Ggra9176.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9176.t1
Unique NameGgra9176.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length843
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:302746..305274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1122222.AXWR01000004_gene1697
PFAMsInhibitor_I9,Peptidase_S8
Max annot lvl1297|Deinococcus-Thermus
KEGG koko:K20754
Evalue7.04e-67
EggNOG OGsCOG1404@1|root,COG1404@2|Bacteria,1WIDU@1297|Deinococcus-Thermus
EC3.4.21.111
Descriptionpeptidase S8 and S53, subtilisin, kexin, sedolisin
COG categoryO
BRITEko00000,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9176Ggra9176Gracilaria gracilis GNS1m malegenetig00000075_pilon 302746..305274 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9176.t1.start1Ggra9176.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 302746..302748 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9176.t1.CDS1Ggra9176.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 302746..305274 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9176.t1.exon1Ggra9176.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 302746..305274 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9176.t1.stop1Ggra9176.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 305272..305274 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9176.t1Ggra9176.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 302746..305274 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9176.t1 ID=Ggra9176.t1|Name=Ggra9176.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=843bp
MLLASALSGNINDIPTLHPGSAIENSTMGLPRTIEVDGVTKGGQFLFKVD
AHQLNALQGEEVRSIVSVTTCSDKYDLDTILLAYGENPLAADDPNELQPV
EMNDNDCGLQSTIELLTVSLPVYVLLTGYGGAEGGFELQVNDMKRTPAGV
TPWGLDRIDQRRLPLDGQFSVHRGGYGVFVYVLDSGIRTSHREFKNGKGT
SRVIPGVDVVDRKHTFSDETGHGTHVAAIVAGTSFGVAKNATLISVRVID
RNGRGYTSRLIEGLQWTLDDIQSNNHTPALVVMSLNTKYSASLNEAVEKA
NEFGVVVITAAGNSGNDSCLFSPASSKSSISVGATRKDDSRADYSNVGRC
LNIYAPGESITSAWHTSDEAERTLSGTSASCPHVAGTVAVLLAENPTMSP
ADIQSVLFSTATFSVVGNHTTDKTLNTTSNEVSLTESNRLVYVRAIPSLP
TDGDPKEGTMFIYVIYALATSRFLTDACDLSHAKSSSITELFKSHRIASS
IDTTVNIKVCCTYASDRRNGCDVEELGNVTRMIVRLQTGDILAGAVFDFL
HDFATSQEKTMMLETVLQTKVKLLAEPWVVDARGLKYWTAPTIMQPMQTR
LPTSVIISISVAVSVFLFVGFLACAYMYYRRKKAREAAEQEAFRDMATKF
ELSDGRHSNLADLEPGACIEYQKEGLKRTNTEINEGMFRHANPDLALPTP
RQPLAFSPVGPQSVRSNRKQRSTLSSILGEWGQHSQSTTRERGIGSFSLR
RLSFSSKKFPSFITKLTTPRNTKSQKQTSDKKERSILTPVSKQRAGETDS
EIDPKISGCEESSRTCELTETPCESVMMSKDDKVRPPLRNKE*
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spliced messenger RNA

>Ggra9176.t1 ID=Ggra9176.t1|Name=Ggra9176.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2529bp|location=Sequence derived from alignment at tig00000075_pilon:302746..305274+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTACTTGCCTCAGCTTTGTCCGGGAATATCAATGACATTCCAACTCT
GCACCCGGGCTCTGCAATTGAGAATTCTACTATGGGATTGCCGAGGACCA
TAGAAGTCGACGGCGTCACTAAAGGTGGTCAGTTTCTCTTCAAAGTTGAT
GCCCATCAATTAAATGCCCTTCAGGGTGAAGAAGTACGTAGCATTGTTTC
GGTCACTACTTGCTCGGACAAGTACGATTTGGATACTATTCTGTTAGCCT
ATGGAGAAAATCCGCTCGCCGCAGATGATCCAAATGAACTGCAACCAGTT
GAGATGAACGACAATGACTGTGGACTCCAGTCTACTATAGAGCTTTTGAC
TGTTTCTCTTCCAGTCTATGTTCTTCTAACTGGTTATGGGGGTGCAGAGG
GCGGGTTTGAACTACAAGTCAACGACATGAAGCGCACTCCAGCCGGAGTT
ACTCCCTGGGGTTTGGATCGAATTGATCAGAGGCGTCTCCCTTTGGATGG
ACAATTTTCTGTTCATAGAGGCGGATACGGCGTATTTGTATATGTATTGG
ACTCGGGAATACGAACGTCGCACAGAGAATTCAAAAATGGAAAAGGAACA
TCACGAGTCATCCCAGGAGTTGATGTGGTCGATCGGAAACATACATTTTC
GGATGAAACTGGTCATGGTACTCATGTTGCGGCAATTGTCGCTGGAACTT
CTTTTGGTGTCGCGAAGAACGCGACTCTAATATCGGTACGCGTCATTGAT
CGAAACGGGCGTGGATACACTAGTCGCCTTATTGAAGGACTTCAGTGGAC
CTTGGATGACATTCAAAGTAACAATCACACACCAGCTCTGGTCGTGATGT
CGTTAAATACGAAGTATTCAGCATCTTTGAATGAAGCTGTCGAAAAAGCG
AACGAATTTGGTGTGGTGGTCATCACAGCCGCTGGGAACTCAGGAAATGA
CAGTTGTTTGTTTTCACCAGCTTCGAGCAAGTCATCTATATCTGTTGGTG
CAACAAGAAAAGATGATAGTCGCGCAGACTATTCAAATGTCGGACGTTGT
CTCAACATATATGCACCAGGAGAGTCTATTACTTCTGCCTGGCATACGAG
TGATGAGGCAGAAAGGACACTATCAGGGACTTCTGCGTCCTGTCCTCATG
TAGCGGGAACGGTCGCAGTGCTGCTTGCAGAAAATCCCACAATGAGTCCA
GCCGATATACAATCAGTGCTTTTCTCCACAGCTACATTTTCAGTAGTTGG
GAATCACACCACAGATAAAACGCTCAACACTACGAGCAATGAAGTGAGTC
TCACTGAAAGTAACAGACTGGTATACGTCAGGGCTATTCCCTCTTTACCT
ACTGATGGAGACCCAAAGGAAGGAACAATGTTTATATACGTGATATATGC
CCTCGCCACATCAAGATTCTTGACAGATGCTTGCGATCTCTCTCATGCCA
AGAGTTCATCCATCACTGAACTCTTCAAGTCCCATAGAATTGCATCATCA
ATCGATACTACGGTGAACATCAAAGTATGTTGCACATATGCTTCCGACCG
TCGCAATGGCTGTGATGTCGAAGAGCTTGGGAATGTCACTCGAATGATTG
TTCGCCTGCAGACTGGTGATATTCTTGCCGGCGCTGTGTTTGACTTTCTT
CATGATTTCGCCACGTCTCAAGAAAAAACCATGATGCTGGAGACGGTACT
ACAGACGAAGGTGAAACTGTTGGCAGAACCATGGGTTGTTGACGCTAGAG
GCCTGAAGTACTGGACAGCTCCTACAATTATGCAGCCTATGCAAACCAGG
CTCCCGACATCAGTAATAATTTCAATCTCCGTGGCGGTTAGTGTGTTCTT
GTTTGTAGGGTTCTTGGCCTGCGCATACATGTACTACAGGAGGAAGAAAG
CTAGGGAAGCTGCTGAACAAGAAGCCTTCCGGGACATGGCGACGAAATTT
GAACTGTCCGACGGGCGACATAGCAATCTAGCTGATCTTGAACCTGGAGC
TTGTATCGAGTATCAGAAAGAAGGCTTAAAGCGAACAAACACAGAAATCA
ACGAAGGGATGTTCAGACATGCCAACCCAGATTTGGCATTGCCAACCCCA
CGGCAACCACTCGCCTTTTCACCTGTGGGACCTCAGAGTGTAAGGTCAAA
CCGAAAGCAGAGGAGCACGCTATCTAGCATCTTAGGGGAATGGGGCCAAC
ACAGTCAAAGCACTACCAGAGAAAGAGGCATAGGTTCTTTTTCATTACGA
CGTCTATCCTTTAGTTCGAAGAAGTTCCCGTCGTTTATAACGAAATTAAC
CACACCCCGAAATACGAAGTCACAGAAGCAAACATCAGATAAGAAAGAAC
GGAGTATCCTCACTCCTGTATCAAAGCAAAGAGCAGGCGAGACCGACTCG
GAAATCGACCCCAAGATATCCGGGTGTGAGGAGAGTTCGAGAACTTGCGA
ATTAACAGAAACTCCATGTGAATCAGTCATGATGAGCAAAGACGACAAAG
TTCGGccaccgcttcgaaataaggagtaa
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protein sequence of Ggra9176.t1

>Ggra9176.t1 ID=Ggra9176.t1|Name=Ggra9176.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=843bp
MLLASALSGNINDIPTLHPGSAIENSTMGLPRTIEVDGVTKGGQFLFKVD
AHQLNALQGEEVRSIVSVTTCSDKYDLDTILLAYGENPLAADDPNELQPV
EMNDNDCGLQSTIELLTVSLPVYVLLTGYGGAEGGFELQVNDMKRTPAGV
TPWGLDRIDQRRLPLDGQFSVHRGGYGVFVYVLDSGIRTSHREFKNGKGT
SRVIPGVDVVDRKHTFSDETGHGTHVAAIVAGTSFGVAKNATLISVRVID
RNGRGYTSRLIEGLQWTLDDIQSNNHTPALVVMSLNTKYSASLNEAVEKA
NEFGVVVITAAGNSGNDSCLFSPASSKSSISVGATRKDDSRADYSNVGRC
LNIYAPGESITSAWHTSDEAERTLSGTSASCPHVAGTVAVLLAENPTMSP
ADIQSVLFSTATFSVVGNHTTDKTLNTTSNEVSLTESNRLVYVRAIPSLP
TDGDPKEGTMFIYVIYALATSRFLTDACDLSHAKSSSITELFKSHRIASS
IDTTVNIKVCCTYASDRRNGCDVEELGNVTRMIVRLQTGDILAGAVFDFL
HDFATSQEKTMMLETVLQTKVKLLAEPWVVDARGLKYWTAPTIMQPMQTR
LPTSVIISISVAVSVFLFVGFLACAYMYYRRKKAREAAEQEAFRDMATKF
ELSDGRHSNLADLEPGACIEYQKEGLKRTNTEINEGMFRHANPDLALPTP
RQPLAFSPVGPQSVRSNRKQRSTLSSILGEWGQHSQSTTRERGIGSFSLR
RLSFSSKKFPSFITKLTTPRNTKSQKQTSDKKERSILTPVSKQRAGETDS
EIDPKISGCEESSRTCELTETPCESVMMSKDDKVRPPLRNKE*
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mRNA from alignment at tig00000075_pilon:302746..305274+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9176.t1 ID=Ggra9176.t1|Name=Ggra9176.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2529bp|location=Sequence derived from alignment at tig00000075_pilon:302746..305274+ (Gracilaria gracilis GNS1m male)
ATGTTACTTGCCTCAGCTTTGTCCGGGAATATCAATGACATTCCAACTCT GCACCCGGGCTCTGCAATTGAGAATTCTACTATGGGATTGCCGAGGACCA TAGAAGTCGACGGCGTCACTAAAGGTGGTCAGTTTCTCTTCAAAGTTGAT GCCCATCAATTAAATGCCCTTCAGGGTGAAGAAGTACGTAGCATTGTTTC GGTCACTACTTGCTCGGACAAGTACGATTTGGATACTATTCTGTTAGCCT ATGGAGAAAATCCGCTCGCCGCAGATGATCCAAATGAACTGCAACCAGTT GAGATGAACGACAATGACTGTGGACTCCAGTCTACTATAGAGCTTTTGAC TGTTTCTCTTCCAGTCTATGTTCTTCTAACTGGTTATGGGGGTGCAGAGG GCGGGTTTGAACTACAAGTCAACGACATGAAGCGCACTCCAGCCGGAGTT ACTCCCTGGGGTTTGGATCGAATTGATCAGAGGCGTCTCCCTTTGGATGG ACAATTTTCTGTTCATAGAGGCGGATACGGCGTATTTGTATATGTATTGG ACTCGGGAATACGAACGTCGCACAGAGAATTCAAAAATGGAAAAGGAACA TCACGAGTCATCCCAGGAGTTGATGTGGTCGATCGGAAACATACATTTTC GGATGAAACTGGTCATGGTACTCATGTTGCGGCAATTGTCGCTGGAACTT CTTTTGGTGTCGCGAAGAACGCGACTCTAATATCGGTACGCGTCATTGAT CGAAACGGGCGTGGATACACTAGTCGCCTTATTGAAGGACTTCAGTGGAC CTTGGATGACATTCAAAGTAACAATCACACACCAGCTCTGGTCGTGATGT CGTTAAATACGAAGTATTCAGCATCTTTGAATGAAGCTGTCGAAAAAGCG AACGAATTTGGTGTGGTGGTCATCACAGCCGCTGGGAACTCAGGAAATGA CAGTTGTTTGTTTTCACCAGCTTCGAGCAAGTCATCTATATCTGTTGGTG CAACAAGAAAAGATGATAGTCGCGCAGACTATTCAAATGTCGGACGTTGT CTCAACATATATGCACCAGGAGAGTCTATTACTTCTGCCTGGCATACGAG TGATGAGGCAGAAAGGACACTATCAGGGACTTCTGCGTCCTGTCCTCATG TAGCGGGAACGGTCGCAGTGCTGCTTGCAGAAAATCCCACAATGAGTCCA GCCGATATACAATCAGTGCTTTTCTCCACAGCTACATTTTCAGTAGTTGG GAATCACACCACAGATAAAACGCTCAACACTACGAGCAATGAAGTGAGTC TCACTGAAAGTAACAGACTGGTATACGTCAGGGCTATTCCCTCTTTACCT ACTGATGGAGACCCAAAGGAAGGAACAATGTTTATATACGTGATATATGC CCTCGCCACATCAAGATTCTTGACAGATGCTTGCGATCTCTCTCATGCCA AGAGTTCATCCATCACTGAACTCTTCAAGTCCCATAGAATTGCATCATCA ATCGATACTACGGTGAACATCAAAGTATGTTGCACATATGCTTCCGACCG TCGCAATGGCTGTGATGTCGAAGAGCTTGGGAATGTCACTCGAATGATTG TTCGCCTGCAGACTGGTGATATTCTTGCCGGCGCTGTGTTTGACTTTCTT CATGATTTCGCCACGTCTCAAGAAAAAACCATGATGCTGGAGACGGTACT ACAGACGAAGGTGAAACTGTTGGCAGAACCATGGGTTGTTGACGCTAGAG GCCTGAAGTACTGGACAGCTCCTACAATTATGCAGCCTATGCAAACCAGG CTCCCGACATCAGTAATAATTTCAATCTCCGTGGCGGTTAGTGTGTTCTT GTTTGTAGGGTTCTTGGCCTGCGCATACATGTACTACAGGAGGAAGAAAG CTAGGGAAGCTGCTGAACAAGAAGCCTTCCGGGACATGGCGACGAAATTT GAACTGTCCGACGGGCGACATAGCAATCTAGCTGATCTTGAACCTGGAGC TTGTATCGAGTATCAGAAAGAAGGCTTAAAGCGAACAAACACAGAAATCA ACGAAGGGATGTTCAGACATGCCAACCCAGATTTGGCATTGCCAACCCCA CGGCAACCACTCGCCTTTTCACCTGTGGGACCTCAGAGTGTAAGGTCAAA CCGAAAGCAGAGGAGCACGCTATCTAGCATCTTAGGGGAATGGGGCCAAC ACAGTCAAAGCACTACCAGAGAAAGAGGCATAGGTTCTTTTTCATTACGA CGTCTATCCTTTAGTTCGAAGAAGTTCCCGTCGTTTATAACGAAATTAAC CACACCCCGAAATACGAAGTCACAGAAGCAAACATCAGATAAGAAAGAAC GGAGTATCCTCACTCCTGTATCAAAGCAAAGAGCAGGCGAGACCGACTCG GAAATCGACCCCAAGATATCCGGGTGTGAGGAGAGTTCGAGAACTTGCGA ATTAACAGAAACTCCATGTGAATCAGTCATGATGAGCAAAGACGACAAAG TTCGGccaccgcttcgaaataaggagtaa
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Coding sequence (CDS) from alignment at tig00000075_pilon:302746..305274+

>Ggra9176.t1 ID=Ggra9176.t1|Name=Ggra9176.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2529bp|location=Sequence derived from alignment at tig00000075_pilon:302746..305274+ (Gracilaria gracilis GNS1m male)
ATGTTACTTGCCTCAGCTTTGTCCGGGAATATCAATGACATTCCAACTCT
GCACCCGGGCTCTGCAATTGAGAATTCTACTATGGGATTGCCGAGGACCA
TAGAAGTCGACGGCGTCACTAAAGGTGGTCAGTTTCTCTTCAAAGTTGAT
GCCCATCAATTAAATGCCCTTCAGGGTGAAGAAGTACGTAGCATTGTTTC
GGTCACTACTTGCTCGGACAAGTACGATTTGGATACTATTCTGTTAGCCT
ATGGAGAAAATCCGCTCGCCGCAGATGATCCAAATGAACTGCAACCAGTT
GAGATGAACGACAATGACTGTGGACTCCAGTCTACTATAGAGCTTTTGAC
TGTTTCTCTTCCAGTCTATGTTCTTCTAACTGGTTATGGGGGTGCAGAGG
GCGGGTTTGAACTACAAGTCAACGACATGAAGCGCACTCCAGCCGGAGTT
ACTCCCTGGGGTTTGGATCGAATTGATCAGAGGCGTCTCCCTTTGGATGG
ACAATTTTCTGTTCATAGAGGCGGATACGGCGTATTTGTATATGTATTGG
ACTCGGGAATACGAACGTCGCACAGAGAATTCAAAAATGGAAAAGGAACA
TCACGAGTCATCCCAGGAGTTGATGTGGTCGATCGGAAACATACATTTTC
GGATGAAACTGGTCATGGTACTCATGTTGCGGCAATTGTCGCTGGAACTT
CTTTTGGTGTCGCGAAGAACGCGACTCTAATATCGGTACGCGTCATTGAT
CGAAACGGGCGTGGATACACTAGTCGCCTTATTGAAGGACTTCAGTGGAC
CTTGGATGACATTCAAAGTAACAATCACACACCAGCTCTGGTCGTGATGT
CGTTAAATACGAAGTATTCAGCATCTTTGAATGAAGCTGTCGAAAAAGCG
AACGAATTTGGTGTGGTGGTCATCACAGCCGCTGGGAACTCAGGAAATGA
CAGTTGTTTGTTTTCACCAGCTTCGAGCAAGTCATCTATATCTGTTGGTG
CAACAAGAAAAGATGATAGTCGCGCAGACTATTCAAATGTCGGACGTTGT
CTCAACATATATGCACCAGGAGAGTCTATTACTTCTGCCTGGCATACGAG
TGATGAGGCAGAAAGGACACTATCAGGGACTTCTGCGTCCTGTCCTCATG
TAGCGGGAACGGTCGCAGTGCTGCTTGCAGAAAATCCCACAATGAGTCCA
GCCGATATACAATCAGTGCTTTTCTCCACAGCTACATTTTCAGTAGTTGG
GAATCACACCACAGATAAAACGCTCAACACTACGAGCAATGAAGTGAGTC
TCACTGAAAGTAACAGACTGGTATACGTCAGGGCTATTCCCTCTTTACCT
ACTGATGGAGACCCAAAGGAAGGAACAATGTTTATATACGTGATATATGC
CCTCGCCACATCAAGATTCTTGACAGATGCTTGCGATCTCTCTCATGCCA
AGAGTTCATCCATCACTGAACTCTTCAAGTCCCATAGAATTGCATCATCA
ATCGATACTACGGTGAACATCAAAGTATGTTGCACATATGCTTCCGACCG
TCGCAATGGCTGTGATGTCGAAGAGCTTGGGAATGTCACTCGAATGATTG
TTCGCCTGCAGACTGGTGATATTCTTGCCGGCGCTGTGTTTGACTTTCTT
CATGATTTCGCCACGTCTCAAGAAAAAACCATGATGCTGGAGACGGTACT
ACAGACGAAGGTGAAACTGTTGGCAGAACCATGGGTTGTTGACGCTAGAG
GCCTGAAGTACTGGACAGCTCCTACAATTATGCAGCCTATGCAAACCAGG
CTCCCGACATCAGTAATAATTTCAATCTCCGTGGCGGTTAGTGTGTTCTT
GTTTGTAGGGTTCTTGGCCTGCGCATACATGTACTACAGGAGGAAGAAAG
CTAGGGAAGCTGCTGAACAAGAAGCCTTCCGGGACATGGCGACGAAATTT
GAACTGTCCGACGGGCGACATAGCAATCTAGCTGATCTTGAACCTGGAGC
TTGTATCGAGTATCAGAAAGAAGGCTTAAAGCGAACAAACACAGAAATCA
ACGAAGGGATGTTCAGACATGCCAACCCAGATTTGGCATTGCCAACCCCA
CGGCAACCACTCGCCTTTTCACCTGTGGGACCTCAGAGTGTAAGGTCAAA
CCGAAAGCAGAGGAGCACGCTATCTAGCATCTTAGGGGAATGGGGCCAAC
ACAGTCAAAGCACTACCAGAGAAAGAGGCATAGGTTCTTTTTCATTACGA
CGTCTATCCTTTAGTTCGAAGAAGTTCCCGTCGTTTATAACGAAATTAAC
CACACCCCGAAATACGAAGTCACAGAAGCAAACATCAGATAAGAAAGAAC
GGAGTATCCTCACTCCTGTATCAAAGCAAAGAGCAGGCGAGACCGACTCG
GAAATCGACCCCAAGATATCCGGGTGTGAGGAGAGTTCGAGAACTTGCGA
ATTAACAGAAACTCCATGTGAATCAGTCATGATGAGCAAAGACGACAAAG
TTCGGccaccgcttcgaaataaggagtaa
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