Ggra9179.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9179.t1
Unique NameGgra9179.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length318
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:311741..312694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog983917.RGE_37240
Preferred namemenB
PFAMsECH_1
Max annot lvl28216|Betaproteobacteria
KEGG rclassRC01429,RC01923
KEGG koko:K01661,ko:K07536
KEGG ReactionR05592,R07263
KEGG Pathwayko00130,ko00362,ko01100,ko01110,ko01120,ko01220,map00130,map00362,map01100,map01110,map01120,map01220
KEGG ModuleM00116,M00540
Evalue1.03e-130
EggNOG OGsCOG0447@1|root,COG0447@2|Bacteria,1QTZ2@1224|Proteobacteria,2VJ36@28216|Betaproteobacteria,1KKKJ@119065|unclassified Burkholderiales
EC4.1.3.36
DescriptionConverts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9179Ggra9179Gracilaria gracilis GNS1m malegenetig00000075_pilon 311741..312694 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9179.t1.start1Ggra9179.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 311741..311743 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9179.t1.CDS1Ggra9179.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 311741..312694 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9179.t1.exon1Ggra9179.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 311741..312694 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9179.t1.stop1Ggra9179.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 312692..312694 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9179.t1Ggra9179.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 311741..312694 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9179.t1 ID=Ggra9179.t1|Name=Ggra9179.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=318bp
MPSTQQLQAKTSPILEQSTPIIRSACSWQTIRIDSIPQLHDIRFETSPEG
IAKVTIARPHVHNAFRPRTLLELEHAFRYVRDAPSIRAVILTGEGHRAFC
SGGDQSARGHGGYVGSDGIPRLAVLDLHIMMRRLPKVVIAMVAGYAIGGG
HILHMVCDLTIAADNARFGQTGPRVGSFDGGYGSSYMARIIGQKKAREIW
FLCRQYDAEESLKMGLVNAVVPLQDLEVETVKWCREVLEKSPTAIACLKA
ALNADGDGHAGLSQLAGEATRLFYQSDEGKEGKNAFLEKRKPRFGRFSES
NQDTDCAEELQPPRARL*
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spliced messenger RNA

>Ggra9179.t1 ID=Ggra9179.t1|Name=Ggra9179.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=954bp|location=Sequence derived from alignment at tig00000075_pilon:311741..312694+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCTCTACTCAACAATTGCAAGCTAAAACATCCCCAATTCTAGAACA
ATCGACGCCTATAATCCGGTCGGCATGTTCATGGCAAACCATACGAATCG
ATTCAATCCCTCAACTGCATGACATACGATTTGAAACGTCCCCTGAGGGC
ATTGCGAAGGTGACTATTGCTAGACCCCATGTCCACAATGCCTTTCGCCC
GCGTACGTTGCTGGAATTGGAGCACGCCTTCCGATATGTAAGAGATGCGC
CCTCAATCCGAGCAGTTATACTCACTGGTGAGGGGCACCGCGCATTCTGT
TCTGGTGGAGATCAATCTGCTCGAGGTCATGGAGGATACGTAGGATCGGA
CGGTATTCCTCGCTTAGCAGTGCTGGACTTACACATCATGATGCGCCGGT
TGCCAAAAGTGGTGATTGCTATGGTAGCTGGATATGCTATAGGTGGTGGC
CATATTTTACACATGGTGTGCGATTTGACAATAGCGGCAGATAACGCTCG
TTTCGGACAAACTGGTCCACGGGTTGGCAGTTTTGATGGCGGGTACGGCA
GTTCGTACATGGCACGCATCATCGGCCAGAAGAAGGCCCGTGAGATATGG
TTCTTGTGTCGGCAGTATGACGCCGAAGAATCTTTAAAAATGGGATTAGT
CAACGCTGTTGTGCCATTACAAGACCTAGAAGTAGAGACAGTCAAATGGT
GTCGGGAAGTTCTAGAAAAGAGTCCAACTGCAATTGCATGTTTGAAGGCT
GCTCTAAACGCCGACGGGGATGGACATGCGGGCTTGAGCCAATTAGCAGG
TGAAGCAACCCGGCTCTTCTACCAAAGTGACGAAGGAAAGGAAGGAAAGA
ATGCTTTCTTAGAGAAGCGTAAGCCTCGTTTCGGGAGGTTTTCTGAAAGT
AACCAAGATACCGATTGCGCAGAAGAATTACAACCGCCTCGCGCTCGTCT
ATGA
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protein sequence of Ggra9179.t1

>Ggra9179.t1 ID=Ggra9179.t1|Name=Ggra9179.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=318bp
MPSTQQLQAKTSPILEQSTPIIRSACSWQTIRIDSIPQLHDIRFETSPEG
IAKVTIARPHVHNAFRPRTLLELEHAFRYVRDAPSIRAVILTGEGHRAFC
SGGDQSARGHGGYVGSDGIPRLAVLDLHIMMRRLPKVVIAMVAGYAIGGG
HILHMVCDLTIAADNARFGQTGPRVGSFDGGYGSSYMARIIGQKKAREIW
FLCRQYDAEESLKMGLVNAVVPLQDLEVETVKWCREVLEKSPTAIACLKA
ALNADGDGHAGLSQLAGEATRLFYQSDEGKEGKNAFLEKRKPRFGRFSES
NQDTDCAEELQPPRARL*
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mRNA from alignment at tig00000075_pilon:311741..312694+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9179.t1 ID=Ggra9179.t1|Name=Ggra9179.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=954bp|location=Sequence derived from alignment at tig00000075_pilon:311741..312694+ (Gracilaria gracilis GNS1m male)
ATGCCCTCTACTCAACAATTGCAAGCTAAAACATCCCCAATTCTAGAACA
ATCGACGCCTATAATCCGGTCGGCATGTTCATGGCAAACCATACGAATCG
ATTCAATCCCTCAACTGCATGACATACGATTTGAAACGTCCCCTGAGGGC
ATTGCGAAGGTGACTATTGCTAGACCCCATGTCCACAATGCCTTTCGCCC
GCGTACGTTGCTGGAATTGGAGCACGCCTTCCGATATGTAAGAGATGCGC
CCTCAATCCGAGCAGTTATACTCACTGGTGAGGGGCACCGCGCATTCTGT
TCTGGTGGAGATCAATCTGCTCGAGGTCATGGAGGATACGTAGGATCGGA
CGGTATTCCTCGCTTAGCAGTGCTGGACTTACACATCATGATGCGCCGGT
TGCCAAAAGTGGTGATTGCTATGGTAGCTGGATATGCTATAGGTGGTGGC
CATATTTTACACATGGTGTGCGATTTGACAATAGCGGCAGATAACGCTCG
TTTCGGACAAACTGGTCCACGGGTTGGCAGTTTTGATGGCGGGTACGGCA
GTTCGTACATGGCACGCATCATCGGCCAGAAGAAGGCCCGTGAGATATGG
TTCTTGTGTCGGCAGTATGACGCCGAAGAATCTTTAAAAATGGGATTAGT
CAACGCTGTTGTGCCATTACAAGACCTAGAAGTAGAGACAGTCAAATGGT
GTCGGGAAGTTCTAGAAAAGAGTCCAACTGCAATTGCATGTTTGAAGGCT
GCTCTAAACGCCGACGGGGATGGACATGCGGGCTTGAGCCAATTAGCAGG
TGAAGCAACCCGGCTCTTCTACCAAAGTGACGAAGGAAAGGAAGGAAAGA
ATGCTTTCTTAGAGAAGCGTAAGCCTCGTTTCGGGAGGTTTTCTGAAAGT
AACCAAGATACCGATTGCGCAGAAGAATTACAACCGCCTCGCGCTCGTCT
ATGA
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Coding sequence (CDS) from alignment at tig00000075_pilon:311741..312694+

>Ggra9179.t1 ID=Ggra9179.t1|Name=Ggra9179.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=954bp|location=Sequence derived from alignment at tig00000075_pilon:311741..312694+ (Gracilaria gracilis GNS1m male)
ATGCCCTCTACTCAACAATTGCAAGCTAAAACATCCCCAATTCTAGAACA
ATCGACGCCTATAATCCGGTCGGCATGTTCATGGCAAACCATACGAATCG
ATTCAATCCCTCAACTGCATGACATACGATTTGAAACGTCCCCTGAGGGC
ATTGCGAAGGTGACTATTGCTAGACCCCATGTCCACAATGCCTTTCGCCC
GCGTACGTTGCTGGAATTGGAGCACGCCTTCCGATATGTAAGAGATGCGC
CCTCAATCCGAGCAGTTATACTCACTGGTGAGGGGCACCGCGCATTCTGT
TCTGGTGGAGATCAATCTGCTCGAGGTCATGGAGGATACGTAGGATCGGA
CGGTATTCCTCGCTTAGCAGTGCTGGACTTACACATCATGATGCGCCGGT
TGCCAAAAGTGGTGATTGCTATGGTAGCTGGATATGCTATAGGTGGTGGC
CATATTTTACACATGGTGTGCGATTTGACAATAGCGGCAGATAACGCTCG
TTTCGGACAAACTGGTCCACGGGTTGGCAGTTTTGATGGCGGGTACGGCA
GTTCGTACATGGCACGCATCATCGGCCAGAAGAAGGCCCGTGAGATATGG
TTCTTGTGTCGGCAGTATGACGCCGAAGAATCTTTAAAAATGGGATTAGT
CAACGCTGTTGTGCCATTACAAGACCTAGAAGTAGAGACAGTCAAATGGT
GTCGGGAAGTTCTAGAAAAGAGTCCAACTGCAATTGCATGTTTGAAGGCT
GCTCTAAACGCCGACGGGGATGGACATGCGGGCTTGAGCCAATTAGCAGG
TGAAGCAACCCGGCTCTTCTACCAAAGTGACGAAGGAAAGGAAGGAAAGA
ATGCTTTCTTAGAGAAGCGTAAGCCTCGTTTCGGGAGGTTTTCTGAAAGT
AACCAAGATACCGATTGCGCAGAAGAATTACAACCGCCTCGCGCTCGTCT
ATGA
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