Ggra9363.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9363.t1
Unique Name	Ggra9363.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	741

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000883_pilon	contig	tig00000883_pilon:99425..101647 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708327.1
PFAMs	Lactamase_B,Lactamase_B_2
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K00784
KEGG Pathway	ko03013,map03013
GOs	GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0005515,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0031123,GO:0034414,GO:0034470,GO:0034641,GO:0034660,GO:0042779,GO:0042780,GO:0042781,GO:0042802,GO:0043170,GO:0043628,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1905267
Evalue	3.91e-68
EggNOG OGs	COG1234@1\|root,KOG2121@2759\|Eukaryota
EC	3.1.26.11
Description	3'-tRNA processing endoribonuclease activity
COG category	C
BRITE	ko00000,ko00001,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9363	Ggra9363	Gracilaria gracilis GNS1m male	gene	tig00000883_pilon 99425..101647 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9363.t1.start1	Ggra9363.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000883_pilon 99425..99427 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9363.t1.CDS1	Ggra9363.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000883_pilon 99425..101647 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9363.t1.exon1	Ggra9363.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000883_pilon 99425..101647 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9363.t1.stop1	Ggra9363.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000883_pilon 101645..101647 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9363.t1	Ggra9363.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000883_pilon 99425..101647 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000883_pilon:99425..101647+
coding sequence from alignment at tig00000883_pilon:99425..101647+

mRNA sequence

>Ggra9363.t1 ID=Ggra9363.t1|Name=Ggra9363.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=741bp
MVGQTNSTDSLNSESGGSRRRKKTSGHEKKRNSKRGALDEDPVAEMTRYD
PPSPYIDLGAPPSEAKGFYAWSEEDEEYYRHFRELDLTYQAPDDVTVEDL
APVPRPMGRDGKPAMYDAAVRYDEDSGEWVPTTEEEEELLRTSSPIIDPY
FIPEAGESECPTSLGINISSEGVPEEDSDEGISFSNGDPELEHPQPSTAS
EHRRRPLKLPPGGWRVVHLGTSSAVPTRKRNVSSTAFIVEPKKSPKDESE
PSMFLVDVGENTDWQLRDCNWCMTHGFRWIRAIFITHLHGDHIYGLPMLL
HDIGKYAQFRRRLALESGDVDSEPIIQIYGPYGIRGFVRSSLYWTNPLGV
RFSVSELVPRENDFAHLRGWDDVPEGGKIYVAECGSSDVQEGSGVDLRRE
CAPPHPEEVRAEDVHASEDGLWHVWKQEDEEMQLEVVAAPLRHRLPCFGY
VFRESITKDLSSEEERGNDDIRDETRVAEQNGTSKHEMDRNGVDVVQEQH
ANPKFEIDMKRARELGVYGSQFKVLRSGRSVTMSKTGIVVRPEDVAISSE
GNELRQVQGGAEDSSKPQLKEDSDKKTFARSATILGDTCDSSAIADAARN
TDLLVHEATFTHSLRTKARMSMHSTARMTGEFGKTINAKKIALTHFSSRY
EGLVMNQNEEEDGDFDEFDDGDEDLASANSLVAEARQGYGDGNVIIVAAE
DFMEHDIPPVDGMDGDGVALGEDGNRVNEFVKEEGVLRKC*

spliced messenger RNA

>Ggra9363.t1 ID=Ggra9363.t1|Name=Ggra9363.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2223bp|location=Sequence derived from alignment at tig00000883_pilon:99425..101647+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGGACAAACAAACTCTACAGACAGTTTAAATTCTGAGAGCGGTGG
TTCCAGAAGGCGGAAAAAGACATCCGGCCATGAGAAGAAGCGAAATTCGA
AAAGAGGCGCGCTCGACGAAGACCCTGTCGCTGAAATGACCAGATACGAC
CCCCCCAGTCCATATATTGACTTAGGTGCCCCACCATCGGAAGCGAAGGG
TTTCTATGCATGGTCCGAAGAAGACGAAGAATACTATCGCCACTTCCGAG
AGCTGGACTTGACCTACCAAGCACCCGATGATGTGACAGTAGAGGATCTT
GCGCCCGTCCCACGGCCGATGGGTCGAGACGGAAAACCGGCCATGTATGA
TGCTGCTGTGCGTTATGATGAAGATAGCGGGGAATGGGTCCCTACAACTG
AGGAAGAAGAAGAATTGTTGCGGACTTCATCTCCTATCATTGATCCATAT
TTCATCCCTGAGGCCGGTGAATCTGAATGTCCCACTTCGCTGGGAATCAA
TATTTCAAGCGAAGGTGTACCTGAAGAAGATTCAGATGAAGGCATCTCCT
TCTCAAACGGCGATCCGGAGCTCGAACATCCCCAACCATCCACTGCTTCA
GAACATCGACGACGACCGCTAAAACTTCCTCCGGGAGGTTGGCGGGTAGT
GCACTTAGGCACATCTTCTGCGGTTCCTACCCGAAAGCGGAATGTCTCAT
CGACTGCGTTTATAGTTGAGCCAAAGAAGTCGCCCAAAGACGAGAGCGAA
CCATCGATGTTTCTTGTCGACGTGGGGGAAAACACTGACTGGCAGCTTAG
AGATTGTAACTGGTGCATGACCCATGGGTTTCGCTGGATTCGAGCCATTT
TTATCACACATCTTCACGGGGACCACATATATGGTTTGCCGATGCTATTG
CATGACATAGGGAAATATGCACAGTTCCGCCGTCGGCTTGCCTTAGAAAG
TGGAGATGTTGACTCTGAGCCAATCATACAAATATATGGTCCATATGGAA
TTCGCGGGTTCGTAAGATCTAGCTTATACTGGACGAATCCACTTGGAGTG
CGATTCTCGGTCTCTGAACTAGTTCCACGCGAGAACGATTTTGCTCATCT
GAGAGGATGGGATGACGTACCAGAAGGGGGAAAGATTTATGTGGCTGAGT
GCGGAAGTTCTGATGTTCAAGAAGGCTCAGGAGTTGACTTGCGAAGAGAA
TGTGCTCCACCTCACCCTGAAGAAGTTCGCGCGGAAGACGTGCATGCGAG
CGAGGATGGATTGTGGCACGTTTGGAAACAAGAAGACGAAGAGATGCAAC
TCGAGGTCGTGGCGGCTCCATTGCGACATCGCTTGCCCTGCTTTGGTTAT
GTTTTCAGAGAATCAATTACTAAGGATCTCAGTTCTGAAGAAGAAAGAGG
TAATGATGACATTAGGGATGAGACCAGGGTAGCGGAGCAGAACGGAACGA
GCAAACATGAGATGGATAGGAACGGTGTAGACGTGGTACAAGAGCAGCAT
GCAAACCCGAAGTTTGAAATCGACATGAAGAGGGCACGCGAACTTGGTGT
GTATGGTTCGCAGTTCAAGGTTTTGAGAAGCGGACGTTCTGTCACAATGT
CGAAGACGGGGATTGTAGTACGTCCCGAAGACGTTGCAATCTCATCAGAA
GGAAATGAATTGAGACAAGTTCAAGGTGGCGCAGAAGACTCGAGCAAGCC
ACAATTGAAAGAGGACTCGGACAAGAAAACATTCGCGAGAAGTGCGACGA
TTCTTGGCGATACCTGTGACTCAAGTGCCATTGCAGATGCGGCCAGGAAC
ACAGATTTGCTGGTTCATGAGGCTACCTTCACGCACAGTTTAAGAACAAA
AGCTCGTATGTCGATGCACAGTACTGCTCGAATGACGGGTGAGTTTGGAA
AGACTATAAACGCGAAGAAGATTGCTCTCACACACTTTTCAAGTAGATAT
GAGGGATTGGTTATGAatcagaatgaagaagaggatggggattttgatga
atttgatgatggagatgaggatCTAGCAAGTGCGAACTCTTTGGTAGCTG
AGGCGAGACAGGGGTACGGGGACGGTAATGTGATTATTGTCGCGGCGGAA
GACTTTATGGAGCATGATATCCCACCAGTTGATGGGATGGACGGTGACGG
AGTGGCACTAGGAGAGGACGGTAATAGAGTAAATGAGTTTGTGAAAGAGG
AGGGGGTCCTAAGGAAGTGCTGA

protein sequence of Ggra9363.t1

>Ggra9363.t1 ID=Ggra9363.t1|Name=Ggra9363.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=741bp
MVGQTNSTDSLNSESGGSRRRKKTSGHEKKRNSKRGALDEDPVAEMTRYD
PPSPYIDLGAPPSEAKGFYAWSEEDEEYYRHFRELDLTYQAPDDVTVEDL
APVPRPMGRDGKPAMYDAAVRYDEDSGEWVPTTEEEEELLRTSSPIIDPY
FIPEAGESECPTSLGINISSEGVPEEDSDEGISFSNGDPELEHPQPSTAS
EHRRRPLKLPPGGWRVVHLGTSSAVPTRKRNVSSTAFIVEPKKSPKDESE
PSMFLVDVGENTDWQLRDCNWCMTHGFRWIRAIFITHLHGDHIYGLPMLL
HDIGKYAQFRRRLALESGDVDSEPIIQIYGPYGIRGFVRSSLYWTNPLGV
RFSVSELVPRENDFAHLRGWDDVPEGGKIYVAECGSSDVQEGSGVDLRRE
CAPPHPEEVRAEDVHASEDGLWHVWKQEDEEMQLEVVAAPLRHRLPCFGY
VFRESITKDLSSEEERGNDDIRDETRVAEQNGTSKHEMDRNGVDVVQEQH
ANPKFEIDMKRARELGVYGSQFKVLRSGRSVTMSKTGIVVRPEDVAISSE
GNELRQVQGGAEDSSKPQLKEDSDKKTFARSATILGDTCDSSAIADAARN
TDLLVHEATFTHSLRTKARMSMHSTARMTGEFGKTINAKKIALTHFSSRY
EGLVMNQNEEEDGDFDEFDDGDEDLASANSLVAEARQGYGDGNVIIVAAE
DFMEHDIPPVDGMDGDGVALGEDGNRVNEFVKEEGVLRKC*

mRNA from alignment at tig00000883_pilon:99425..101647+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9363.t1 ID=Ggra9363.t1|Name=Ggra9363.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2223bp|location=Sequence derived from alignment at tig00000883_pilon:99425..101647+ (Gracilaria gracilis GNS1m male)
ATGGTTGGACAAACAAACTCTACAGACAGTTTAAATTCTGAGAGCGGTGG
TTCCAGAAGGCGGAAAAAGACATCCGGCCATGAGAAGAAGCGAAATTCGA
AAAGAGGCGCGCTCGACGAAGACCCTGTCGCTGAAATGACCAGATACGAC
CCCCCCAGTCCATATATTGACTTAGGTGCCCCACCATCGGAAGCGAAGGG
TTTCTATGCATGGTCCGAAGAAGACGAAGAATACTATCGCCACTTCCGAG
AGCTGGACTTGACCTACCAAGCACCCGATGATGTGACAGTAGAGGATCTT
GCGCCCGTCCCACGGCCGATGGGTCGAGACGGAAAACCGGCCATGTATGA
TGCTGCTGTGCGTTATGATGAAGATAGCGGGGAATGGGTCCCTACAACTG
AGGAAGAAGAAGAATTGTTGCGGACTTCATCTCCTATCATTGATCCATAT
TTCATCCCTGAGGCCGGTGAATCTGAATGTCCCACTTCGCTGGGAATCAA
TATTTCAAGCGAAGGTGTACCTGAAGAAGATTCAGATGAAGGCATCTCCT
TCTCAAACGGCGATCCGGAGCTCGAACATCCCCAACCATCCACTGCTTCA
GAACATCGACGACGACCGCTAAAACTTCCTCCGGGAGGTTGGCGGGTAGT
GCACTTAGGCACATCTTCTGCGGTTCCTACCCGAAAGCGGAATGTCTCAT
CGACTGCGTTTATAGTTGAGCCAAAGAAGTCGCCCAAAGACGAGAGCGAA
CCATCGATGTTTCTTGTCGACGTGGGGGAAAACACTGACTGGCAGCTTAG
AGATTGTAACTGGTGCATGACCCATGGGTTTCGCTGGATTCGAGCCATTT
TTATCACACATCTTCACGGGGACCACATATATGGTTTGCCGATGCTATTG
CATGACATAGGGAAATATGCACAGTTCCGCCGTCGGCTTGCCTTAGAAAG
TGGAGATGTTGACTCTGAGCCAATCATACAAATATATGGTCCATATGGAA
TTCGCGGGTTCGTAAGATCTAGCTTATACTGGACGAATCCACTTGGAGTG
CGATTCTCGGTCTCTGAACTAGTTCCACGCGAGAACGATTTTGCTCATCT
GAGAGGATGGGATGACGTACCAGAAGGGGGAAAGATTTATGTGGCTGAGT
GCGGAAGTTCTGATGTTCAAGAAGGCTCAGGAGTTGACTTGCGAAGAGAA
TGTGCTCCACCTCACCCTGAAGAAGTTCGCGCGGAAGACGTGCATGCGAG
CGAGGATGGATTGTGGCACGTTTGGAAACAAGAAGACGAAGAGATGCAAC
TCGAGGTCGTGGCGGCTCCATTGCGACATCGCTTGCCCTGCTTTGGTTAT
GTTTTCAGAGAATCAATTACTAAGGATCTCAGTTCTGAAGAAGAAAGAGG
TAATGATGACATTAGGGATGAGACCAGGGTAGCGGAGCAGAACGGAACGA
GCAAACATGAGATGGATAGGAACGGTGTAGACGTGGTACAAGAGCAGCAT
GCAAACCCGAAGTTTGAAATCGACATGAAGAGGGCACGCGAACTTGGTGT
GTATGGTTCGCAGTTCAAGGTTTTGAGAAGCGGACGTTCTGTCACAATGT
CGAAGACGGGGATTGTAGTACGTCCCGAAGACGTTGCAATCTCATCAGAA
GGAAATGAATTGAGACAAGTTCAAGGTGGCGCAGAAGACTCGAGCAAGCC
ACAATTGAAAGAGGACTCGGACAAGAAAACATTCGCGAGAAGTGCGACGA
TTCTTGGCGATACCTGTGACTCAAGTGCCATTGCAGATGCGGCCAGGAAC
ACAGATTTGCTGGTTCATGAGGCTACCTTCACGCACAGTTTAAGAACAAA
AGCTCGTATGTCGATGCACAGTACTGCTCGAATGACGGGTGAGTTTGGAA
AGACTATAAACGCGAAGAAGATTGCTCTCACACACTTTTCAAGTAGATAT
GAGGGATTGGTTATGAatcagaatgaagaagaggatggggattttgatga
atttgatgatggagatgaggatCTAGCAAGTGCGAACTCTTTGGTAGCTG
AGGCGAGACAGGGGTACGGGGACGGTAATGTGATTATTGTCGCGGCGGAA
GACTTTATGGAGCATGATATCCCACCAGTTGATGGGATGGACGGTGACGG
AGTGGCACTAGGAGAGGACGGTAATAGAGTAAATGAGTTTGTGAAAGAGG
AGGGGGTCCTAAGGAAGTGCTGA

Coding sequence (CDS) from alignment at tig00000883_pilon:99425..101647+

>Ggra9363.t1 ID=Ggra9363.t1|Name=Ggra9363.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2223bp|location=Sequence derived from alignment at tig00000883_pilon:99425..101647+ (Gracilaria gracilis GNS1m male)
ATGGTTGGACAAACAAACTCTACAGACAGTTTAAATTCTGAGAGCGGTGG
TTCCAGAAGGCGGAAAAAGACATCCGGCCATGAGAAGAAGCGAAATTCGA
AAAGAGGCGCGCTCGACGAAGACCCTGTCGCTGAAATGACCAGATACGAC
CCCCCCAGTCCATATATTGACTTAGGTGCCCCACCATCGGAAGCGAAGGG
TTTCTATGCATGGTCCGAAGAAGACGAAGAATACTATCGCCACTTCCGAG
AGCTGGACTTGACCTACCAAGCACCCGATGATGTGACAGTAGAGGATCTT
GCGCCCGTCCCACGGCCGATGGGTCGAGACGGAAAACCGGCCATGTATGA
TGCTGCTGTGCGTTATGATGAAGATAGCGGGGAATGGGTCCCTACAACTG
AGGAAGAAGAAGAATTGTTGCGGACTTCATCTCCTATCATTGATCCATAT
TTCATCCCTGAGGCCGGTGAATCTGAATGTCCCACTTCGCTGGGAATCAA
TATTTCAAGCGAAGGTGTACCTGAAGAAGATTCAGATGAAGGCATCTCCT
TCTCAAACGGCGATCCGGAGCTCGAACATCCCCAACCATCCACTGCTTCA
GAACATCGACGACGACCGCTAAAACTTCCTCCGGGAGGTTGGCGGGTAGT
GCACTTAGGCACATCTTCTGCGGTTCCTACCCGAAAGCGGAATGTCTCAT
CGACTGCGTTTATAGTTGAGCCAAAGAAGTCGCCCAAAGACGAGAGCGAA
CCATCGATGTTTCTTGTCGACGTGGGGGAAAACACTGACTGGCAGCTTAG
AGATTGTAACTGGTGCATGACCCATGGGTTTCGCTGGATTCGAGCCATTT
TTATCACACATCTTCACGGGGACCACATATATGGTTTGCCGATGCTATTG
CATGACATAGGGAAATATGCACAGTTCCGCCGTCGGCTTGCCTTAGAAAG
TGGAGATGTTGACTCTGAGCCAATCATACAAATATATGGTCCATATGGAA
TTCGCGGGTTCGTAAGATCTAGCTTATACTGGACGAATCCACTTGGAGTG
CGATTCTCGGTCTCTGAACTAGTTCCACGCGAGAACGATTTTGCTCATCT
GAGAGGATGGGATGACGTACCAGAAGGGGGAAAGATTTATGTGGCTGAGT
GCGGAAGTTCTGATGTTCAAGAAGGCTCAGGAGTTGACTTGCGAAGAGAA
TGTGCTCCACCTCACCCTGAAGAAGTTCGCGCGGAAGACGTGCATGCGAG
CGAGGATGGATTGTGGCACGTTTGGAAACAAGAAGACGAAGAGATGCAAC
TCGAGGTCGTGGCGGCTCCATTGCGACATCGCTTGCCCTGCTTTGGTTAT
GTTTTCAGAGAATCAATTACTAAGGATCTCAGTTCTGAAGAAGAAAGAGG
TAATGATGACATTAGGGATGAGACCAGGGTAGCGGAGCAGAACGGAACGA
GCAAACATGAGATGGATAGGAACGGTGTAGACGTGGTACAAGAGCAGCAT
GCAAACCCGAAGTTTGAAATCGACATGAAGAGGGCACGCGAACTTGGTGT
GTATGGTTCGCAGTTCAAGGTTTTGAGAAGCGGACGTTCTGTCACAATGT
CGAAGACGGGGATTGTAGTACGTCCCGAAGACGTTGCAATCTCATCAGAA
GGAAATGAATTGAGACAAGTTCAAGGTGGCGCAGAAGACTCGAGCAAGCC
ACAATTGAAAGAGGACTCGGACAAGAAAACATTCGCGAGAAGTGCGACGA
TTCTTGGCGATACCTGTGACTCAAGTGCCATTGCAGATGCGGCCAGGAAC
ACAGATTTGCTGGTTCATGAGGCTACCTTCACGCACAGTTTAAGAACAAA
AGCTCGTATGTCGATGCACAGTACTGCTCGAATGACGGGTGAGTTTGGAA
AGACTATAAACGCGAAGAAGATTGCTCTCACACACTTTTCAAGTAGATAT
GAGGGATTGGTTATGAatcagaatgaagaagaggatggggattttgatga
atttgatgatggagatgaggatCTAGCAAGTGCGAACTCTTTGGTAGCTG
AGGCGAGACAGGGGTACGGGGACGGTAATGTGATTATTGTCGCGGCGGAA
GACTTTATGGAGCATGATATCCCACCAGTTGATGGGATGGACGGTGACGG
AGTGGCACTAGGAGAGGACGGTAATAGAGTAAATGAGTTTGTGAAAGAGG
AGGGGGTCCTAAGGAAGTGCTGA