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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 103733.JNYO01000016_gene3342 |
| PFAMs | DUF1768 |
| Max annot lvl | 201174|Actinobacteria |
| KEGG ko | ko:K09935 |
| Evalue | 7.17e-50 |
| EggNOG OGs | COG5113@1|root,COG3236@2|Bacteria,2HQRT@201174|Actinobacteria,4E3MW@85010|Pseudonocardiales |
| Description | Domain of unknown function (DUF1768) |
| COG category | O |
| BRITE | ko00000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra9324.t1.start1 | Ggra9324.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000863_pilon 818458..818460 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra9324.t1.intron1 | Ggra9324.t1.intron1 | Gracilaria gracilis GNS1m male | intron | tig00000863_pilon 819314..823671 + |
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra9324.t1.stop1 | Ggra9324.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000863_pilon 824202..824204 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra9324.t1 ID=Ggra9324.t1|Name=Ggra9324.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=463bp MESVTNPVKAQYQSIPGVPGTAASYAQVPGGLIRNVNSIPLFRRFGSLVG LAVTVSLLAFVAGRAGIIERENGFRVSHLYPALPRKLHEARHFKFSNYPS LSRPLHSSYGSRLNPDSFISESVVHSDASSTLEDFTLDERVPTRQCGRRR VCRARLTVVKEGSAVVIKAGYYIYTKDGKVRTVDRGTRSRLRKTTTKQAR NWASKLLSGAGARLAEVNCTVSVNDIAEAILDGKDGVLTCPKTGDSRCDA LKTIGECTIPEAKEVDPCTEFVKTSAGVDSLAELQGFEAQASFVFFYGHD AAHGPQAMLSNFWRCPEPFTHSENRRYPTSEHYMMHGKAVLFGDEQRATA ILNASTPRSAKALGRKVRNFEAETWAQHRLQIVAEGCLLKFAQCEEARRF LLATGDRILVEAAPRDCIWGIGIGASHAHRCDPSKWRGLNLLGEALMMVR DRLRENHEDCSE* back to topspliced messenger RNA >Ggra9324.t1 ID=Ggra9324.t1|Name=Ggra9324.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1389bp|location=Sequence derived from alignment at tig00000863_pilon:818458..824204+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGGAGTCTGTCACAAACCCCGTTAAAGCTCAATACCAGTCTATCCCGGG CGTTCCAGGCACTGCCGCTTCTTATGCGCAAGTTCCAGGCGGTTTGATCC GAAATGTTAACTCTATTCCGCTCTTTCGCCGTTTTGGAAGCTTGGTTGGA CTGGCTGTAACCGTGTCGTTATTGGCATTTGTAGCGGGAAGAGCAGGAAT CATCGAACGTGAAAATGGCTTTCGTGTATCCCACCTATATCCCGCGCTTC CGAGGAAGCTTCATGAGGCTCGTCACTTTAAGTTCAGTAATTATCCTTCA CTGTCCCGGCCTTTGCACTCAAGCTATGGTTCTCGTCTCAATCCCGACAG CTTCATCTCCGAATCAGTTGTGCACAGCGACGCTTCTTCCACTTTAGAAG ACTTCACTTTGGATGAAAGGGTTCCAACGAGACAGTGCGGCAGGAGAAGG GTCTGTAGAGCCCGATTGACTGTGGTCAAGGAGGGGTCTGCAGTTGTTAT CAAGGCCGGTTACTACATCTACACCAAAGATGGAAAGGTTCGCACTGTTG ACCGAGGCACTAGATCGAGGCTCAGAAAGACTACGACCAAACAAGCTCGG AATTGGGCGAGTAAGCTGCTTAGTGGCGCCGGCGCTCGATTGGCAGAGGT TAATTGCACTGTCAGTGTGAATGACATAGCGGAAGCAATCTTGGATGGCA AAGATGGCGTGCTCACCTGTCCGAAAACCGGCGACTCTCGTTGCGATGCG CTGAAGACGATCGGGGAATGCACCATACCAGAGGCGAAGGAGGTGGACCC ATGCACAGAGTTTGTGAAAACTTCTGCAGGCGTGGACAGTTTGGCAGAGC TGCAGGGGTTCGAGGCGCAGGCTTCTTTTGTGTTCTTTTACGGTCACGAT GCTGCGCATGGACCGCAAGCTATGCTCTCAAACTTCTGGCGTTGTCCAGA GCCTTTCACACATTCTGAAAATCGTCGATATCCAACCTCAGAGCACTACA TGATGCATGGCAAAGCTGTTCTCTTCGGAGACGAACAACGGGCGACCGCT ATTTTGAACGCCTCCACGCCGCGCTCCGCAAAAGCGCTTGGGCGAAAAGT ACGCAACTTTGAAGCAGAAACTTGGGCACAACATCGTCTGCAAATTGTGG CGGAGGGATGTCTGCTGAAGTTTGCGCAGTGCGAGGAGGCGCGTCGTTTT TTACTGGCTACCGGCGATCGCATATTGGTGGAAGCAGCGCCGAGGGACTG CATCTGGGGCATAGGAATTGGTGCATCGCACGCTCACAGATGCGATCCAT CGAAATGGAGAGGACTGAATTTGCTTGGAGAAGCGCTCATGATGGTGCGA GATCGCCTTCGAGAGAACCATGAAGACTGCAGCGAATAG back to topprotein sequence of Ggra9324.t1 >Ggra9324.t1 ID=Ggra9324.t1|Name=Ggra9324.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=463bp
MESVTNPVKAQYQSIPGVPGTAASYAQVPGGLIRNVNSIPLFRRFGSLVG LAVTVSLLAFVAGRAGIIERENGFRVSHLYPALPRKLHEARHFKFSNYPS LSRPLHSSYGSRLNPDSFISESVVHSDASSTLEDFTLDERVPTRQCGRRR VCRARLTVVKEGSAVVIKAGYYIYTKDGKVRTVDRGTRSRLRKTTTKQAR NWASKLLSGAGARLAEVNCTVSVNDIAEAILDGKDGVLTCPKTGDSRCDA LKTIGECTIPEAKEVDPCTEFVKTSAGVDSLAELQGFEAQASFVFFYGHD AAHGPQAMLSNFWRCPEPFTHSENRRYPTSEHYMMHGKAVLFGDEQRATA ILNASTPRSAKALGRKVRNFEAETWAQHRLQIVAEGCLLKFAQCEEARRF LLATGDRILVEAAPRDCIWGIGIGASHAHRCDPSKWRGLNLLGEALMMVR DRLRENHEDCSE* back to topmRNA from alignment at tig00000863_pilon:818458..824204+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra9324.t1 ID=Ggra9324.t1|Name=Ggra9324.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=5747bp|location=Sequence derived from alignment at tig00000863_pilon:818458..824204+ (Gracilaria gracilis GNS1m male) ATGGAGTCTGTCACAAACCCCGTTAAAGCTCAATACCAGTCTATCCCGGG
CGTTCCAGGCACTGCCGCTTCTTATGCGCAAGTTCCAGGCGGTTTGATCC
GAAATGTTAACTCTATTCCGCTCTTTCGCCGTTTTGGAAGCTTGGTTGGA
CTGGCTGTAACCGTGTCGTTATTGGCATTTGTAGCGGGAAGAGCAGGAAT
CATCGAACGTGAAAATGGCTTTCGTGTATCCCACCTATATCCCGCGCTTC
CGAGGAAGCTTCATGAGGCTCGTCACTTTAAGTTCAGTAATTATCCTTCA
CTGTCCCGGCCTTTGCACTCAAGCTATGGTTCTCGTCTCAATCCCGACAG
CTTCATCTCCGAATCAGTTGTGCACAGCGACGCTTCTTCCACTTTAGAAG
ACTTCACTTTGGATGAAAGGGTTCCAACGAGACAGTGCGGCAGGAGAAGG
GTCTGTAGAGCCCGATTGACTGTGGTCAAGGAGGGGTCTGCAGTTGTTAT
CAAGGCCGGTTACTACATCTACACCAAAGATGGAAAGGTTCGCACTGTTG
ACCGAGGCACTAGATCGAGGCTCAGAAAGACTACGACCAAACAAGCTCGG
AATTGGGCGAGTAAGCTGCTTAGTGGCGCCGGCGCTCGATTGGCAGAGGT
TAATTGCACTGTCAGTGTGAATGACATAGCGGAAGCAATCTTGGATGGCA
AAGATGGCGTGCTCACCTGTCCGAAAACCGGCGACTCTCGTTGCGATGCG
CTGAAGACGATCGGGGAATGCACCATACCAGAGGCGAAGGAGGTGGACCC
ATGCACAGAGTTTGTGAAAACTTCTGCAGGCGTGGACAGTTTGGCAGAGC
TGCAGGGTGAATGTCCGACGGCCAAGTTCATGTACAACCGAGTCGGCGTT
TCTCTTCCTTTCTGCACAACtgagtgcagttccaatccaggtgtggcaca
caatgtgtatttggatttctacttgcaatcaaacttgccatcggaaaaca
aagcggactgcctttctgcaactcttatcccggcgtaccagtattttgcg
cagacagttctggcgtgtgattctgtaccacctggaCATGCATCGGAAGG
AAGGGTCATAATTGATCTTGCGAATAGTTATCAAGGTACCGCGCCAAAAG
AACTGGTGGACGCTGCCGAATCGCACGGTTGCACATTTACTTATGCTTAC
TACGTTGGTTCAGGGAGTTCAGTGGAGGATATAGTTAATGCTAGCTGTGC
AGCTGAGTAGTGGGGCGATGGTAGAAAAGGACGATGAAAAGCGTAGGGGA
GGCAATTGACACGGTTGGTTTAGTTATTTGTTttattgctctcttacgat
aggctgtatatggtatatcttttgttttgagcaagtgtaggagacacaga
gcacgcagcacttacgcactgtgctccaatagcGTCTGCAGACTGCCAAG
TCAGCAGTCGCACTGAGATTCACCACCCGTCCACCTTCCGATGGAACACA
GCGACACTTGTCCATCTTTATGTGGGGGATGTGAATCCATCACATTGTTG
GGGAGCCAACCAAAGCACGTACAAATTTCTAATGCTGAATCGCTATTTTT
TAAGAAATGAAATTATGTAAACATTATTcattacagtttatgcgacaaca
tagctttctacgttgctttcctgttttttatacaaagggtataaatactg
tgcaactcaaccgtctgtgacctcacgaagagctcttcgttcgcatctac
caacggtacccatggtacggctgcgtacgcgcctgctcgagtagggcgct
catccgatcgtagttcggcggcacctttccgattgcctcgtgcaccaacg
ctctgataaaatccgggatcggcgtaccgcggtggatcctcatcttgtcc
gcctcttcaaagttcttcagcacaacagcatgctgcttaggagtgaggtt
ataccacgggtaataggccaccctcccgtgcggtacgagcccgtcgtagt
cgtatcggaacaagccccccatcatgttcagcaaatctcctacatcattg
gctggatgactcacctgcagctcgcgcgattgaacgaaatcagtgagtag
gaaccaatcgctttcttggtccaaaccgcgcatgactttgctctccttaa
tggcgccgtgcgtaacattcaggctgtgtagcttTGACTGATTGAATGGA
CGCAGGGCCACGGCAAATATCGATGTTTTTCGATATCACAAgaacgtcca
agaaacaatcattgaagagaatcatgttgttcagctgaaatctagcttga
aaatttgttacacaaaagttgcgattgcccaagacacggacgtgaaggaa
tcatccgtttattgtgtaagttaatcgcctgtaatcgctcaaaactggct
gttttgagctaaagtagagaatgcttaatcaaaatctgccgcaaaaatat
tggtctgcttttttttgtgatctccttcaaaatcggcagagaagcgaaat
ctaTATAATGTTATATAAAACAAGTGGAAGCGGCCTCCGGCCGCGTGCGG
CGCTTTGCGCCGCGGGCGAAAAGATGATATCCCACACGATAGCAGCAAAA
TATGGGCGCACCAAACGGGTGCGCCAGCGGACCATTTTTGTTTTTTGAAC
TGATGACTTTTCTTTGCGAAGAATGCTAGATATTTTTTTATTTTGTACTT
TATGCTCGTGTATTCACTCAAGGTTTCTGGGATTTTACAGAATGGTTTCA
ATCTGATGAAAACACATTTTATACAGATTAAATTATTCCAGTTCAATAAT
CATATATACAAAGAATGTGTTGCAAACTTAATGGCTTCTCAATCTAACGT
TCAACAAATTAGCTTACGGCTGGAAAATACACACAATTGGATTGCTTTCC
TTTTTGTTCATTTGTACATTTTAACGGCAATAAAAAATGACAAAAAATGA
CAAAACATTCGAATCTATCACACTTTTTCACGCAACGCGCCGCTTTTTTA
TAAACGACCTCCATCCCAGTTCGCAAAATAGTAAAGCTATTCCCAAAATA
TGTCCAAGTTCTAAGCCTTATAATGACTAGAGTAAGTAGGAAAATAATTG
ACCACTTTATGCCTTCGTTCAATCAACAAACCAATTGCTTCACGCACTGA
TAATCCAGAATGGCACTGTTTTAATTAAAAACATTTACGTGTAcagacgt
attcccaactgcaggtgcaggcgtgatttcatcctcaacgtgaattctcc
ctctcgacgcgcgtgggatttcgttcgaatatccgcgatcacggaaagac
actgaaccctgtgcagccctccgttcattaattgtcgcacccttagagct
cccagaacttgtatgagatttgtttgatcgaccacgagtgggaaatactg
attcggatggactatctcgctcagctctgacgtttctcgaagcatgccct
ggtttggacttttttcggaattggcttctccggattgaggaggaagtgta
tagacattctgttaagaggtcgtttacgaccgtggtttccccgtcctcca
gaggagccttgtgagtgaaagctcatggttaatacttgaGAGTGGTAGAG
TTTTGGAGCTATAAACTTGCGTGTCACCGGTGAGTTCCTGTGACTTTATG
CTGGGATGGGAAAACGTAGATGTGTCTATATTGGGAACGTAACACAATTT
GTTGCCGAAAAACAATACGCCGTGTGACATATGTCGGGCAACTTTTGCTT
CCTTTGAGAGAGGAAAGACTGTTTTTTTAGATCATATGAGTAGTAGCAAA
TGAGGTGCCAGGAAGACGCATCTCTAGAGGGGTAGGGGTACATGGTATAC
CTTTTGTTGTATGAACGATACACGTTCGTTACCGAACGCTTTTTAATCGC
TCTACCATATCCAAATAAATTCTCATAGCCGTTGGACCTCTTAGCTCCAA
CGGCATATACTACTGCCGTTACAATAACTAAGGATCATGGTTGCTGTGCT
AGCGTATGTAAACTGGCAGAATACATGGCTTTCAAAACGTGAACAAAATA
ATGCTTTGGCTAACAACAACAACACCTGCTATCGATATGTGAGTAAACGT
GGGTACACATTAAATGATCAACCTAGTATACCATTGatgagctaaagtgt
agtgaaccgggtagaaagagcggcagggccgtggttcgcaccacgaaccc
caggcccacacaaagagcacacgaaggcgcttaccgattgagctatggcc
gctcacggtgtggtgaccccgtgttacaccgccggaagtgttatcgtgaT
TGACGCACCACAATAAATGCTCTTTACACATCGAATTCTCGGCATCTCCA
AGGGTCACTAATAATTGCACTTGAAAATGTGGATGAAAACATATTGATGG
CGACACCGGAAGCGAAATATCGACAATGGCCTGCTTTTTGGCCTCAACAA
ATTTATACGCGTCAAACAAGCTGTCTGAAAGAAGTATACATGTACAAATC
TCGTAACCGATTGCAGCTTGCAACGTAGATTCGAAAACTTAGACAAATAC
GTAAAAGGCATCAAAGAGCTCTTGCAAGCACAAGATGCACTTTAAAACGA
ATGGGAATCATAAAACTCATTGTACGTCGACGTAGCCTGAAATAGGCAAA
ATCGTTTTTTCTTTGGCACACGGACGTGGACAATTATAATCAGAAACAAG
AAGAAAGCGCTTTTAATGATTTCTATTTGTGATTTCAGCTCACGTCCATT
ATCCCACTCTGCTCGCAAAGCCAGAACTAAAGAAGCACTTCTCTGAAAGA
ATATCACAACACTAGCAGCGGGTTGATAATATCAACTTGATATAATAGAT
CATCATGAATAATGGTGACATAATTTTCTAAAATTTTGTGGGATACGTTT
CTGAAATGCGAGGAAGGACACGAACAACACATATCAGACGTGTCGTTTCA
TTGTTGTTGTTGCGCGTAACTGCGTAACTGCATAATTCAAACGGAGCGCA
GCAAGGCCTCGCAGGATGCGTTGGCAGCCAAGAAAGCCTTTTACACTTGT
ACACTTGGTGTACAGCGGTAGCGTTTCCTTGGTTCGTGCACCTTCGTATA
TGAATATAAGCCAGTCAAGCCAAACACCTGGTTTCGAAGGAATCGTCCGA
TAGCAGCGCTGGGCAACCCGATATGGAAGGTAGGGCGTATTCTCGTTCGG
CTCTCGTGGCGCAGGGTTCGAGGCGCAGGCTTCTTTTGTGTTCTTTTACG
GTCACGATGCTGCGCATGGACCGCAAGCTATGCTCTCAAACTTCTGGCGT
TGTCCAGAGCCTTTCACACATTCTGAAAATCGTCGATATCCAACCTCAGA
GCACTACATGATGCATGGCAAAGCTGTTCTCTTCGGAGACGAACAACGGG
CGACCGCTATTTTGAACGCCTCCACGCCGCGCTCCGCAAAAGCGCTTGGG
CGAAAAGTACGCAACTTTGAAGCAGAAACTTGGGCACAACATCGTCTGCA
AATTGTGGCGGAGGGATGTCTGCTGAAGTTTGCGCAGTGCGAGGAGGCGC
GTCGTTTTTTACTGGCTACCGGCGATCGCATATTGGTGGAAGCAGCGCCG
AGGGACTGCATCTGGGGCATAGGAATTGGTGCATCGCACGCTCACAGATG
CGATCCATCGAAATGGAGAGGACTGAATTTGCTTGGAGAAGCGCTCATGA
TGGTGCGAGATCGCCTTCGAGAGAACCATGAAGACTGCAGCGAATAG back to topCoding sequence (CDS) from alignment at tig00000863_pilon:818458..824204+ >Ggra9324.t1 ID=Ggra9324.t1|Name=Ggra9324.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1389bp|location=Sequence derived from alignment at tig00000863_pilon:818458..824204+ (Gracilaria gracilis GNS1m male) ATGGAGTCTGTCACAAACCCCGTTAAAGCTCAATACCAGTCTATCCCGGG CGTTCCAGGCACTGCCGCTTCTTATGCGCAAGTTCCAGGCGGTTTGATCC GAAATGTTAACTCTATTCCGCTCTTTCGCCGTTTTGGAAGCTTGGTTGGA CTGGCTGTAACCGTGTCGTTATTGGCATTTGTAGCGGGAAGAGCAGGAAT CATCGAACGTGAAAATGGCTTTCGTGTATCCCACCTATATCCCGCGCTTC CGAGGAAGCTTCATGAGGCTCGTCACTTTAAGTTCAGTAATTATCCTTCA CTGTCCCGGCCTTTGCACTCAAGCTATGGTTCTCGTCTCAATCCCGACAG CTTCATCTCCGAATCAGTTGTGCACAGCGACGCTTCTTCCACTTTAGAAG ACTTCACTTTGGATGAAAGGGTTCCAACGAGACAGTGCGGCAGGAGAAGG GTCTGTAGAGCCCGATTGACTGTGGTCAAGGAGGGGTCTGCAGTTGTTAT CAAGGCCGGTTACTACATCTACACCAAAGATGGAAAGGTTCGCACTGTTG ACCGAGGCACTAGATCGAGGCTCAGAAAGACTACGACCAAACAAGCTCGG AATTGGGCGAGTAAGCTGCTTAGTGGCGCCGGCGCTCGATTGGCAGAGGT TAATTGCACTGTCAGTGTGAATGACATAGCGGAAGCAATCTTGGATGGCA AAGATGGCGTGCTCACCTGTCCGAAAACCGGCGACTCTCGTTGCGATGCG CTGAAGACGATCGGGGAATGCACCATACCAGAGGCGAAGGAGGTGGACCC ATGCACAGAGTTTGTGAAAACTTCTGCAGGCGTGGACAGTTTGGCAGAGC TGCAGGGGTTCGAGGCGCAGGCTTCTTTTGTGTTCTTTTACGGTCACGAT GCTGCGCATGGACCGCAAGCTATGCTCTCAAACTTCTGGCGTTGTCCAGA GCCTTTCACACATTCTGAAAATCGTCGATATCCAACCTCAGAGCACTACA TGATGCATGGCAAAGCTGTTCTCTTCGGAGACGAACAACGGGCGACCGCT ATTTTGAACGCCTCCACGCCGCGCTCCGCAAAAGCGCTTGGGCGAAAAGT ACGCAACTTTGAAGCAGAAACTTGGGCACAACATCGTCTGCAAATTGTGG CGGAGGGATGTCTGCTGAAGTTTGCGCAGTGCGAGGAGGCGCGTCGTTTT TTACTGGCTACCGGCGATCGCATATTGGTGGAAGCAGCGCCGAGGGACTG CATCTGGGGCATAGGAATTGGTGCATCGCACGCTCACAGATGCGATCCAT CGAAATGGAGAGGACTGAATTTGCTTGGAGAAGCGCTCATGATGGTGCGA GATCGCCTTCGAGAGAACCATGAAGACTGCAGCGAATAG back to top
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