Ggra9214.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9214.t1
Unique NameGgra9214.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length421
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:401396..402658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9214Ggra9214Gracilaria gracilis GNS1m malegenetig00000075_pilon 401396..402658 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9214.t1.stop1Ggra9214.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 401396..401398 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9214.t1.CDS1Ggra9214.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 401396..402658 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9214.t1.exon1Ggra9214.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 401396..402658 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9214.t1.start1Ggra9214.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 402656..402658 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9214.t1Ggra9214.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 401396..402658 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9214.t1 ID=Ggra9214.t1|Name=Ggra9214.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=421bp
MSDAVNAAYEQSELLRQQWERLKADMLAIDPSLTDAAARRDELRAQMDQV
MNQLSSVVSETRRLVPNANTADEDEPIMEARPVQYSANHRHVIYRTYESS
DESSDGEHSLSVPEEPPKLLQKPPVQPVRITSPPTSPIADVTLIPSPESN
RVSVQAKRGSLATFKKGIRGKLRLNDSNSDTPRVASPAEPTMPAPVAKQS
RDSLLVEQTRLERESRRLKRKPYRCDEDDKRLLEISGALSRISSTLAEMP
EIASPRNEKLYDDDVDVTSPQNRTHIESLSEKDVQVSPVTEDDNNRPFDS
QSVDSPAQSRPNKSSHPKRKKGWGALEAGFASFKALGRTVRHAAAGSRTE
SKQEASRTRERTISAPNAQDLFSETVNRVHERGERLEGVAEESEHMANDA
NDMFAAARALNQRQKGGFFS*
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spliced messenger RNA

>Ggra9214.t1 ID=Ggra9214.t1|Name=Ggra9214.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1263bp|location=Sequence derived from alignment at tig00000075_pilon:401396..402658- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGACGCGGTGAATGCGGCTTATGAGCAATCGGAACTGCTTCGCCA
GCAATGGGAGCGACTCAAGGCTGATATGTTGGCCATAGACCCTTCGCTGA
CTGATGCGGCTGCGCGACGCGACGAGCTACGCGCCCAGATGGATCAGGTT
ATGAATCAGTTGTCTTCGGTCGTTAGTGAGACCCGTCGCTTGGTTCCTAA
TGCCAACACTGCCGATGAGGATGAGCCTATAATGGAGGCGCGTCCGGTGC
AATATTCTGCCAATCATAGACATGTTATATATCGCACATACGAGTCTTCT
GATGAAAGTTCCGACGGAGAGCACTCACTTTCTGTGCCGGAGGAACCGCC
GAAACTGCTGCAAAAACCACCAGTGCAACCAGTGCGCATCACCTCGCCGC
CAACGTCACCAATTGCAGATGTAACCCTCATTCCATCGCCCGAGTCCAAT
CGCGTGAGCGTGCAAGCTAAGCGAGGCTCGTTGGCTACCTTCAAGAAAGG
AATACGTGGAAAGCTCCGTCTCAATGACTCCAATAGTGATACGCCGCGTG
TTGCCAGCCCCGCTGAACCTACCATGCCGGCTCCCGTTGCAAAGCAAAGT
CGAGATAGCCTTTTGGTGGAACAAACCCGTCTGGAGCGCGAATCTCGACG
TTTGAAACGAAAGCCATATCGTTGTGATGAAGATGACAAACGTTTATTGG
AGATTTCCGGTGCTCTATCACGCATTTCTTCTACGCTGGCGGAAATGCCG
GAGATTGCCTCCCCCCGAAATGAAAAGTTGTACGATGACGACGTCGACGT
GACAAGCCCCCAAAATCGCACCCACATTGAATCTTTGTCGGAAAAGGATG
TCCAAGTTTCCCCCGTCACCGAGGATGATAACAACAGGCCGTTTGATTCC
CAATCAGTGGACTCGCCAGCTCAGTCACGGCCAAACAAGAGTTCACATCC
GAAGAGGAAGAAAGGATGGGGTGCCTTGGAGGCCGGTTTTGCTTCATTCA
AGGCATTAGGACGTACAGTGCGACATGCTGCTGCAGGCTCACGAACTGAA
TCGAAACAGGAAGCATCTAGAACAAGAGAAAGAACAATATCCGCTCCCAA
CGCACAGGACTTGTTTTCTGAAACTGTAAATCGTGTGCATGAGAGAGGAG
AAAGGCTTGAAGGAGTCGCAGAAGAATCGGAGCATATGGCCAACGATGCC
AATGACATGTTTGCGGCCGCGAGGGCATTGAATCAACGACAGAAGGGCGG
GTTCTTTTCATAG
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protein sequence of Ggra9214.t1

>Ggra9214.t1 ID=Ggra9214.t1|Name=Ggra9214.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=421bp
MSDAVNAAYEQSELLRQQWERLKADMLAIDPSLTDAAARRDELRAQMDQV
MNQLSSVVSETRRLVPNANTADEDEPIMEARPVQYSANHRHVIYRTYESS
DESSDGEHSLSVPEEPPKLLQKPPVQPVRITSPPTSPIADVTLIPSPESN
RVSVQAKRGSLATFKKGIRGKLRLNDSNSDTPRVASPAEPTMPAPVAKQS
RDSLLVEQTRLERESRRLKRKPYRCDEDDKRLLEISGALSRISSTLAEMP
EIASPRNEKLYDDDVDVTSPQNRTHIESLSEKDVQVSPVTEDDNNRPFDS
QSVDSPAQSRPNKSSHPKRKKGWGALEAGFASFKALGRTVRHAAAGSRTE
SKQEASRTRERTISAPNAQDLFSETVNRVHERGERLEGVAEESEHMANDA
NDMFAAARALNQRQKGGFFS*
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mRNA from alignment at tig00000075_pilon:401396..402658-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9214.t1 ID=Ggra9214.t1|Name=Ggra9214.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1263bp|location=Sequence derived from alignment at tig00000075_pilon:401396..402658- (Gracilaria gracilis GNS1m male)
ATGTCCGACGCGGTGAATGCGGCTTATGAGCAATCGGAACTGCTTCGCCA
GCAATGGGAGCGACTCAAGGCTGATATGTTGGCCATAGACCCTTCGCTGA
CTGATGCGGCTGCGCGACGCGACGAGCTACGCGCCCAGATGGATCAGGTT
ATGAATCAGTTGTCTTCGGTCGTTAGTGAGACCCGTCGCTTGGTTCCTAA
TGCCAACACTGCCGATGAGGATGAGCCTATAATGGAGGCGCGTCCGGTGC
AATATTCTGCCAATCATAGACATGTTATATATCGCACATACGAGTCTTCT
GATGAAAGTTCCGACGGAGAGCACTCACTTTCTGTGCCGGAGGAACCGCC
GAAACTGCTGCAAAAACCACCAGTGCAACCAGTGCGCATCACCTCGCCGC
CAACGTCACCAATTGCAGATGTAACCCTCATTCCATCGCCCGAGTCCAAT
CGCGTGAGCGTGCAAGCTAAGCGAGGCTCGTTGGCTACCTTCAAGAAAGG
AATACGTGGAAAGCTCCGTCTCAATGACTCCAATAGTGATACGCCGCGTG
TTGCCAGCCCCGCTGAACCTACCATGCCGGCTCCCGTTGCAAAGCAAAGT
CGAGATAGCCTTTTGGTGGAACAAACCCGTCTGGAGCGCGAATCTCGACG
TTTGAAACGAAAGCCATATCGTTGTGATGAAGATGACAAACGTTTATTGG
AGATTTCCGGTGCTCTATCACGCATTTCTTCTACGCTGGCGGAAATGCCG
GAGATTGCCTCCCCCCGAAATGAAAAGTTGTACGATGACGACGTCGACGT
GACAAGCCCCCAAAATCGCACCCACATTGAATCTTTGTCGGAAAAGGATG
TCCAAGTTTCCCCCGTCACCGAGGATGATAACAACAGGCCGTTTGATTCC
CAATCAGTGGACTCGCCAGCTCAGTCACGGCCAAACAAGAGTTCACATCC
GAAGAGGAAGAAAGGATGGGGTGCCTTGGAGGCCGGTTTTGCTTCATTCA
AGGCATTAGGACGTACAGTGCGACATGCTGCTGCAGGCTCACGAACTGAA
TCGAAACAGGAAGCATCTAGAACAAGAGAAAGAACAATATCCGCTCCCAA
CGCACAGGACTTGTTTTCTGAAACTGTAAATCGTGTGCATGAGAGAGGAG
AAAGGCTTGAAGGAGTCGCAGAAGAATCGGAGCATATGGCCAACGATGCC
AATGACATGTTTGCGGCCGCGAGGGCATTGAATCAACGACAGAAGGGCGG
GTTCTTTTCATAG
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Coding sequence (CDS) from alignment at tig00000075_pilon:401396..402658-

>Ggra9214.t1 ID=Ggra9214.t1|Name=Ggra9214.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1263bp|location=Sequence derived from alignment at tig00000075_pilon:401396..402658- (Gracilaria gracilis GNS1m male)
ATGTCCGACGCGGTGAATGCGGCTTATGAGCAATCGGAACTGCTTCGCCA
GCAATGGGAGCGACTCAAGGCTGATATGTTGGCCATAGACCCTTCGCTGA
CTGATGCGGCTGCGCGACGCGACGAGCTACGCGCCCAGATGGATCAGGTT
ATGAATCAGTTGTCTTCGGTCGTTAGTGAGACCCGTCGCTTGGTTCCTAA
TGCCAACACTGCCGATGAGGATGAGCCTATAATGGAGGCGCGTCCGGTGC
AATATTCTGCCAATCATAGACATGTTATATATCGCACATACGAGTCTTCT
GATGAAAGTTCCGACGGAGAGCACTCACTTTCTGTGCCGGAGGAACCGCC
GAAACTGCTGCAAAAACCACCAGTGCAACCAGTGCGCATCACCTCGCCGC
CAACGTCACCAATTGCAGATGTAACCCTCATTCCATCGCCCGAGTCCAAT
CGCGTGAGCGTGCAAGCTAAGCGAGGCTCGTTGGCTACCTTCAAGAAAGG
AATACGTGGAAAGCTCCGTCTCAATGACTCCAATAGTGATACGCCGCGTG
TTGCCAGCCCCGCTGAACCTACCATGCCGGCTCCCGTTGCAAAGCAAAGT
CGAGATAGCCTTTTGGTGGAACAAACCCGTCTGGAGCGCGAATCTCGACG
TTTGAAACGAAAGCCATATCGTTGTGATGAAGATGACAAACGTTTATTGG
AGATTTCCGGTGCTCTATCACGCATTTCTTCTACGCTGGCGGAAATGCCG
GAGATTGCCTCCCCCCGAAATGAAAAGTTGTACGATGACGACGTCGACGT
GACAAGCCCCCAAAATCGCACCCACATTGAATCTTTGTCGGAAAAGGATG
TCCAAGTTTCCCCCGTCACCGAGGATGATAACAACAGGCCGTTTGATTCC
CAATCAGTGGACTCGCCAGCTCAGTCACGGCCAAACAAGAGTTCACATCC
GAAGAGGAAGAAAGGATGGGGTGCCTTGGAGGCCGGTTTTGCTTCATTCA
AGGCATTAGGACGTACAGTGCGACATGCTGCTGCAGGCTCACGAACTGAA
TCGAAACAGGAAGCATCTAGAACAAGAGAAAGAACAATATCCGCTCCCAA
CGCACAGGACTTGTTTTCTGAAACTGTAAATCGTGTGCATGAGAGAGGAG
AAAGGCTTGAAGGAGTCGCAGAAGAATCGGAGCATATGGCCAACGATGCC
AATGACATGTTTGCGGCCGCGAGGGCATTGAATCAACGACAGAAGGGCGG
GTTCTTTTCATAG
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