Ggra9240.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9240.t1
Unique NameGgra9240.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length450
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:557436..558785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog67593.Physo132914
Max annot lvl4776|Peronosporales
Evalue2.88e-27
EggNOG OGs2D3E4@1|root,2SR8S@2759|Eukaryota,3QH48@4776|Peronosporales
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9240Ggra9240Gracilaria gracilis GNS1m malegenetig00000075_pilon 557436..558785 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9240.t1.stop1Ggra9240.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 557436..557438 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9240.t1.CDS1Ggra9240.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 557436..558785 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9240.t1.exon1Ggra9240.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 557436..558785 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9240.t1.start1Ggra9240.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 558783..558785 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9240.t1Ggra9240.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 557436..558785 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9240.t1 ID=Ggra9240.t1|Name=Ggra9240.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=450bp
MLKLTELVEKRIEKELKVAKRGAILHDGWTCGGVHYVALFASYIQKHLNV
SSNPKKDVQETVELALLSCSPMAKAVSEDPEGDTEGSEPVNAQEAVEFNA
STHAEHIVEMFRFYDIDVSLWIICQIADNFLVNRKVAKLLSIPHVGCKSH
LLNLEVNSMVETTVDLKRTLESVHETMIHCKQRLRNAALLQNFIELRPVL
YNRTRWSGKLYVLQRFLRIRDELIEVVNDERSDLYVNSSASFNRKVERYC
KQLQQIDYATMELQTKKLPLSQCQNVLDCLVADVGNGFNDSNSPLHLCFL
KNHYIDFAADILPNKCFERGVCKIQENRISALSVAERDAFVRLLNPVEGT
DDEEDVSFATSMTTYKKHFVQWKRRKIVSQTGYMNCDFVLGSVAEVERLW
SIADNILTDNRMRTTPQLFETIIFLRVNSRFWDVYLVREALRLLQGADK*
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spliced messenger RNA

>Ggra9240.t1 ID=Ggra9240.t1|Name=Ggra9240.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1350bp|location=Sequence derived from alignment at tig00000075_pilon:557436..558785- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGAAGTTGACAGAGTTGGTGGAGAAACGAATCGAGAAAGAACTCAA
GGTTGCAAAACGAGGAGCGATTCTACATGACGGGTGGACATGTGGTGGCG
TTCATTATGTCGCCTTGTTTGCTTCATACATCCAGAAGCATTTAAATGTG
TCCTCAAACCCGAAAAAAGATGTCCAGGAGACGGTAGAGCTTGCGCTGTT
ATCCTGTTCGCCAATGGCAAAAGCTGTCTCTGAGGACCCTGAGGGAGACA
CTGAGGGTTCTGAGCCTGTGAATGCACAGGAAGCTGTTGAATTCAACGCA
TCGACCCATGCGGAACACATCGTAGAGATGTTTCGTTTCTACGATATTGA
TGTTTCCCTCTGGATCATCTGTCAGATAGCTGACAACTTCCTTGTGAACC
GTAAGGTGGCCAAACTACTGAGTATACCCCACGTTGGATGCAAAAGTCAC
TTGTTGAATTTAGAGGTGAACTCGATGGTGGAGACGACGGTCGATTTGAA
GAGGACTCTAGAATCTGTGCACGAGACAATGATTCATTGTAAACAACGAC
TACGCAATGCGGCACTTCTCCAAAATTTCATTGAGCTGCGACCGGTTTTA
TACAACCGCACAAGATGGTCAGGAAAGCTCTACGTGCTTCAAAGATTTTT
ACGTATTCGGGATGAGTTGATTGAAGTTGTTAATGATGAGCGATCTGACT
TATATGTCAATAGTTCGGCGTCATTCAATAGAAAGGTGGAAAGATACTGC
AAACAGTTGCAGCAAATTGACTATGCCACCATGGAGCTACAAACAAAAAA
ACTGCCTCTGTCACAGTGCCAGAATGTTTTGGACTGTCTGGTGGCCGATG
TTGGTAATGGATTCAATGATTCAAACTCTCCGCTTCATCTCTGCTTTTTG
AAGAATCACTACATCGATTTTGCAGCTGATATCCTCCCAAACAAATGTTT
TGAGAGAGGAGTATGCAAAATACAAGAAAATCGTATTTCTGCTCTGTCTG
TTGCTGAACGGGACGCTTTTGTAAGACTTCTGAATCCTGTGGAAGGTACT
GATGACGAGGAGGATGTCAGTTTTGCTACATCAATGACGACGTACAAGAA
ACATTTTGTTCAGTGGAAGAGACGCAAAATTGTGTCACAGACTGGCTACA
TGAACTGTGACTTTGTGCTTGGCTCCGTCGCAGAAGTGGAGCGGCTATGG
TCAATTGCTGATAATATTCTGACGGACAATCGGATGAGAACTACTCCACA
ACTGTTTGAAACAATCATCTTTCTTCGCGTGAATTCTCGATTTTGGGATG
TCTACTTAGTTCGTGAAGCATTGAGGTTGCTTCAGGGAGCTGATAAATAG
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protein sequence of Ggra9240.t1

>Ggra9240.t1 ID=Ggra9240.t1|Name=Ggra9240.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=450bp
MLKLTELVEKRIEKELKVAKRGAILHDGWTCGGVHYVALFASYIQKHLNV
SSNPKKDVQETVELALLSCSPMAKAVSEDPEGDTEGSEPVNAQEAVEFNA
STHAEHIVEMFRFYDIDVSLWIICQIADNFLVNRKVAKLLSIPHVGCKSH
LLNLEVNSMVETTVDLKRTLESVHETMIHCKQRLRNAALLQNFIELRPVL
YNRTRWSGKLYVLQRFLRIRDELIEVVNDERSDLYVNSSASFNRKVERYC
KQLQQIDYATMELQTKKLPLSQCQNVLDCLVADVGNGFNDSNSPLHLCFL
KNHYIDFAADILPNKCFERGVCKIQENRISALSVAERDAFVRLLNPVEGT
DDEEDVSFATSMTTYKKHFVQWKRRKIVSQTGYMNCDFVLGSVAEVERLW
SIADNILTDNRMRTTPQLFETIIFLRVNSRFWDVYLVREALRLLQGADK*
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mRNA from alignment at tig00000075_pilon:557436..558785-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9240.t1 ID=Ggra9240.t1|Name=Ggra9240.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1350bp|location=Sequence derived from alignment at tig00000075_pilon:557436..558785- (Gracilaria gracilis GNS1m male)
ATGCTGAAGTTGACAGAGTTGGTGGAGAAACGAATCGAGAAAGAACTCAA
GGTTGCAAAACGAGGAGCGATTCTACATGACGGGTGGACATGTGGTGGCG
TTCATTATGTCGCCTTGTTTGCTTCATACATCCAGAAGCATTTAAATGTG
TCCTCAAACCCGAAAAAAGATGTCCAGGAGACGGTAGAGCTTGCGCTGTT
ATCCTGTTCGCCAATGGCAAAAGCTGTCTCTGAGGACCCTGAGGGAGACA
CTGAGGGTTCTGAGCCTGTGAATGCACAGGAAGCTGTTGAATTCAACGCA
TCGACCCATGCGGAACACATCGTAGAGATGTTTCGTTTCTACGATATTGA
TGTTTCCCTCTGGATCATCTGTCAGATAGCTGACAACTTCCTTGTGAACC
GTAAGGTGGCCAAACTACTGAGTATACCCCACGTTGGATGCAAAAGTCAC
TTGTTGAATTTAGAGGTGAACTCGATGGTGGAGACGACGGTCGATTTGAA
GAGGACTCTAGAATCTGTGCACGAGACAATGATTCATTGTAAACAACGAC
TACGCAATGCGGCACTTCTCCAAAATTTCATTGAGCTGCGACCGGTTTTA
TACAACCGCACAAGATGGTCAGGAAAGCTCTACGTGCTTCAAAGATTTTT
ACGTATTCGGGATGAGTTGATTGAAGTTGTTAATGATGAGCGATCTGACT
TATATGTCAATAGTTCGGCGTCATTCAATAGAAAGGTGGAAAGATACTGC
AAACAGTTGCAGCAAATTGACTATGCCACCATGGAGCTACAAACAAAAAA
ACTGCCTCTGTCACAGTGCCAGAATGTTTTGGACTGTCTGGTGGCCGATG
TTGGTAATGGATTCAATGATTCAAACTCTCCGCTTCATCTCTGCTTTTTG
AAGAATCACTACATCGATTTTGCAGCTGATATCCTCCCAAACAAATGTTT
TGAGAGAGGAGTATGCAAAATACAAGAAAATCGTATTTCTGCTCTGTCTG
TTGCTGAACGGGACGCTTTTGTAAGACTTCTGAATCCTGTGGAAGGTACT
GATGACGAGGAGGATGTCAGTTTTGCTACATCAATGACGACGTACAAGAA
ACATTTTGTTCAGTGGAAGAGACGCAAAATTGTGTCACAGACTGGCTACA
TGAACTGTGACTTTGTGCTTGGCTCCGTCGCAGAAGTGGAGCGGCTATGG
TCAATTGCTGATAATATTCTGACGGACAATCGGATGAGAACTACTCCACA
ACTGTTTGAAACAATCATCTTTCTTCGCGTGAATTCTCGATTTTGGGATG
TCTACTTAGTTCGTGAAGCATTGAGGTTGCTTCAGGGAGCTGATAAATAG
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Coding sequence (CDS) from alignment at tig00000075_pilon:557436..558785-

>Ggra9240.t1 ID=Ggra9240.t1|Name=Ggra9240.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1350bp|location=Sequence derived from alignment at tig00000075_pilon:557436..558785- (Gracilaria gracilis GNS1m male)
ATGCTGAAGTTGACAGAGTTGGTGGAGAAACGAATCGAGAAAGAACTCAA
GGTTGCAAAACGAGGAGCGATTCTACATGACGGGTGGACATGTGGTGGCG
TTCATTATGTCGCCTTGTTTGCTTCATACATCCAGAAGCATTTAAATGTG
TCCTCAAACCCGAAAAAAGATGTCCAGGAGACGGTAGAGCTTGCGCTGTT
ATCCTGTTCGCCAATGGCAAAAGCTGTCTCTGAGGACCCTGAGGGAGACA
CTGAGGGTTCTGAGCCTGTGAATGCACAGGAAGCTGTTGAATTCAACGCA
TCGACCCATGCGGAACACATCGTAGAGATGTTTCGTTTCTACGATATTGA
TGTTTCCCTCTGGATCATCTGTCAGATAGCTGACAACTTCCTTGTGAACC
GTAAGGTGGCCAAACTACTGAGTATACCCCACGTTGGATGCAAAAGTCAC
TTGTTGAATTTAGAGGTGAACTCGATGGTGGAGACGACGGTCGATTTGAA
GAGGACTCTAGAATCTGTGCACGAGACAATGATTCATTGTAAACAACGAC
TACGCAATGCGGCACTTCTCCAAAATTTCATTGAGCTGCGACCGGTTTTA
TACAACCGCACAAGATGGTCAGGAAAGCTCTACGTGCTTCAAAGATTTTT
ACGTATTCGGGATGAGTTGATTGAAGTTGTTAATGATGAGCGATCTGACT
TATATGTCAATAGTTCGGCGTCATTCAATAGAAAGGTGGAAAGATACTGC
AAACAGTTGCAGCAAATTGACTATGCCACCATGGAGCTACAAACAAAAAA
ACTGCCTCTGTCACAGTGCCAGAATGTTTTGGACTGTCTGGTGGCCGATG
TTGGTAATGGATTCAATGATTCAAACTCTCCGCTTCATCTCTGCTTTTTG
AAGAATCACTACATCGATTTTGCAGCTGATATCCTCCCAAACAAATGTTT
TGAGAGAGGAGTATGCAAAATACAAGAAAATCGTATTTCTGCTCTGTCTG
TTGCTGAACGGGACGCTTTTGTAAGACTTCTGAATCCTGTGGAAGGTACT
GATGACGAGGAGGATGTCAGTTTTGCTACATCAATGACGACGTACAAGAA
ACATTTTGTTCAGTGGAAGAGACGCAAAATTGTGTCACAGACTGGCTACA
TGAACTGTGACTTTGTGCTTGGCTCCGTCGCAGAAGTGGAGCGGCTATGG
TCAATTGCTGATAATATTCTGACGGACAATCGGATGAGAACTACTCCACA
ACTGTTTGAAACAATCATCTTTCTTCGCGTGAATTCTCGATTTTGGGATG
TCTACTTAGTTCGTGAAGCATTGAGGTTGCTTCAGGGAGCTGATAAATAG
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