.t1Gracilaria gracilis GNS1m malepolypeptidetig00000873_pilon 77987..78847 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9482.t1 ID=Ggra9482.t1|Name=Ggra9482.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=287bp
MRRSLGTNAVEQPGFSKRSRPENHPTSSSQGTVSTESIYENSWEQDLRKE
YEGHGRNAVAQKESCIPRSSTPDISDLGGLDDHQFSSIPVYASSKASPSH
LERDQSGHFSRCPVSYRYVGTSAARRARTNSVPDLHINQTQSAYDPNALN
DVLEDPSHIQSVELLDLRNLSSPLGAVLTHESKSDAQPQIDIHIPMHPME
NPTQLEAINLHPVATNLSLRENNHFLSAIGTTDSLPSTQEHFVVHGFQGD
AKEKEIRRLIDVLNIIENGGLSKNQSRSLLRNAVVQ*
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spliced messenger RNA

>Ggra9482.t1 ID=Ggra9482.t1|Name=Ggra9482.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=861bp|location=Sequence derived from alignment at tig00000873_pilon:77987..78847- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAAGAAGCCTCGGTACGAATGCGGTGGAGCAACCAGGATTTTCAAA
AAGGAGTCGACCTGAAAACCACCCCACGTCTTCTTCACAGGGCACAGTAT
CTACAGAGTCTATTTACGAGAATTCATGGGAGCAGGACTTGAGAAAAGAG
TATGAAGGACATGGAAGAAACGCCGTAGCACAGAAAGAAAGCTGTATTCC
TCGTTCGAGCACCCCTGATATCAGCGATTTAGGCGGTCTGGATGATCATC
AATTTTCCTCCATACCAGTATATGCTTCTTCGAAGGCCTCCCCTTCACAT
CTTGAGCGAGATCAATCTGGTCATTTCTCACGATGCCCAGTTTCTTATCG
ATATGTCGGAACCTCTGCTGCTCGTCGTGCTCGAACGAACAGTGTACCAG
ATTTGCACATCAATCAAACTCAAAGTGCATATGATCCAAATGCATTGAAC
GATGTACTTGAAGATCCATCACATATTCAATCTGTGGAGCTACTGGACCT
ACGTAATCTATCATCTCCACTAGGAGCTGTACTTACACACGAAAGCAAGA
GTGATGCACAGCCTCAGATCGACATTCATATTCCGATGCATCCTATGGAG
AACCCCACACAACTTGAGGCAATCAACCTACATCCTGTTGCCACGAACCT
ATCTTTGAGGGAAAATAACCACTTTCTTTCTGCAATAGGAACGACTGACA
GTTTACCCTCAACACAGGAGCACTTTGTTGTGCATGGCTTCCAAGGTGAT
GCAAAGGAGAAAGAAATACGAAGACTCATAGACGTATTGAACATCATTGA
GAATGGAGGACTGTCCAAGAACCAATCTCGTTCTCTCCTCCGAAATGCGG
TTGTGCAATGA
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protein sequence of Ggra9482.t1

>Ggra9482.t1 ID=Ggra9482.t1|Name=Ggra9482.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=287bp
MRRSLGTNAVEQPGFSKRSRPENHPTSSSQGTVSTESIYENSWEQDLRKE
YEGHGRNAVAQKESCIPRSSTPDISDLGGLDDHQFSSIPVYASSKASPSH
LERDQSGHFSRCPVSYRYVGTSAARRARTNSVPDLHINQTQSAYDPNALN
DVLEDPSHIQSVELLDLRNLSSPLGAVLTHESKSDAQPQIDIHIPMHPME
NPTQLEAINLHPVATNLSLRENNHFLSAIGTTDSLPSTQEHFVVHGFQGD
AKEKEIRRLIDVLNIIENGGLSKNQSRSLLRNAVVQ*
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mRNA from alignment at tig00000873_pilon:77987..78847-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9482.t1 ID=Ggra9482.t1|Name=Ggra9482.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=861bp|location=Sequence derived from alignment at tig00000873_pilon:77987..78847- (Gracilaria gracilis GNS1m male)
ATGCGAAGAAGCCTCGGTACGAATGCGGTGGAGCAACCAGGATTTTCAAA
AAGGAGTCGACCTGAAAACCACCCCACGTCTTCTTCACAGGGCACAGTAT
CTACAGAGTCTATTTACGAGAATTCATGGGAGCAGGACTTGAGAAAAGAG
TATGAAGGACATGGAAGAAACGCCGTAGCACAGAAAGAAAGCTGTATTCC
TCGTTCGAGCACCCCTGATATCAGCGATTTAGGCGGTCTGGATGATCATC
AATTTTCCTCCATACCAGTATATGCTTCTTCGAAGGCCTCCCCTTCACAT
CTTGAGCGAGATCAATCTGGTCATTTCTCACGATGCCCAGTTTCTTATCG
ATATGTCGGAACCTCTGCTGCTCGTCGTGCTCGAACGAACAGTGTACCAG
ATTTGCACATCAATCAAACTCAAAGTGCATATGATCCAAATGCATTGAAC
GATGTACTTGAAGATCCATCACATATTCAATCTGTGGAGCTACTGGACCT
ACGTAATCTATCATCTCCACTAGGAGCTGTACTTACACACGAAAGCAAGA
GTGATGCACAGCCTCAGATCGACATTCATATTCCGATGCATCCTATGGAG
AACCCCACACAACTTGAGGCAATCAACCTACATCCTGTTGCCACGAACCT
ATCTTTGAGGGAAAATAACCACTTTCTTTCTGCAATAGGAACGACTGACA
GTTTACCCTCAACACAGGAGCACTTTGTTGTGCATGGCTTCCAAGGTGAT
GCAAAGGAGAAAGAAATACGAAGACTCATAGACGTATTGAACATCATTGA
GAATGGAGGACTGTCCAAGAACCAATCTCGTTCTCTCCTCCGAAATGCGG
TTGTGCAATGA
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Coding sequence (CDS) from alignment at tig00000873_pilon:77987..78847-

>Ggra9482.t1 ID=Ggra9482.t1|Name=Ggra9482.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=861bp|location=Sequence derived from alignment at tig00000873_pilon:77987..78847- (Gracilaria gracilis GNS1m male)
ATGCGAAGAAGCCTCGGTACGAATGCGGTGGAGCAACCAGGATTTTCAAA
AAGGAGTCGACCTGAAAACCACCCCACGTCTTCTTCACAGGGCACAGTAT
CTACAGAGTCTATTTACGAGAATTCATGGGAGCAGGACTTGAGAAAAGAG
TATGAAGGACATGGAAGAAACGCCGTAGCACAGAAAGAAAGCTGTATTCC
TCGTTCGAGCACCCCTGATATCAGCGATTTAGGCGGTCTGGATGATCATC
AATTTTCCTCCATACCAGTATATGCTTCTTCGAAGGCCTCCCCTTCACAT
CTTGAGCGAGATCAATCTGGTCATTTCTCACGATGCCCAGTTTCTTATCG
ATATGTCGGAACCTCTGCTGCTCGTCGTGCTCGAACGAACAGTGTACCAG
ATTTGCACATCAATCAAACTCAAAGTGCATATGATCCAAATGCATTGAAC
GATGTACTTGAAGATCCATCACATATTCAATCTGTGGAGCTACTGGACCT
ACGTAATCTATCATCTCCACTAGGAGCTGTACTTACACACGAAAGCAAGA
GTGATGCACAGCCTCAGATCGACATTCATATTCCGATGCATCCTATGGAG
AACCCCACACAACTTGAGGCAATCAACCTACATCCTGTTGCCACGAACCT
ATCTTTGAGGGAAAATAACCACTTTCTTTCTGCAATAGGAACGACTGACA
GTTTACCCTCAACACAGGAGCACTTTGTTGTGCATGGCTTCCAAGGTGAT
GCAAAGGAGAAAGAAATACGAAGACTCATAGACGTATTGAACATCATTGA
GAATGGAGGACTGTCCAAGAACCAATCTCGTTCTCTCCTCCGAAATGCGG
TTGTGCAATGA
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