Ggra948.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra948.t1
Unique Name	Ggra948.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	558

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000049_pilon	contig	tig00000049_pilon:907881..909554 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra948	Ggra948	Gracilaria gracilis GNS1m male	gene	tig00000049_pilon 907881..909554 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra948.t1.start1	Ggra948.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000049_pilon 907881..907883 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra948.t1.CDS1	Ggra948.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000049_pilon 907881..909554 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra948.t1.exon1	Ggra948.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000049_pilon 907881..909554 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra948.t1.stop1	Ggra948.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000049_pilon 909552..909554 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra948.t1	Ggra948.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000049_pilon 907881..909554 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000049_pilon:907881..909554+
coding sequence from alignment at tig00000049_pilon:907881..909554+

mRNA sequence

>Ggra948.t1 ID=Ggra948.t1|Name=Ggra948.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=558bp
MSSRLSLHDCTISIRIPTPPTPLPDSPEQIALQSLSSKRDQTEAYIGETI
FLLLTLAPKEATASSESLRRTIDTCDDPYVYIGSLPHAASNEKPSCRLPV
MRETAWLPSKQDGSPVVCKGLWVLVRSPPQTSELSRALAMAGRQNIVLSL
REMTVPNMRNSSVWATIDRASRLFGKTVALYATRHILLSMPIEITCQCLT
VSGSLDKALVSVTARNSTSDAFIAVVPPYINVSSSRVVQEGADVNSHGRS
AALDGQYEFVLMTDEESDDDSTLSSMQAEQDLLLSKQASDSSCEDYGLFI
PSFNHLIRHAARLGPREVYNFVYRIVEKGAAESSQSDPQDRDNKLLRPTP
KPPRLTMNQCIQTSVAVAWNCSPEQEENLVVYANETVSRQMSAGGVLAAG
KRSTVAVHITSINWRPSALLKSIVVSFSGPERVVVGSRINVSISVLNQTD
RHLHNAKVKVQQDGERYELLALRTVVVVGDIMAGCETSLQVPCIALNSGT
LSFGKVCVVDERGLVWTSESVFRTVVESEEVPRLGVDDKTTETASSIPAS
ATVSVGD*

spliced messenger RNA

>Ggra948.t1 ID=Ggra948.t1|Name=Ggra948.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1674bp|location=Sequence derived from alignment at tig00000049_pilon:907881..909554+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCCCGCCTGTCGCTGCACGACTGCACCATCTCCATCCGCATCCC
CACGCCGCCGACGCCGCTGCCAGACTCGCCTGAGCAGATCGCGCTGCAGT
CGCTGTCCTCCAAGCGCGACCAAACCGAGGCGTACATCGGCGAGACCATC
TTCCTGCTGCTAACACTCGCGCCCAAGGAAGCCACCGCGTCCTCCGAGTC
GCTCCGCCGCACCATCGACACATGTGATGACCCGTACGTCTACATCGGCt
cgctgccgcatgccgctagcaacgaaaagccgtcgtgccgcctgcccgtc
atgcgcgagacggcgtggttgccgtccaaacaggatggCTCGCCCGTCGT
GTGCAAGGGCCTTTGGGTGCTTGTTCGCTCGCCGCCGCAGACGTCCGAAC
TCTCGCGCGCGCTAGCGATGGCTGGGCGGCAGAATATCGTGCTGTCGTTG
CGCGAGATGACCGTGCCGAATATGCGAAACTCCAGCGTGTGGGCTACGAT
CGATCGCGCCAGCAGGCTGTTTGGCAAGACGGTGGCGTTGTATGCCACCA
GACATATCTTACTGTCCATGCCTATTGAGATTACCTGCCAGTGTCTCACC
GTGTCTGGCAGTCTTGACAAGGCGTTGGTCAGCGTCACCGCGCGCAACTC
TACCAGTGACGCGTTCATTGCCGTTGTGCCGCCGTACATTAATGTGTCGT
CGTCTCGCGTTGTGCAGGAGGGCGCCGATGTCAACTCGCATGGACGGTCA
GCCGCGCTAGACGGCCAGTACGAATTCGTGCTGATGACCGACGAAGAGAG
CGATGATGACAGCACGTTGTCCAGCATGCAAGCAGAGCAGGATCTACTAC
TTTCAAAGCAAGCAAGTGATTCGAGTTGCGAGGACTACGGGTTGTTTATA
CCCTCGTTCAATCATCTCATTCGCCACGCTGCCCGTCTCGGTCCGCGCGA
GGTGTACAACTTTGTGTACCGAATCGTCGAGAAGGGCGCTGCGGAGAGTT
CGCAATCAGACCCGCAAGATCGGGACAACAAGCTCTTGCGACCGACACCA
AAACCGCCGCGACTAACAATGAATCAGTGTATACAGACCAGCGTTGCGGT
TGCATGGAATTGCTCGCCAGAGCAGGAGGAGAATCTTGTCGTGTATGCAA
ATGAGACCGTCTCAAGACAAATGTCGGCAGGTGGCGTTCTGGCTGCTGGG
AAGCGAAGCACCGTTGCGGTGCATATCACCAGCATTAACTGGCGGCCGTC
GGCGCTCCTCAAGTCGATCGTGGTATCTTTCAGTGGCCCCGAAAGGGTGG
TCGTGGGCAGTCGGATAAACGTGTCTATCAGCGTTTTGAACCAGACGGAT
CGTCACTTGCACAATGCGAAAGTGAAGGTGCAACAAGATGGAGAGAGGTA
CGAGCTGCTGGCGCTGCGGACTGTTGTGGTTGTGGGCGATATCATGGCCG
GCTGTGAGACCAGTCTGCAGGTGCCCTGTATTGCGTTGAACTCGGGCACG
TTGAGCTTTGGAAAGGTGTGCGTTGTGGACGAGCGCGGGCTGGTGTGGAC
ATCAGAGAGCGTGTTTCGCACTGTAGTCGAGAGCGAGGAGGTTCCGAGAT
TGGGGGTGGACGACAAGACGACGGAAACGGCAAGCAGTATACCGGCAAGT
GCAACCGTTTCAGTCGGGGACTGA

protein sequence of Ggra948.t1

>Ggra948.t1 ID=Ggra948.t1|Name=Ggra948.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=558bp
MSSRLSLHDCTISIRIPTPPTPLPDSPEQIALQSLSSKRDQTEAYIGETI
FLLLTLAPKEATASSESLRRTIDTCDDPYVYIGSLPHAASNEKPSCRLPV
MRETAWLPSKQDGSPVVCKGLWVLVRSPPQTSELSRALAMAGRQNIVLSL
REMTVPNMRNSSVWATIDRASRLFGKTVALYATRHILLSMPIEITCQCLT
VSGSLDKALVSVTARNSTSDAFIAVVPPYINVSSSRVVQEGADVNSHGRS
AALDGQYEFVLMTDEESDDDSTLSSMQAEQDLLLSKQASDSSCEDYGLFI
PSFNHLIRHAARLGPREVYNFVYRIVEKGAAESSQSDPQDRDNKLLRPTP
KPPRLTMNQCIQTSVAVAWNCSPEQEENLVVYANETVSRQMSAGGVLAAG
KRSTVAVHITSINWRPSALLKSIVVSFSGPERVVVGSRINVSISVLNQTD
RHLHNAKVKVQQDGERYELLALRTVVVVGDIMAGCETSLQVPCIALNSGT
LSFGKVCVVDERGLVWTSESVFRTVVESEEVPRLGVDDKTTETASSIPAS
ATVSVGD*

mRNA from alignment at tig00000049_pilon:907881..909554+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra948.t1 ID=Ggra948.t1|Name=Ggra948.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1674bp|location=Sequence derived from alignment at tig00000049_pilon:907881..909554+ (Gracilaria gracilis GNS1m male)
ATGTCGTCCCGCCTGTCGCTGCACGACTGCACCATCTCCATCCGCATCCC
CACGCCGCCGACGCCGCTGCCAGACTCGCCTGAGCAGATCGCGCTGCAGT
CGCTGTCCTCCAAGCGCGACCAAACCGAGGCGTACATCGGCGAGACCATC
TTCCTGCTGCTAACACTCGCGCCCAAGGAAGCCACCGCGTCCTCCGAGTC
GCTCCGCCGCACCATCGACACATGTGATGACCCGTACGTCTACATCGGCt
cgctgccgcatgccgctagcaacgaaaagccgtcgtgccgcctgcccgtc
atgcgcgagacggcgtggttgccgtccaaacaggatggCTCGCCCGTCGT
GTGCAAGGGCCTTTGGGTGCTTGTTCGCTCGCCGCCGCAGACGTCCGAAC
TCTCGCGCGCGCTAGCGATGGCTGGGCGGCAGAATATCGTGCTGTCGTTG
CGCGAGATGACCGTGCCGAATATGCGAAACTCCAGCGTGTGGGCTACGAT
CGATCGCGCCAGCAGGCTGTTTGGCAAGACGGTGGCGTTGTATGCCACCA
GACATATCTTACTGTCCATGCCTATTGAGATTACCTGCCAGTGTCTCACC
GTGTCTGGCAGTCTTGACAAGGCGTTGGTCAGCGTCACCGCGCGCAACTC
TACCAGTGACGCGTTCATTGCCGTTGTGCCGCCGTACATTAATGTGTCGT
CGTCTCGCGTTGTGCAGGAGGGCGCCGATGTCAACTCGCATGGACGGTCA
GCCGCGCTAGACGGCCAGTACGAATTCGTGCTGATGACCGACGAAGAGAG
CGATGATGACAGCACGTTGTCCAGCATGCAAGCAGAGCAGGATCTACTAC
TTTCAAAGCAAGCAAGTGATTCGAGTTGCGAGGACTACGGGTTGTTTATA
CCCTCGTTCAATCATCTCATTCGCCACGCTGCCCGTCTCGGTCCGCGCGA
GGTGTACAACTTTGTGTACCGAATCGTCGAGAAGGGCGCTGCGGAGAGTT
CGCAATCAGACCCGCAAGATCGGGACAACAAGCTCTTGCGACCGACACCA
AAACCGCCGCGACTAACAATGAATCAGTGTATACAGACCAGCGTTGCGGT
TGCATGGAATTGCTCGCCAGAGCAGGAGGAGAATCTTGTCGTGTATGCAA
ATGAGACCGTCTCAAGACAAATGTCGGCAGGTGGCGTTCTGGCTGCTGGG
AAGCGAAGCACCGTTGCGGTGCATATCACCAGCATTAACTGGCGGCCGTC
GGCGCTCCTCAAGTCGATCGTGGTATCTTTCAGTGGCCCCGAAAGGGTGG
TCGTGGGCAGTCGGATAAACGTGTCTATCAGCGTTTTGAACCAGACGGAT
CGTCACTTGCACAATGCGAAAGTGAAGGTGCAACAAGATGGAGAGAGGTA
CGAGCTGCTGGCGCTGCGGACTGTTGTGGTTGTGGGCGATATCATGGCCG
GCTGTGAGACCAGTCTGCAGGTGCCCTGTATTGCGTTGAACTCGGGCACG
TTGAGCTTTGGAAAGGTGTGCGTTGTGGACGAGCGCGGGCTGGTGTGGAC
ATCAGAGAGCGTGTTTCGCACTGTAGTCGAGAGCGAGGAGGTTCCGAGAT
TGGGGGTGGACGACAAGACGACGGAAACGGCAAGCAGTATACCGGCAAGT
GCAACCGTTTCAGTCGGGGACTGA

Coding sequence (CDS) from alignment at tig00000049_pilon:907881..909554+

>Ggra948.t1 ID=Ggra948.t1|Name=Ggra948.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1674bp|location=Sequence derived from alignment at tig00000049_pilon:907881..909554+ (Gracilaria gracilis GNS1m male)
ATGTCGTCCCGCCTGTCGCTGCACGACTGCACCATCTCCATCCGCATCCC
CACGCCGCCGACGCCGCTGCCAGACTCGCCTGAGCAGATCGCGCTGCAGT
CGCTGTCCTCCAAGCGCGACCAAACCGAGGCGTACATCGGCGAGACCATC
TTCCTGCTGCTAACACTCGCGCCCAAGGAAGCCACCGCGTCCTCCGAGTC
GCTCCGCCGCACCATCGACACATGTGATGACCCGTACGTCTACATCGGCt
cgctgccgcatgccgctagcaacgaaaagccgtcgtgccgcctgcccgtc
atgcgcgagacggcgtggttgccgtccaaacaggatggCTCGCCCGTCGT
GTGCAAGGGCCTTTGGGTGCTTGTTCGCTCGCCGCCGCAGACGTCCGAAC
TCTCGCGCGCGCTAGCGATGGCTGGGCGGCAGAATATCGTGCTGTCGTTG
CGCGAGATGACCGTGCCGAATATGCGAAACTCCAGCGTGTGGGCTACGAT
CGATCGCGCCAGCAGGCTGTTTGGCAAGACGGTGGCGTTGTATGCCACCA
GACATATCTTACTGTCCATGCCTATTGAGATTACCTGCCAGTGTCTCACC
GTGTCTGGCAGTCTTGACAAGGCGTTGGTCAGCGTCACCGCGCGCAACTC
TACCAGTGACGCGTTCATTGCCGTTGTGCCGCCGTACATTAATGTGTCGT
CGTCTCGCGTTGTGCAGGAGGGCGCCGATGTCAACTCGCATGGACGGTCA
GCCGCGCTAGACGGCCAGTACGAATTCGTGCTGATGACCGACGAAGAGAG
CGATGATGACAGCACGTTGTCCAGCATGCAAGCAGAGCAGGATCTACTAC
TTTCAAAGCAAGCAAGTGATTCGAGTTGCGAGGACTACGGGTTGTTTATA
CCCTCGTTCAATCATCTCATTCGCCACGCTGCCCGTCTCGGTCCGCGCGA
GGTGTACAACTTTGTGTACCGAATCGTCGAGAAGGGCGCTGCGGAGAGTT
CGCAATCAGACCCGCAAGATCGGGACAACAAGCTCTTGCGACCGACACCA
AAACCGCCGCGACTAACAATGAATCAGTGTATACAGACCAGCGTTGCGGT
TGCATGGAATTGCTCGCCAGAGCAGGAGGAGAATCTTGTCGTGTATGCAA
ATGAGACCGTCTCAAGACAAATGTCGGCAGGTGGCGTTCTGGCTGCTGGG
AAGCGAAGCACCGTTGCGGTGCATATCACCAGCATTAACTGGCGGCCGTC
GGCGCTCCTCAAGTCGATCGTGGTATCTTTCAGTGGCCCCGAAAGGGTGG
TCGTGGGCAGTCGGATAAACGTGTCTATCAGCGTTTTGAACCAGACGGAT
CGTCACTTGCACAATGCGAAAGTGAAGGTGCAACAAGATGGAGAGAGGTA
CGAGCTGCTGGCGCTGCGGACTGTTGTGGTTGTGGGCGATATCATGGCCG
GCTGTGAGACCAGTCTGCAGGTGCCCTGTATTGCGTTGAACTCGGGCACG
TTGAGCTTTGGAAAGGTGTGCGTTGTGGACGAGCGCGGGCTGGTGTGGAC
ATCAGAGAGCGTGTTTCGCACTGTAGTCGAGAGCGAGGAGGTTCCGAGAT
TGGGGGTGGACGACAAGACGACGGAAACGGCAAGCAGTATACCGGCAAGT
GCAACCGTTTCAGTCGGGGACTGA