Ggra9394.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9394.t1
Unique NameGgra9394.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length295
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:300859..301743 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMQ252CT
Preferred nameNIT2
PFAMsCN_hydrolase
Max annot lvl2759|Eukaryota
KEGG rclassRC00010,RC00021,RC00053,RC00315,RC00325,RC00617,RC00959,RC02811
KEGG koko:K00797,ko:K01501,ko:K13101,ko:K13566
KEGG ReactionR00269,R00348,R00540,R01887,R01920,R02869,R03093,R03542,R05591,R07855,R08359
KEGG Pathwayko00250,ko00270,ko00330,ko00380,ko00410,ko00460,ko00480,ko00627,ko00643,ko00910,ko01100,ko01120,map00250,map00270,map00330,map00380,map00410,map00460,map00480,map00627,map00643,map00910,map01100,map01120
KEGG ModuleM00034,M00133
GOsGO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006082,GO:0006107,GO:0006108,GO:0006520,GO:0006528,GO:0006541,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0008152,GO:0008270,GO:0009064,GO:0009066,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009636,GO:0009987,GO:0012505,GO:0015630,GO:0016192,GO:0016787,GO:0016810,GO:0016811,GO:0019752,GO:0030141,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032787,GO:0032940,GO:0034641,GO:0034774,GO:0035580,GO:0036230,GO:0042119,GO:0042221,GO:0042581,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0043436,GO:0043603,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044430,GO:0044433,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046872,GO:0046903,GO:0046914,GO:0050152,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0060205,GO:0070013,GO:0070820,GO:0070887,GO:0071704,GO:0097237,GO:0097708,GO:0098754,GO:0099503,GO:1901564,GO:1901605,GO:1904724,GO:1990748
Evalue2.76e-106
EggNOG OGsCOG0388@1|root,KOG0806@2759|Eukaryota
EC2.5.1.16,3.5.1.3,3.5.5.1
Descriptionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
COG categoryDU
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9394Ggra9394Gracilaria gracilis GNS1m malegenetig00000883_pilon 300859..301743 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9394.t1.stop1Ggra9394.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 300859..300861 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9394.t1.CDS1Ggra9394.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 300859..301743 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9394.t1.exon1Ggra9394.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 300859..301743 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9394.t1.start1Ggra9394.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 301741..301743 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9394.t1Ggra9394.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 300859..301743 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9394.t1 ID=Ggra9394.t1|Name=Ggra9394.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=295bp
MAAHSPTFKLALCQMLVTDDKAANLEKARNFLRRAKEADAKIAVLPECFQ
CPYDTACFRAYSEPLPDPPFPVTSKHESPSLTMLQDIAQETGMYIVGGSV
PELSEDKVYNTSMTVSPNGELIAKHRKAHLFDIDVPGGIKFKESDALSAG
EKATAFEVPELSFTAGVAICYDMRFPELAMVQARHMKASLLIYPGAFNMT
TGPAHWELLIRSRALDNQVFVAACSPARATSGGGYKAWGNSMVVDPWGKI
VACTEEKEALVIAEIDLARIEKVRKAIPTRKQRRTDLYTLEYLK*
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spliced messenger RNA

>Ggra9394.t1 ID=Ggra9394.t1|Name=Ggra9394.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00000883_pilon:300859..301743- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCCCATTCGCCAACTTTTAAGCTTGCTCTTTGCCAGATGTTAGT
CACTGACGATAAAGCAGCCAACCTCGAGAAAGCAAGGAATTTTCTTCGGC
GAGCCAAGGAAGCCGACGCAAAGATTGCTGTTCTACCAGAGTGCTTTCAG
TGTCCATACGACACTGCTTGCTTCCGTGCGTACTCTGAACCTCTTCCGGA
CCCTCCGTTTCCGGTGACGAGCAAGCATGAGTCGCCCTCGCTCACAATGC
TTCAGGATATTGCACAAGAAACGGGAATGTACATCGTGGGCGGATCTGTC
CCTGAGTTATCTGAAGATAAGGTTTACAACACTAGTATGACGGTATCGCC
AAACGGGGAGCTCATCGCTAAGCATCGAAAAGCTCATCTATTCGATATTG
ATGTTCCAGGTGGGATAAAATTCAAAGAGAGTGATGCCCTCAGTGCTGGA
GAGAAAGCCACGGCTTTCGAAGTTCCAGAACTGTCGTTTACGGCTGGAGT
GGCCATATGCTACGACATGAGATTTCCTGAATTGGCTATGGTCCAAGCAC
GTCACATGAAAGCCAGCTTGCTAATCTATCCTGGTGCGTTCAACATGACG
ACCGGACCAGCACATTGGGAGCTGCTCATCCGATCACGTGCATTGGATAA
CCAGGTGTTTGTAGCTGCATGCTCACCTGCTCGAGCGACGAGCGGGGGTG
GATATAAGGCATGGGGAAATTCTATGGTCGTTGATCCGTGGGGAAAGATT
GTTGCATGTACGGAAGAAAAGGAAGCTCTCGTCATCGCTGAGATAGACTT
GGCGAGAATCGAAAAAGTCCGGAAGGCCATTCCTACCAGGAAGCAGAGAA
GAACCGACTTGTACACTCTTGAATACCTTAAATAG
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protein sequence of Ggra9394.t1

>Ggra9394.t1 ID=Ggra9394.t1|Name=Ggra9394.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=295bp
MAAHSPTFKLALCQMLVTDDKAANLEKARNFLRRAKEADAKIAVLPECFQ
CPYDTACFRAYSEPLPDPPFPVTSKHESPSLTMLQDIAQETGMYIVGGSV
PELSEDKVYNTSMTVSPNGELIAKHRKAHLFDIDVPGGIKFKESDALSAG
EKATAFEVPELSFTAGVAICYDMRFPELAMVQARHMKASLLIYPGAFNMT
TGPAHWELLIRSRALDNQVFVAACSPARATSGGGYKAWGNSMVVDPWGKI
VACTEEKEALVIAEIDLARIEKVRKAIPTRKQRRTDLYTLEYLK*
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mRNA from alignment at tig00000883_pilon:300859..301743-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9394.t1 ID=Ggra9394.t1|Name=Ggra9394.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00000883_pilon:300859..301743- (Gracilaria gracilis GNS1m male)
ATGGCTGCCCATTCGCCAACTTTTAAGCTTGCTCTTTGCCAGATGTTAGT
CACTGACGATAAAGCAGCCAACCTCGAGAAAGCAAGGAATTTTCTTCGGC
GAGCCAAGGAAGCCGACGCAAAGATTGCTGTTCTACCAGAGTGCTTTCAG
TGTCCATACGACACTGCTTGCTTCCGTGCGTACTCTGAACCTCTTCCGGA
CCCTCCGTTTCCGGTGACGAGCAAGCATGAGTCGCCCTCGCTCACAATGC
TTCAGGATATTGCACAAGAAACGGGAATGTACATCGTGGGCGGATCTGTC
CCTGAGTTATCTGAAGATAAGGTTTACAACACTAGTATGACGGTATCGCC
AAACGGGGAGCTCATCGCTAAGCATCGAAAAGCTCATCTATTCGATATTG
ATGTTCCAGGTGGGATAAAATTCAAAGAGAGTGATGCCCTCAGTGCTGGA
GAGAAAGCCACGGCTTTCGAAGTTCCAGAACTGTCGTTTACGGCTGGAGT
GGCCATATGCTACGACATGAGATTTCCTGAATTGGCTATGGTCCAAGCAC
GTCACATGAAAGCCAGCTTGCTAATCTATCCTGGTGCGTTCAACATGACG
ACCGGACCAGCACATTGGGAGCTGCTCATCCGATCACGTGCATTGGATAA
CCAGGTGTTTGTAGCTGCATGCTCACCTGCTCGAGCGACGAGCGGGGGTG
GATATAAGGCATGGGGAAATTCTATGGTCGTTGATCCGTGGGGAAAGATT
GTTGCATGTACGGAAGAAAAGGAAGCTCTCGTCATCGCTGAGATAGACTT
GGCGAGAATCGAAAAAGTCCGGAAGGCCATTCCTACCAGGAAGCAGAGAA
GAACCGACTTGTACACTCTTGAATACCTTAAATAG
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Coding sequence (CDS) from alignment at tig00000883_pilon:300859..301743-

>Ggra9394.t1 ID=Ggra9394.t1|Name=Ggra9394.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=885bp|location=Sequence derived from alignment at tig00000883_pilon:300859..301743- (Gracilaria gracilis GNS1m male)
ATGGCTGCCCATTCGCCAACTTTTAAGCTTGCTCTTTGCCAGATGTTAGT
CACTGACGATAAAGCAGCCAACCTCGAGAAAGCAAGGAATTTTCTTCGGC
GAGCCAAGGAAGCCGACGCAAAGATTGCTGTTCTACCAGAGTGCTTTCAG
TGTCCATACGACACTGCTTGCTTCCGTGCGTACTCTGAACCTCTTCCGGA
CCCTCCGTTTCCGGTGACGAGCAAGCATGAGTCGCCCTCGCTCACAATGC
TTCAGGATATTGCACAAGAAACGGGAATGTACATCGTGGGCGGATCTGTC
CCTGAGTTATCTGAAGATAAGGTTTACAACACTAGTATGACGGTATCGCC
AAACGGGGAGCTCATCGCTAAGCATCGAAAAGCTCATCTATTCGATATTG
ATGTTCCAGGTGGGATAAAATTCAAAGAGAGTGATGCCCTCAGTGCTGGA
GAGAAAGCCACGGCTTTCGAAGTTCCAGAACTGTCGTTTACGGCTGGAGT
GGCCATATGCTACGACATGAGATTTCCTGAATTGGCTATGGTCCAAGCAC
GTCACATGAAAGCCAGCTTGCTAATCTATCCTGGTGCGTTCAACATGACG
ACCGGACCAGCACATTGGGAGCTGCTCATCCGATCACGTGCATTGGATAA
CCAGGTGTTTGTAGCTGCATGCTCACCTGCTCGAGCGACGAGCGGGGGTG
GATATAAGGCATGGGGAAATTCTATGGTCGTTGATCCGTGGGGAAAGATT
GTTGCATGTACGGAAGAAAAGGAAGCTCTCGTCATCGCTGAGATAGACTT
GGCGAGAATCGAAAAAGTCCGGAAGGCCATTCCTACCAGGAAGCAGAGAA
GAACCGACTTGTACACTCTTGAATACCTTAAATAG
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