Ggra9338.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9338.t1
Unique Name	Ggra9338.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	289

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000883_pilon	contig	tig00000883_pilon:12598..13464 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3067.XP_002946011.1
PFAMs	Peptidase_C1
Max annot lvl	2759\|Eukaryota
Evalue	7.77e-25
EggNOG OGs	COG4870@1\|root,2S8PN@2759\|Eukaryota
Description	Belongs to the peptidase C1 family
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9338	Ggra9338	Gracilaria gracilis GNS1m male	gene	tig00000883_pilon 12598..13464 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9338.t1.start1	Ggra9338.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000883_pilon 12598..12600 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9338.t1.CDS1	Ggra9338.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000883_pilon 12598..13464 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9338.t1.exon1	Ggra9338.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000883_pilon 12598..13464 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9338.t1.stop1	Ggra9338.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000883_pilon 13462..13464 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9338.t1	Ggra9338.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000883_pilon 12598..13464 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000883_pilon:12598..13464+
coding sequence from alignment at tig00000883_pilon:12598..13464+

mRNA sequence

>Ggra9338.t1 ID=Ggra9338.t1|Name=Ggra9338.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=289bp
MKYSAALFALLALFLATSHGAVIHQETAMFEFEDAEPLPSAEAVEDIEVI
AEDDVLQLQDLDGANKRRVGAHINVLADFSARVSVPTVSKQQEEAVYVVE
SSRTGYGRLTRTGVSVQRGTSARLEFDIKTKAVSAETLATFDSEFVRTLN
QTEREVYRRLSSSYRGGLNIPFLRFVGVNLGGQVSRTSMDRARDYWSEYE
TKASTARNIIESTKATDLRITGSLTAVGTSFIPTKAYAFIKVARVELQDG
STLTVVTTDAGDVLAGTGEGIPIDDNDDGDLEVIELAF*

spliced messenger RNA

>Ggra9338.t1 ID=Ggra9338.t1|Name=Ggra9338.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=867bp|location=Sequence derived from alignment at tig00000883_pilon:12598..13464+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAATACTCCGCTGCATTGTTTGCTTTGCTCGCCTTATTCTTGGCGAC
CTCGCATGGAGCCGTTATCCACCAGGAGACTGCAATGTTCGAGTTCGAGG
ACGCCGAACCGCTTCCGTCCGCGGAGGCTGTTGAAGACATCGAGGTAATT
GCCGAAGATGATGTATTGCAGCTGCAGGACCTCGATGGCGCCAATAAAAG
GCGCGTAGGTGCTCACATTAACGTTCTTGCCGATTTCTCAGCTAGAGTGT
CAGTTCCTACCGTCAGCAAGCAGCAGGAGGAGGCAGTATACGTCGTGGAA
TCTAGCCGCACAGGATACGGACGTCTCACTCGTACCGGAGTGAGTGTGCA
GCGAGGCACGTCTGCGCGGCTGGAGTTTGACATCAAAACTAAGGCTGTGA
GCGCTGAAACTCTGGCCACGTTTGATTCGGAGTTTGTTCGAACTCTCAAC
CAGACAGAGCGTGAGGTGTATAGAAGGTTGTCTTCATCGTATCGCGGAGG
TCTTAACATTCCATTCCTTCGTTTCGTTGGCGTCAACCTCGGTGGGCAGG
TCTCCAGAACATCCATGGACCGTGCCAGGGACTACTGGTCGGAGTACGAG
ACGAAGGCATCCACGGCTCGGAACATTATCGAAAGTACTAAGGCGACAGA
CCTTAGAATCACCGGTTCACTCACTGCGGTTGGAACAAGCTTTATCCCAA
CAAAGGCTTATGCTTTCATTAAGGTAGCTAGGGTTGAGCTCCAAGATGGC
TCCACCCTCACTGTGGTCACCACCGACGCAGGGGATGTTCTCGCTGGTAC
CGGCGAAGGTATTCCTATAGATGATAACGATGATGGTGATCTGGAGGTCA
TCGAACTTGCCTTTTGA

protein sequence of Ggra9338.t1

>Ggra9338.t1 ID=Ggra9338.t1|Name=Ggra9338.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=289bp
MKYSAALFALLALFLATSHGAVIHQETAMFEFEDAEPLPSAEAVEDIEVI
AEDDVLQLQDLDGANKRRVGAHINVLADFSARVSVPTVSKQQEEAVYVVE
SSRTGYGRLTRTGVSVQRGTSARLEFDIKTKAVSAETLATFDSEFVRTLN
QTEREVYRRLSSSYRGGLNIPFLRFVGVNLGGQVSRTSMDRARDYWSEYE
TKASTARNIIESTKATDLRITGSLTAVGTSFIPTKAYAFIKVARVELQDG
STLTVVTTDAGDVLAGTGEGIPIDDNDDGDLEVIELAF*

mRNA from alignment at tig00000883_pilon:12598..13464+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9338.t1 ID=Ggra9338.t1|Name=Ggra9338.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=867bp|location=Sequence derived from alignment at tig00000883_pilon:12598..13464+ (Gracilaria gracilis GNS1m male)
ATGAAATACTCCGCTGCATTGTTTGCTTTGCTCGCCTTATTCTTGGCGAC
CTCGCATGGAGCCGTTATCCACCAGGAGACTGCAATGTTCGAGTTCGAGG
ACGCCGAACCGCTTCCGTCCGCGGAGGCTGTTGAAGACATCGAGGTAATT
GCCGAAGATGATGTATTGCAGCTGCAGGACCTCGATGGCGCCAATAAAAG
GCGCGTAGGTGCTCACATTAACGTTCTTGCCGATTTCTCAGCTAGAGTGT
CAGTTCCTACCGTCAGCAAGCAGCAGGAGGAGGCAGTATACGTCGTGGAA
TCTAGCCGCACAGGATACGGACGTCTCACTCGTACCGGAGTGAGTGTGCA
GCGAGGCACGTCTGCGCGGCTGGAGTTTGACATCAAAACTAAGGCTGTGA
GCGCTGAAACTCTGGCCACGTTTGATTCGGAGTTTGTTCGAACTCTCAAC
CAGACAGAGCGTGAGGTGTATAGAAGGTTGTCTTCATCGTATCGCGGAGG
TCTTAACATTCCATTCCTTCGTTTCGTTGGCGTCAACCTCGGTGGGCAGG
TCTCCAGAACATCCATGGACCGTGCCAGGGACTACTGGTCGGAGTACGAG
ACGAAGGCATCCACGGCTCGGAACATTATCGAAAGTACTAAGGCGACAGA
CCTTAGAATCACCGGTTCACTCACTGCGGTTGGAACAAGCTTTATCCCAA
CAAAGGCTTATGCTTTCATTAAGGTAGCTAGGGTTGAGCTCCAAGATGGC
TCCACCCTCACTGTGGTCACCACCGACGCAGGGGATGTTCTCGCTGGTAC
CGGCGAAGGTATTCCTATAGATGATAACGATGATGGTGATCTGGAGGTCA
TCGAACTTGCCTTTTGA

Coding sequence (CDS) from alignment at tig00000883_pilon:12598..13464+

>Ggra9338.t1 ID=Ggra9338.t1|Name=Ggra9338.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=867bp|location=Sequence derived from alignment at tig00000883_pilon:12598..13464+ (Gracilaria gracilis GNS1m male)
ATGAAATACTCCGCTGCATTGTTTGCTTTGCTCGCCTTATTCTTGGCGAC
CTCGCATGGAGCCGTTATCCACCAGGAGACTGCAATGTTCGAGTTCGAGG
ACGCCGAACCGCTTCCGTCCGCGGAGGCTGTTGAAGACATCGAGGTAATT
GCCGAAGATGATGTATTGCAGCTGCAGGACCTCGATGGCGCCAATAAAAG
GCGCGTAGGTGCTCACATTAACGTTCTTGCCGATTTCTCAGCTAGAGTGT
CAGTTCCTACCGTCAGCAAGCAGCAGGAGGAGGCAGTATACGTCGTGGAA
TCTAGCCGCACAGGATACGGACGTCTCACTCGTACCGGAGTGAGTGTGCA
GCGAGGCACGTCTGCGCGGCTGGAGTTTGACATCAAAACTAAGGCTGTGA
GCGCTGAAACTCTGGCCACGTTTGATTCGGAGTTTGTTCGAACTCTCAAC
CAGACAGAGCGTGAGGTGTATAGAAGGTTGTCTTCATCGTATCGCGGAGG
TCTTAACATTCCATTCCTTCGTTTCGTTGGCGTCAACCTCGGTGGGCAGG
TCTCCAGAACATCCATGGACCGTGCCAGGGACTACTGGTCGGAGTACGAG
ACGAAGGCATCCACGGCTCGGAACATTATCGAAAGTACTAAGGCGACAGA
CCTTAGAATCACCGGTTCACTCACTGCGGTTGGAACAAGCTTTATCCCAA
CAAAGGCTTATGCTTTCATTAAGGTAGCTAGGGTTGAGCTCCAAGATGGC
TCCACCCTCACTGTGGTCACCACCGACGCAGGGGATGTTCTCGCTGGTAC
CGGCGAAGGTATTCCTATAGATGATAACGATGATGGTGATCTGGAGGTCA
TCGAACTTGCCTTTTGA