Ggra9317.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9317.t1
Unique NameGgra9317.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length217
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000863_piloncontigtig00000863_pilon:607761..608411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9317Ggra9317Gracilaria gracilis GNS1m malegenetig00000863_pilon 607761..608411 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9317.t1.start1Ggra9317.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000863_pilon 607761..607763 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9317.t1.CDS1Ggra9317.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000863_pilon 607761..608411 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9317.t1.exon1Ggra9317.t1.exon1Gracilaria gracilis GNS1m maleexontig00000863_pilon 607761..608411 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9317.t1.stop1Ggra9317.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000863_pilon 608409..608411 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9317.t1Ggra9317.t1Gracilaria gracilis GNS1m malepolypeptidetig00000863_pilon 607761..608411 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9317.t1 ID=Ggra9317.t1|Name=Ggra9317.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=217bp
MKLQLMPFVIFALLAYLPSAPNSLSFAAPEPSPLPIATPDLLREDLLPCD
DLGQLPVPSDLAPSFEEPFPSEPPLFEIITCTSGGGCNVDFGREFNCRNS
QIDILPDDETAVLLLSEFDEQGASQITFRARVLDSSITSDDPDEPVPSIP
WVSTQDDIEQTICEEAPVPTFTIGPIEIDFFGPMAFGGPFGTCCRACSFL
SARRAVPPPFSCCSAC*
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spliced messenger RNA

>Ggra9317.t1 ID=Ggra9317.t1|Name=Ggra9317.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=651bp|location=Sequence derived from alignment at tig00000863_pilon:607761..608411+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTACAGCTAATGCCCTTCGTGATCTTTGCCCTGCTTGCATATTT
ACCTTCCGCCCCGAATTCTCTCTCATTCGCCGCCCCAGAGCCGTCTCCGC
TGCCGATCGCCACACCTGATCTACTGCGTGAAGATTTGTTGCCGTGCGAT
GACCTAGGACAGCTCCCTGTCCCCTCCGATTTAGCTCCATCTTTTGAAGA
ACCGTTTCCATCCGAGCCACCGCTCTTCGAGATAATCACATGCACATCCG
GTGGAGGCTGCAACGTAGATTTTGGACGCGAATTCAATTGCCGCAATTCA
CAGATCGACATCCTGCCGGATGACGAAACGGCCGTGCTGCTGCTCTCCGA
GTTTGATGAACAAGGTGCTTCTCAGATTACATTCCGAGCGAGAGTTCTGG
ACTCATCCATCACATCTGACGACCCCGACGAGCCTGTACCCTCAATTCCC
TGGGTTTCAACACAAGACGACATTGAGCAAACCATCTGTGAAGAGGCCCC
TGTTCCCACGTTTACTATCGGCCCTATTGAAATCGACTTCTTTGGGCCAA
TGGCCTTTGGAGGGCCTTTTGGTACTTGCTGTAGGGCTTGCTCGTTCTTG
AGCGCGAGACGTGCTGTGCCGCCTCCATTCTCTTGTTGCTCGGCGTGCTG
A
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protein sequence of Ggra9317.t1

>Ggra9317.t1 ID=Ggra9317.t1|Name=Ggra9317.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=217bp
MKLQLMPFVIFALLAYLPSAPNSLSFAAPEPSPLPIATPDLLREDLLPCD
DLGQLPVPSDLAPSFEEPFPSEPPLFEIITCTSGGGCNVDFGREFNCRNS
QIDILPDDETAVLLLSEFDEQGASQITFRARVLDSSITSDDPDEPVPSIP
WVSTQDDIEQTICEEAPVPTFTIGPIEIDFFGPMAFGGPFGTCCRACSFL
SARRAVPPPFSCCSAC*
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mRNA from alignment at tig00000863_pilon:607761..608411+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9317.t1 ID=Ggra9317.t1|Name=Ggra9317.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=651bp|location=Sequence derived from alignment at tig00000863_pilon:607761..608411+ (Gracilaria gracilis GNS1m male)
ATGAAGCTACAGCTAATGCCCTTCGTGATCTTTGCCCTGCTTGCATATTT
ACCTTCCGCCCCGAATTCTCTCTCATTCGCCGCCCCAGAGCCGTCTCCGC
TGCCGATCGCCACACCTGATCTACTGCGTGAAGATTTGTTGCCGTGCGAT
GACCTAGGACAGCTCCCTGTCCCCTCCGATTTAGCTCCATCTTTTGAAGA
ACCGTTTCCATCCGAGCCACCGCTCTTCGAGATAATCACATGCACATCCG
GTGGAGGCTGCAACGTAGATTTTGGACGCGAATTCAATTGCCGCAATTCA
CAGATCGACATCCTGCCGGATGACGAAACGGCCGTGCTGCTGCTCTCCGA
GTTTGATGAACAAGGTGCTTCTCAGATTACATTCCGAGCGAGAGTTCTGG
ACTCATCCATCACATCTGACGACCCCGACGAGCCTGTACCCTCAATTCCC
TGGGTTTCAACACAAGACGACATTGAGCAAACCATCTGTGAAGAGGCCCC
TGTTCCCACGTTTACTATCGGCCCTATTGAAATCGACTTCTTTGGGCCAA
TGGCCTTTGGAGGGCCTTTTGGTACTTGCTGTAGGGCTTGCTCGTTCTTG
AGCGCGAGACGTGCTGTGCCGCCTCCATTCTCTTGTTGCTCGGCGTGCTG
A
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Coding sequence (CDS) from alignment at tig00000863_pilon:607761..608411+

>Ggra9317.t1 ID=Ggra9317.t1|Name=Ggra9317.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=651bp|location=Sequence derived from alignment at tig00000863_pilon:607761..608411+ (Gracilaria gracilis GNS1m male)
ATGAAGCTACAGCTAATGCCCTTCGTGATCTTTGCCCTGCTTGCATATTT
ACCTTCCGCCCCGAATTCTCTCTCATTCGCCGCCCCAGAGCCGTCTCCGC
TGCCGATCGCCACACCTGATCTACTGCGTGAAGATTTGTTGCCGTGCGAT
GACCTAGGACAGCTCCCTGTCCCCTCCGATTTAGCTCCATCTTTTGAAGA
ACCGTTTCCATCCGAGCCACCGCTCTTCGAGATAATCACATGCACATCCG
GTGGAGGCTGCAACGTAGATTTTGGACGCGAATTCAATTGCCGCAATTCA
CAGATCGACATCCTGCCGGATGACGAAACGGCCGTGCTGCTGCTCTCCGA
GTTTGATGAACAAGGTGCTTCTCAGATTACATTCCGAGCGAGAGTTCTGG
ACTCATCCATCACATCTGACGACCCCGACGAGCCTGTACCCTCAATTCCC
TGGGTTTCAACACAAGACGACATTGAGCAAACCATCTGTGAAGAGGCCCC
TGTTCCCACGTTTACTATCGGCCCTATTGAAATCGACTTCTTTGGGCCAA
TGGCCTTTGGAGGGCCTTTTGGTACTTGCTGTAGGGCTTGCTCGTTCTTG
AGCGCGAGACGTGCTGTGCCGCCTCCATTCTCTTGTTGCTCGGCGTGCTG
A
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