Ggra9200.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9200.t1
Unique NameGgra9200.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length472
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:366896..368311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703545.1
PFAMsBranch
Max annot lvl2759|Eukaryota
KEGG koko:K00742,ko:K00771,ko:K02836,ko:K14763,ko:K20891
KEGG ReactionR05925,R06189
KEGG Pathwayko00532,ko00534,ko00601,ko01100,map00532,map00534,map00601,map01100
KEGG ModuleM00057
GOsGO:0000139,GO:0000902,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006029,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009653,GO:0009826,GO:0009987,GO:0010033,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0015012,GO:0015020,GO:0016020,GO:0016043,GO:0016049,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0022008,GO:0030154,GO:0030166,GO:0030201,GO:0031090,GO:0031344,GO:0031345,GO:0031984,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032989,GO:0034097,GO:0034645,GO:0040007,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048589,GO:0048679,GO:0048681,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050650,GO:0050654,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051960,GO:0051961,GO:0060284,GO:0060560,GO:0065007,GO:0070555,GO:0070570,GO:0070571,GO:0071704,GO:0071840,GO:0080134,GO:0080135,GO:0098588,GO:0098791,GO:0120035,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903034,GO:1903035,GO:2000026
Evalue4.92e-64
EggNOG OGsKOG0799@1|root,KOG0799@2759|Eukaryota
EC2.4.1.150,2.4.2.26
Descriptionacetylglucosaminyltransferase activity
COG categoryO
CAZyGT14
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko03009,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9200Ggra9200Gracilaria gracilis GNS1m malegenetig00000075_pilon 366896..368311 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9200.t1.stop1Ggra9200.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 366896..366898 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9200.t1.CDS1Ggra9200.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 366896..368311 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9200.t1.exon1Ggra9200.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 366896..368311 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9200.t1.start1Ggra9200.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 368309..368311 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9200.t1Ggra9200.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 366896..368311 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9200.t1 ID=Ggra9200.t1|Name=Ggra9200.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=472bp
MNVPGRQLPNAKPRPVKRRGLFRQTRRMAHSLCFKCRGGRQVSILVICTL
LIFVLVFHRRLQNYARLSLLVTSPFFESSLNHPDSAFNLQACEKKYDAAW
SLVHGSKSPQQIKDSVQIAYFVQVGNDSVALLERLFARIHNPRNVYIVHI
DGKVDGELRMGFARLVTSTKAYKENVHIMDSEMVTYKAITMVLNTIAAMT
LALEKHKTWDYFINLSGADYPLVSVEKQARLLARPQTPIGKLNFVSFFPK
KEWLPYNFRIRKLYWDPGIARNSSPSAHMYYVKGHKYNPLEPYRSFVFTK
AEAWVILSRPFVKFLIRSSFAKRMLVYHMHVLSVPEHYFMNVMYNHPLWR
QTIVHGAFRKVVWYHNGRRSGQHPYVLDKGHSPTAFWSDLEHTSSFFARK
FSQPNSSLMDKIDAELSGIGLNASQAGFQKYARKRRDFYRNVVEHFDHLT
EETMSQQKHHWPSSFKAKSKL*
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spliced messenger RNA

>Ggra9200.t1 ID=Ggra9200.t1|Name=Ggra9200.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1416bp|location=Sequence derived from alignment at tig00000075_pilon:366896..368311- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGTACCTGGTCGGCAGCTCCCGAATGCGAAACCTCGCCCCGTCAA
GCGAAGAGGCTTGTTCCGACAAACTCGTCGCATGGCTCACAGCTTATGTT
TCAAGTGTCGAGGCGGTCGCCAGGTCTCAATATTGGTGATCTGCACACTC
CTCATCTTCGTCCTCGTTTTCCATCGCAGACTTCAGAATTATGCCAGGCT
TTCTCTTCTAGTAACTTCTCCATTTTTCGAATCCTCTCTGAATCATCCAG
ATTCAGCGTTTAATCTCCAGGCTTGTGAAAAGAAGTACGATGCGGCGTGG
TCTCTTGTACACGGCAGCAAGTCTCCACAACAGATCAAAGACTCTGTTCA
GATTGCATATTTTGTTCAAGTTGGAAATGATTCAGTTGCTTTACTGGAGC
GATTATTTGCCAGAATACACAACCCGCGCAACGTTTACATAGTTCACATA
GACGGCAAAGTTGACGGGGAGCTGCGAATGGGTTTTGCACGCCTTGTCAC
CAGCACCAAAGCCTACAAGGAAAACGTGCATATCATGGACAGTGAAATGG
TGACGTATAAGGCGATAACGATGGTGTTGAACACCATAGCAGCGATGACC
CTTGCTCTGGAAAAGCACAAGACATGGGATTATTTCATCAACCTCAGCGG
TGCTGATTACCCGTTAGTTTCAGTTGAGAAGCAGGCACGCCTGCTTGCCA
GACCGCAAACCCCAATTGGCAAGTTAAACTTCGTTTCTTTCTTTCCGAAG
AAAGAATGGCTTCCATACAATTTCCGCATTCGAAAGTTATACTGGGATCC
AGGAATCGCTCGAAATAGTTCTCCCAGTGCTCATATGTATTACGTCAAAG
GACACAAGTACAATCCTCTTGAGCCGTACAGATCATTCGTGTTTACGAAA
GCAGAAGCATGGGTAATACTGTCTCGGCCGTTTGTGAAGTTTCTGATTCG
CAGCTCTTTTGCCAAGAGAATGCTAGTGTACCATATGCATGTCCTATCGG
TTCCAGAGCATTACTTTATGAACGTTATGTACAATCATCCTCTGTGGCGC
CAAACTATCGTTCACGGTGCGTTTAGAAAAGTTGTGTGGTACCACAATGG
TCGAAGGTCTGGGCAACATCCCTATGTGCTTGACAAAGGCCATTCTCCGA
CCGCCTTTTGGAGTGACCTAGAGCATACAAGTAGTTTCTTCGCTCGTAAG
TTCAGCCAGCCGAACTCGTCATTGATGGATAAAATAGATGCAGAACTTAG
TGGTATTGGATTGAATGCAAGCCAGGCCGGGTTTCAGAAATATGCAAGGA
AACGCCGCGATTTCTATAGGAACGTTGTTGAGCATTTTGATCATCTCACG
GAAGAGACGATGTCGCAACAAAAGCACCACTGGCCTTCGAGTTTCAAAGC
GAAATCAAAACTGTAG
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protein sequence of Ggra9200.t1

>Ggra9200.t1 ID=Ggra9200.t1|Name=Ggra9200.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=472bp
MNVPGRQLPNAKPRPVKRRGLFRQTRRMAHSLCFKCRGGRQVSILVICTL
LIFVLVFHRRLQNYARLSLLVTSPFFESSLNHPDSAFNLQACEKKYDAAW
SLVHGSKSPQQIKDSVQIAYFVQVGNDSVALLERLFARIHNPRNVYIVHI
DGKVDGELRMGFARLVTSTKAYKENVHIMDSEMVTYKAITMVLNTIAAMT
LALEKHKTWDYFINLSGADYPLVSVEKQARLLARPQTPIGKLNFVSFFPK
KEWLPYNFRIRKLYWDPGIARNSSPSAHMYYVKGHKYNPLEPYRSFVFTK
AEAWVILSRPFVKFLIRSSFAKRMLVYHMHVLSVPEHYFMNVMYNHPLWR
QTIVHGAFRKVVWYHNGRRSGQHPYVLDKGHSPTAFWSDLEHTSSFFARK
FSQPNSSLMDKIDAELSGIGLNASQAGFQKYARKRRDFYRNVVEHFDHLT
EETMSQQKHHWPSSFKAKSKL*
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mRNA from alignment at tig00000075_pilon:366896..368311-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9200.t1 ID=Ggra9200.t1|Name=Ggra9200.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1416bp|location=Sequence derived from alignment at tig00000075_pilon:366896..368311- (Gracilaria gracilis GNS1m male)
ATGAATGTACCTGGTCGGCAGCTCCCGAATGCGAAACCTCGCCCCGTCAA
GCGAAGAGGCTTGTTCCGACAAACTCGTCGCATGGCTCACAGCTTATGTT
TCAAGTGTCGAGGCGGTCGCCAGGTCTCAATATTGGTGATCTGCACACTC
CTCATCTTCGTCCTCGTTTTCCATCGCAGACTTCAGAATTATGCCAGGCT
TTCTCTTCTAGTAACTTCTCCATTTTTCGAATCCTCTCTGAATCATCCAG
ATTCAGCGTTTAATCTCCAGGCTTGTGAAAAGAAGTACGATGCGGCGTGG
TCTCTTGTACACGGCAGCAAGTCTCCACAACAGATCAAAGACTCTGTTCA
GATTGCATATTTTGTTCAAGTTGGAAATGATTCAGTTGCTTTACTGGAGC
GATTATTTGCCAGAATACACAACCCGCGCAACGTTTACATAGTTCACATA
GACGGCAAAGTTGACGGGGAGCTGCGAATGGGTTTTGCACGCCTTGTCAC
CAGCACCAAAGCCTACAAGGAAAACGTGCATATCATGGACAGTGAAATGG
TGACGTATAAGGCGATAACGATGGTGTTGAACACCATAGCAGCGATGACC
CTTGCTCTGGAAAAGCACAAGACATGGGATTATTTCATCAACCTCAGCGG
TGCTGATTACCCGTTAGTTTCAGTTGAGAAGCAGGCACGCCTGCTTGCCA
GACCGCAAACCCCAATTGGCAAGTTAAACTTCGTTTCTTTCTTTCCGAAG
AAAGAATGGCTTCCATACAATTTCCGCATTCGAAAGTTATACTGGGATCC
AGGAATCGCTCGAAATAGTTCTCCCAGTGCTCATATGTATTACGTCAAAG
GACACAAGTACAATCCTCTTGAGCCGTACAGATCATTCGTGTTTACGAAA
GCAGAAGCATGGGTAATACTGTCTCGGCCGTTTGTGAAGTTTCTGATTCG
CAGCTCTTTTGCCAAGAGAATGCTAGTGTACCATATGCATGTCCTATCGG
TTCCAGAGCATTACTTTATGAACGTTATGTACAATCATCCTCTGTGGCGC
CAAACTATCGTTCACGGTGCGTTTAGAAAAGTTGTGTGGTACCACAATGG
TCGAAGGTCTGGGCAACATCCCTATGTGCTTGACAAAGGCCATTCTCCGA
CCGCCTTTTGGAGTGACCTAGAGCATACAAGTAGTTTCTTCGCTCGTAAG
TTCAGCCAGCCGAACTCGTCATTGATGGATAAAATAGATGCAGAACTTAG
TGGTATTGGATTGAATGCAAGCCAGGCCGGGTTTCAGAAATATGCAAGGA
AACGCCGCGATTTCTATAGGAACGTTGTTGAGCATTTTGATCATCTCACG
GAAGAGACGATGTCGCAACAAAAGCACCACTGGCCTTCGAGTTTCAAAGC
GAAATCAAAACTGTAG
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Coding sequence (CDS) from alignment at tig00000075_pilon:366896..368311-

>Ggra9200.t1 ID=Ggra9200.t1|Name=Ggra9200.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1416bp|location=Sequence derived from alignment at tig00000075_pilon:366896..368311- (Gracilaria gracilis GNS1m male)
ATGAATGTACCTGGTCGGCAGCTCCCGAATGCGAAACCTCGCCCCGTCAA
GCGAAGAGGCTTGTTCCGACAAACTCGTCGCATGGCTCACAGCTTATGTT
TCAAGTGTCGAGGCGGTCGCCAGGTCTCAATATTGGTGATCTGCACACTC
CTCATCTTCGTCCTCGTTTTCCATCGCAGACTTCAGAATTATGCCAGGCT
TTCTCTTCTAGTAACTTCTCCATTTTTCGAATCCTCTCTGAATCATCCAG
ATTCAGCGTTTAATCTCCAGGCTTGTGAAAAGAAGTACGATGCGGCGTGG
TCTCTTGTACACGGCAGCAAGTCTCCACAACAGATCAAAGACTCTGTTCA
GATTGCATATTTTGTTCAAGTTGGAAATGATTCAGTTGCTTTACTGGAGC
GATTATTTGCCAGAATACACAACCCGCGCAACGTTTACATAGTTCACATA
GACGGCAAAGTTGACGGGGAGCTGCGAATGGGTTTTGCACGCCTTGTCAC
CAGCACCAAAGCCTACAAGGAAAACGTGCATATCATGGACAGTGAAATGG
TGACGTATAAGGCGATAACGATGGTGTTGAACACCATAGCAGCGATGACC
CTTGCTCTGGAAAAGCACAAGACATGGGATTATTTCATCAACCTCAGCGG
TGCTGATTACCCGTTAGTTTCAGTTGAGAAGCAGGCACGCCTGCTTGCCA
GACCGCAAACCCCAATTGGCAAGTTAAACTTCGTTTCTTTCTTTCCGAAG
AAAGAATGGCTTCCATACAATTTCCGCATTCGAAAGTTATACTGGGATCC
AGGAATCGCTCGAAATAGTTCTCCCAGTGCTCATATGTATTACGTCAAAG
GACACAAGTACAATCCTCTTGAGCCGTACAGATCATTCGTGTTTACGAAA
GCAGAAGCATGGGTAATACTGTCTCGGCCGTTTGTGAAGTTTCTGATTCG
CAGCTCTTTTGCCAAGAGAATGCTAGTGTACCATATGCATGTCCTATCGG
TTCCAGAGCATTACTTTATGAACGTTATGTACAATCATCCTCTGTGGCGC
CAAACTATCGTTCACGGTGCGTTTAGAAAAGTTGTGTGGTACCACAATGG
TCGAAGGTCTGGGCAACATCCCTATGTGCTTGACAAAGGCCATTCTCCGA
CCGCCTTTTGGAGTGACCTAGAGCATACAAGTAGTTTCTTCGCTCGTAAG
TTCAGCCAGCCGAACTCGTCATTGATGGATAAAATAGATGCAGAACTTAG
TGGTATTGGATTGAATGCAAGCCAGGCCGGGTTTCAGAAATATGCAAGGA
AACGCCGCGATTTCTATAGGAACGTTGTTGAGCATTTTGATCATCTCACG
GAAGAGACGATGTCGCAACAAAAGCACCACTGGCCTTCGAGTTTCAAAGC
GAAATCAAAACTGTAG
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