Ggra9188.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9188.t1
Unique Name	Ggra9188.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	622

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000075_pilon	contig	tig00000075_pilon:335896..337761 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7230.FBpp0168539
Preferred name	CSGALNACT1
PFAMs	CHGN
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K00746
KEGG Reaction	R05929
KEGG Pathway	ko00532,ko01100,map00532,map01100
KEGG Module	M00058
GOs	GO:0000139,GO:0000271,GO:0001501,GO:0001503,GO:0001958,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005975,GO:0005976,GO:0006022,GO:0006023,GO:0006024,GO:0006029,GO:0006040,GO:0006082,GO:0006139,GO:0006725,GO:0006790,GO:0006793,GO:0006807,GO:0006950,GO:0007275,GO:0007399,GO:0008037,GO:0008150,GO:0008152,GO:0008194,GO:0008283,GO:0008376,GO:0008955,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009611,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0012505,GO:0015012,GO:0015014,GO:0015020,GO:0016020,GO:0016021,GO:0016043,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0019276,GO:0019538,GO:0019752,GO:0030166,GO:0030173,GO:0030198,GO:0030201,GO:0030202,GO:0030203,GO:0030204,GO:0030206,GO:0030210,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031984,GO:0032501,GO:0032502,GO:0033692,GO:0034637,GO:0034641,GO:0034645,GO:0036075,GO:0042060,GO:0043062,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046398,GO:0046483,GO:0046872,GO:0047237,GO:0047238,GO:0048513,GO:0048705,GO:0048731,GO:0048856,GO:0050650,GO:0050651,GO:0050652,GO:0050653,GO:0050654,GO:0050655,GO:0050896,GO:0051216,GO:0055086,GO:0060348,GO:0060349,GO:0060350,GO:0061448,GO:0071704,GO:0071840,GO:0098588,GO:0098791,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1903510
Evalue	1.1e-28
EggNOG OGs	KOG3588@1\|root,KOG3588@2759\|Eukaryota,38DJN@33154\|Opisthokonta,3BAVK@33208\|Metazoa,3CYIJ@33213\|Bilateria,41WHQ@6656\|Arthropoda,3SG8J@50557\|Insecta,44Z6C@7147\|Diptera,45PJ9@7214\|Drosophilidae
EC	2.4.1.174,2.4.1.175
Description	Acetylgalactosaminyltransferase activity
COG category	G
CAZy	GT7
BRITE	ko00000,ko00001,ko00002,ko01000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9188	Ggra9188	Gracilaria gracilis GNS1m male	gene	tig00000075_pilon 335896..337761 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9188.t1.start1	Ggra9188.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000075_pilon 335896..335898 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9188.t1.CDS1	Ggra9188.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000075_pilon 335896..337761 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9188.t1.exon1	Ggra9188.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000075_pilon 335896..337761 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9188.t1.stop1	Ggra9188.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000075_pilon 337759..337761 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9188.t1	Ggra9188.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000075_pilon 335896..337761 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000075_pilon:335896..337761+
coding sequence from alignment at tig00000075_pilon:335896..337761+

mRNA sequence

>Ggra9188.t1 ID=Ggra9188.t1|Name=Ggra9188.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=622bp
MPKANRITSIGTDSPKRASNQRQRWFKQLQFILGPRLATRRNLLLLIALL
QASMIIILSRVLAAKTHSIEELNSSLTKSPWTQYGTGEETFGTPQKGSDI
ELTPVDTSKTQSGSWIRRRFGLFGTPQACIPQPCSIDHWSPLEEACFYRD
DHVKDRRGHNATVWSLIQNEWYYTETSDFACPAVVCRKQWLREFNVTGNI
AHTVLDNHYKNDTEWELVNVVIGNTYVRVNPFWGLEYKLNGFVSLKKQGD
GDAETSTVANKKASITLRRGFTQKFCDVALDDNILPDDDPIYVIVPYTGR
PDMLRKFFVNVRGLLDEGVNVRVVLSIFGGELHVQGAQLLLNQLDLNITV
GSLSDGNIIQIVESQGDIRGNFSRSEALSEGTNHVPPEGLIFFCDVDVEI
RKEFFDNCRYNTEKEHQVYYPLLYSLYPYGMTISKEHGYWRSGAYGMLCV
YNRDFKNMNAWSTERKRKAYMGWGGEDVALYSEFANVWQYTIFRSVEPNL
LHRWHPQVCDFNINIAACLNTVFENLGTQTFLASVISNHGVDIRKETYIP
VPINFEEYKNDTGGGIHRKFEIPLPESGSDGARVKQLESFFITGIQKSKR
DEMLRYLSEKAVEVLEKATAE*

spliced messenger RNA

>Ggra9188.t1 ID=Ggra9188.t1|Name=Ggra9188.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1866bp|location=Sequence derived from alignment at tig00000075_pilon:335896..337761+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGAAGGCAAATAGAATTACGTCGATTGGCACCGACTCTCCTAAACG
AGCCTCAAATCAACGTCAGCGATGGTTCAAACAACTACAGTTTATTCTGG
GACCAAGGCTAGCAACCCGAAGAAACCTTTTGCTGCTCATTGCTTTGTTA
CAGGCTTCGATGATCATTATTCTTTCAAGGGTTCTGGCTGCTAAGACTCA
CTCTATTGAAGAGCTTAATTCGTCTCTTACTAAATCTCCATGGACTCAGT
ACGGCACAGGGGAAGAAACCTTTGGGACTCCTCAGAAAGGAAGTGATATC
GAGTTAACACCTGTAGATACATCGAAAACACAATCTGGAAGTTGGATCCG
AAGGCGTTTTGGTCTTTTTGGGACTCCGCAGGCATGCATACCTCAACCAT
GCTCGATCGATCATTGGTCCCCCTTAGAGGAGGCCTGCTTTTACCGTGAT
GATCACGTCAAAGACCGTCGTGGCCACAATGCTACGGTCTGGAGTCTGAT
ACAAAATGAATGGTACTATACTGAGACGAGCGATTTCGCGTGCCCTGCTG
TCGTTTGTCGGAAACAATGGCTGAGAGAGTTCAATGTCACGGGAAATATC
GCTCACACCGTACTTGATAACCATTACAAGAATGATACGGAGTGGGAGCT
CGTTAATGTTGTCATTGGAAATACGTACGTGCGTGTTAATCCCTTTTGGG
GACTGGAGTACAAACTGAATGGTTTTGTATCTCTTAAGAAACAGGGCGAT
GGTGATGCTGAGACTTCAACAGTGGCTAATAAGAAAGCATCAATAACTTT
GCGTCGGGGTTTTACGCAGAAGTTTTGTGATGTTGCTCTAGATGACAATA
TTCTACCCGATGACGATCCCATTTATGTTATCGTGCCGTACACAGGGCGT
CCTGACATGCTTCGGAAATTCTTTGTCAATGTGAGAGGTTTGCTCGATGA
AGGAGTCAATGTGCGAGTTGTATTATCGATTTTCGGTGGTGAACTCCATG
TCCAAGGGGCCCAACTTCTCCTAAATCAACTTGATCTTAATATAACTGTT
GGAAGTTTGTCCGACGGAAACATCATTCAGATAGTCGAAAGCCAAGGGGA
TATAAGAGGTAACTTCTCTAGGTCTGAAGCCCTCTCTGAAGGAACGAACC
ATGTTCCACCTGAGGGCTTAATCTTCTTTTGCGATGTTGACGTTGAAATT
CGCAAAGAGTTCTTTGACAACTGCAGGTACAACACGGAGAAAGAACACCA
GGTATACTACCCACTTTTGTACAGCCTTTACCCATACGGGATGACAATAT
CCAAAGAACACGGCTATTGGCGAAGCGGCGCATACGGAATGCTATGTGTG
TATAATAGGGATTTCAAAAATATGAACGCATGGAGTACCGAACGCAAACG
AAAGGCTTATATGGGATGGGGCGGGGAAGACGTCGCCTTGTATAGCGAGT
TTGCGAACGTTTGGCAGTATACTATATTTCGATCAGTAGAGCCGAACCTG
TTACACCGATGGCATCCGCAGGTATGTGACTTCAATATCAACATAGCAGC
ATGCCTCAACACAGTTTTCGAAAATCTTGGAACCCAAACTTTCTTAGCTT
CAGTGATATCTAATCACGGGGTGGATATCCGGAAAGAAACATACATTCCT
GTACCTATCAATTTTGAGGAATACAAGAATGACACAGGTGGAGGTATTCA
CCGAAAGTTCGAGATTCCACTTCCTGAGTCTGGGTCAGATGGTGCAAGAG
TGAAACAATTAGAGTCTTTCTTCATTACTGGCATCCAAAAATCAAAACGA
GACGAGATGCTTCGATATCTTTCGGAAAAGGCAGTGGAGGTTCTTGAGAA
GGCAACGGCAGAATGA

protein sequence of Ggra9188.t1

>Ggra9188.t1 ID=Ggra9188.t1|Name=Ggra9188.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=622bp
MPKANRITSIGTDSPKRASNQRQRWFKQLQFILGPRLATRRNLLLLIALL
QASMIIILSRVLAAKTHSIEELNSSLTKSPWTQYGTGEETFGTPQKGSDI
ELTPVDTSKTQSGSWIRRRFGLFGTPQACIPQPCSIDHWSPLEEACFYRD
DHVKDRRGHNATVWSLIQNEWYYTETSDFACPAVVCRKQWLREFNVTGNI
AHTVLDNHYKNDTEWELVNVVIGNTYVRVNPFWGLEYKLNGFVSLKKQGD
GDAETSTVANKKASITLRRGFTQKFCDVALDDNILPDDDPIYVIVPYTGR
PDMLRKFFVNVRGLLDEGVNVRVVLSIFGGELHVQGAQLLLNQLDLNITV
GSLSDGNIIQIVESQGDIRGNFSRSEALSEGTNHVPPEGLIFFCDVDVEI
RKEFFDNCRYNTEKEHQVYYPLLYSLYPYGMTISKEHGYWRSGAYGMLCV
YNRDFKNMNAWSTERKRKAYMGWGGEDVALYSEFANVWQYTIFRSVEPNL
LHRWHPQVCDFNINIAACLNTVFENLGTQTFLASVISNHGVDIRKETYIP
VPINFEEYKNDTGGGIHRKFEIPLPESGSDGARVKQLESFFITGIQKSKR
DEMLRYLSEKAVEVLEKATAE*

mRNA from alignment at tig00000075_pilon:335896..337761+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9188.t1 ID=Ggra9188.t1|Name=Ggra9188.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1866bp|location=Sequence derived from alignment at tig00000075_pilon:335896..337761+ (Gracilaria gracilis GNS1m male)
ATGCCGAAGGCAAATAGAATTACGTCGATTGGCACCGACTCTCCTAAACG
AGCCTCAAATCAACGTCAGCGATGGTTCAAACAACTACAGTTTATTCTGG
GACCAAGGCTAGCAACCCGAAGAAACCTTTTGCTGCTCATTGCTTTGTTA
CAGGCTTCGATGATCATTATTCTTTCAAGGGTTCTGGCTGCTAAGACTCA
CTCTATTGAAGAGCTTAATTCGTCTCTTACTAAATCTCCATGGACTCAGT
ACGGCACAGGGGAAGAAACCTTTGGGACTCCTCAGAAAGGAAGTGATATC
GAGTTAACACCTGTAGATACATCGAAAACACAATCTGGAAGTTGGATCCG
AAGGCGTTTTGGTCTTTTTGGGACTCCGCAGGCATGCATACCTCAACCAT
GCTCGATCGATCATTGGTCCCCCTTAGAGGAGGCCTGCTTTTACCGTGAT
GATCACGTCAAAGACCGTCGTGGCCACAATGCTACGGTCTGGAGTCTGAT
ACAAAATGAATGGTACTATACTGAGACGAGCGATTTCGCGTGCCCTGCTG
TCGTTTGTCGGAAACAATGGCTGAGAGAGTTCAATGTCACGGGAAATATC
GCTCACACCGTACTTGATAACCATTACAAGAATGATACGGAGTGGGAGCT
CGTTAATGTTGTCATTGGAAATACGTACGTGCGTGTTAATCCCTTTTGGG
GACTGGAGTACAAACTGAATGGTTTTGTATCTCTTAAGAAACAGGGCGAT
GGTGATGCTGAGACTTCAACAGTGGCTAATAAGAAAGCATCAATAACTTT
GCGTCGGGGTTTTACGCAGAAGTTTTGTGATGTTGCTCTAGATGACAATA
TTCTACCCGATGACGATCCCATTTATGTTATCGTGCCGTACACAGGGCGT
CCTGACATGCTTCGGAAATTCTTTGTCAATGTGAGAGGTTTGCTCGATGA
AGGAGTCAATGTGCGAGTTGTATTATCGATTTTCGGTGGTGAACTCCATG
TCCAAGGGGCCCAACTTCTCCTAAATCAACTTGATCTTAATATAACTGTT
GGAAGTTTGTCCGACGGAAACATCATTCAGATAGTCGAAAGCCAAGGGGA
TATAAGAGGTAACTTCTCTAGGTCTGAAGCCCTCTCTGAAGGAACGAACC
ATGTTCCACCTGAGGGCTTAATCTTCTTTTGCGATGTTGACGTTGAAATT
CGCAAAGAGTTCTTTGACAACTGCAGGTACAACACGGAGAAAGAACACCA
GGTATACTACCCACTTTTGTACAGCCTTTACCCATACGGGATGACAATAT
CCAAAGAACACGGCTATTGGCGAAGCGGCGCATACGGAATGCTATGTGTG
TATAATAGGGATTTCAAAAATATGAACGCATGGAGTACCGAACGCAAACG
AAAGGCTTATATGGGATGGGGCGGGGAAGACGTCGCCTTGTATAGCGAGT
TTGCGAACGTTTGGCAGTATACTATATTTCGATCAGTAGAGCCGAACCTG
TTACACCGATGGCATCCGCAGGTATGTGACTTCAATATCAACATAGCAGC
ATGCCTCAACACAGTTTTCGAAAATCTTGGAACCCAAACTTTCTTAGCTT
CAGTGATATCTAATCACGGGGTGGATATCCGGAAAGAAACATACATTCCT
GTACCTATCAATTTTGAGGAATACAAGAATGACACAGGTGGAGGTATTCA
CCGAAAGTTCGAGATTCCACTTCCTGAGTCTGGGTCAGATGGTGCAAGAG
TGAAACAATTAGAGTCTTTCTTCATTACTGGCATCCAAAAATCAAAACGA
GACGAGATGCTTCGATATCTTTCGGAAAAGGCAGTGGAGGTTCTTGAGAA
GGCAACGGCAGAATGA

Coding sequence (CDS) from alignment at tig00000075_pilon:335896..337761+

>Ggra9188.t1 ID=Ggra9188.t1|Name=Ggra9188.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1866bp|location=Sequence derived from alignment at tig00000075_pilon:335896..337761+ (Gracilaria gracilis GNS1m male)
ATGCCGAAGGCAAATAGAATTACGTCGATTGGCACCGACTCTCCTAAACG
AGCCTCAAATCAACGTCAGCGATGGTTCAAACAACTACAGTTTATTCTGG
GACCAAGGCTAGCAACCCGAAGAAACCTTTTGCTGCTCATTGCTTTGTTA
CAGGCTTCGATGATCATTATTCTTTCAAGGGTTCTGGCTGCTAAGACTCA
CTCTATTGAAGAGCTTAATTCGTCTCTTACTAAATCTCCATGGACTCAGT
ACGGCACAGGGGAAGAAACCTTTGGGACTCCTCAGAAAGGAAGTGATATC
GAGTTAACACCTGTAGATACATCGAAAACACAATCTGGAAGTTGGATCCG
AAGGCGTTTTGGTCTTTTTGGGACTCCGCAGGCATGCATACCTCAACCAT
GCTCGATCGATCATTGGTCCCCCTTAGAGGAGGCCTGCTTTTACCGTGAT
GATCACGTCAAAGACCGTCGTGGCCACAATGCTACGGTCTGGAGTCTGAT
ACAAAATGAATGGTACTATACTGAGACGAGCGATTTCGCGTGCCCTGCTG
TCGTTTGTCGGAAACAATGGCTGAGAGAGTTCAATGTCACGGGAAATATC
GCTCACACCGTACTTGATAACCATTACAAGAATGATACGGAGTGGGAGCT
CGTTAATGTTGTCATTGGAAATACGTACGTGCGTGTTAATCCCTTTTGGG
GACTGGAGTACAAACTGAATGGTTTTGTATCTCTTAAGAAACAGGGCGAT
GGTGATGCTGAGACTTCAACAGTGGCTAATAAGAAAGCATCAATAACTTT
GCGTCGGGGTTTTACGCAGAAGTTTTGTGATGTTGCTCTAGATGACAATA
TTCTACCCGATGACGATCCCATTTATGTTATCGTGCCGTACACAGGGCGT
CCTGACATGCTTCGGAAATTCTTTGTCAATGTGAGAGGTTTGCTCGATGA
AGGAGTCAATGTGCGAGTTGTATTATCGATTTTCGGTGGTGAACTCCATG
TCCAAGGGGCCCAACTTCTCCTAAATCAACTTGATCTTAATATAACTGTT
GGAAGTTTGTCCGACGGAAACATCATTCAGATAGTCGAAAGCCAAGGGGA
TATAAGAGGTAACTTCTCTAGGTCTGAAGCCCTCTCTGAAGGAACGAACC
ATGTTCCACCTGAGGGCTTAATCTTCTTTTGCGATGTTGACGTTGAAATT
CGCAAAGAGTTCTTTGACAACTGCAGGTACAACACGGAGAAAGAACACCA
GGTATACTACCCACTTTTGTACAGCCTTTACCCATACGGGATGACAATAT
CCAAAGAACACGGCTATTGGCGAAGCGGCGCATACGGAATGCTATGTGTG
TATAATAGGGATTTCAAAAATATGAACGCATGGAGTACCGAACGCAAACG
AAAGGCTTATATGGGATGGGGCGGGGAAGACGTCGCCTTGTATAGCGAGT
TTGCGAACGTTTGGCAGTATACTATATTTCGATCAGTAGAGCCGAACCTG
TTACACCGATGGCATCCGCAGGTATGTGACTTCAATATCAACATAGCAGC
ATGCCTCAACACAGTTTTCGAAAATCTTGGAACCCAAACTTTCTTAGCTT
CAGTGATATCTAATCACGGGGTGGATATCCGGAAAGAAACATACATTCCT
GTACCTATCAATTTTGAGGAATACAAGAATGACACAGGTGGAGGTATTCA
CCGAAAGTTCGAGATTCCACTTCCTGAGTCTGGGTCAGATGGTGCAAGAG
TGAAACAATTAGAGTCTTTCTTCATTACTGGCATCCAAAAATCAAAACGA
GACGAGATGCTTCGATATCTTTCGGAAAAGGCAGTGGAGGTTCTTGAGAA
GGCAACGGCAGAATGA