Ggra9170.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9170.t1
Unique NameGgra9170.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length185
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:286863..287417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44056.XP_009039321.1
PFAMsCSD
Max annot lvl2759|Eukaryota
Evalue4.44e-06
EggNOG OGs2BQ8T@1|root,2SCCC@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9170Ggra9170Gracilaria gracilis GNS1m malegenetig00000075_pilon 286863..287417 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9170.t1.stop1Ggra9170.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 286863..286865 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9170.t1.CDS1Ggra9170.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 286863..287417 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9170.t1.exon1Ggra9170.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 286863..287417 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9170.t1.start1Ggra9170.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 287415..287417 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9170.t1Ggra9170.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 286863..287417 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9170.t1 ID=Ggra9170.t1|Name=Ggra9170.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=185bp
MQGTDVVIQTEHIKIQSWPHARPDCPSRWNGQRNPCAQCYCYVCDVPVLK
CDDNVLHASADGRTPDWARTKRRRRALAQKWSDIPDLVNLLVSFSVDESQ
LQGKHNPCALRAIPSPTSISIDDKTYGTEKIVKVLDFADSDVVDGDVFSD
REANAAVSTIENSLVDSLRKVKIEQGKDEAEAIE*
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spliced messenger RNA

>Ggra9170.t1 ID=Ggra9170.t1|Name=Ggra9170.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=555bp|location=Sequence derived from alignment at tig00000075_pilon:286863..287417- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGGAACAGACGTTGTCATACAAACGGAACATATCAAGATCCAAAG
CTGGCCACATGCTCGACCTGACTGTCCATCTCGCTGGAATGGACAACGAA
ATCCGTGTGCTCAGTGTTATTGCTATGTCTGCGATGTACCAGTTTTGAAA
TGCGATGATAATGTGCTGCATGCGTCAGCGGATGGGCGGACACCGGACTG
GGCACGTACGAAACGCCGTCGTCGAGCCTTGGCGCAGAAATGGTCGGATA
TTCCTGATCTTGTGAACCTACTTGTATCGTTCTCCGTCGATGAAAGCCAG
TTGCAGGGCAAACATAACCCTTGTGCTCTTCGTGCCATTCCGTCGCCGAC
TTCCATCAGTATTGACGACAAAACTTACGGGACTGAGAAGATCGTGAAGG
TCCTGGACTTTGCAGACAGCGACGTCGTCGACGGGGATGTGTTCAGCGAC
CGGGAGGCTAACGCAGCGGTTTCAACGATCGAAAACTCATTGGTGGATAG
CCTCCGGAAGGTGAAGATAGAACAAGGAAAGGATGAAGCAGAGGCGATTG
AGTGA
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protein sequence of Ggra9170.t1

>Ggra9170.t1 ID=Ggra9170.t1|Name=Ggra9170.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=185bp
MQGTDVVIQTEHIKIQSWPHARPDCPSRWNGQRNPCAQCYCYVCDVPVLK
CDDNVLHASADGRTPDWARTKRRRRALAQKWSDIPDLVNLLVSFSVDESQ
LQGKHNPCALRAIPSPTSISIDDKTYGTEKIVKVLDFADSDVVDGDVFSD
REANAAVSTIENSLVDSLRKVKIEQGKDEAEAIE*
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mRNA from alignment at tig00000075_pilon:286863..287417-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9170.t1 ID=Ggra9170.t1|Name=Ggra9170.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=555bp|location=Sequence derived from alignment at tig00000075_pilon:286863..287417- (Gracilaria gracilis GNS1m male)
ATGCAGGGAACAGACGTTGTCATACAAACGGAACATATCAAGATCCAAAG
CTGGCCACATGCTCGACCTGACTGTCCATCTCGCTGGAATGGACAACGAA
ATCCGTGTGCTCAGTGTTATTGCTATGTCTGCGATGTACCAGTTTTGAAA
TGCGATGATAATGTGCTGCATGCGTCAGCGGATGGGCGGACACCGGACTG
GGCACGTACGAAACGCCGTCGTCGAGCCTTGGCGCAGAAATGGTCGGATA
TTCCTGATCTTGTGAACCTACTTGTATCGTTCTCCGTCGATGAAAGCCAG
TTGCAGGGCAAACATAACCCTTGTGCTCTTCGTGCCATTCCGTCGCCGAC
TTCCATCAGTATTGACGACAAAACTTACGGGACTGAGAAGATCGTGAAGG
TCCTGGACTTTGCAGACAGCGACGTCGTCGACGGGGATGTGTTCAGCGAC
CGGGAGGCTAACGCAGCGGTTTCAACGATCGAAAACTCATTGGTGGATAG
CCTCCGGAAGGTGAAGATAGAACAAGGAAAGGATGAAGCAGAGGCGATTG
AGTGA
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Coding sequence (CDS) from alignment at tig00000075_pilon:286863..287417-

>Ggra9170.t1 ID=Ggra9170.t1|Name=Ggra9170.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=555bp|location=Sequence derived from alignment at tig00000075_pilon:286863..287417- (Gracilaria gracilis GNS1m male)
ATGCAGGGAACAGACGTTGTCATACAAACGGAACATATCAAGATCCAAAG
CTGGCCACATGCTCGACCTGACTGTCCATCTCGCTGGAATGGACAACGAA
ATCCGTGTGCTCAGTGTTATTGCTATGTCTGCGATGTACCAGTTTTGAAA
TGCGATGATAATGTGCTGCATGCGTCAGCGGATGGGCGGACACCGGACTG
GGCACGTACGAAACGCCGTCGTCGAGCCTTGGCGCAGAAATGGTCGGATA
TTCCTGATCTTGTGAACCTACTTGTATCGTTCTCCGTCGATGAAAGCCAG
TTGCAGGGCAAACATAACCCTTGTGCTCTTCGTGCCATTCCGTCGCCGAC
TTCCATCAGTATTGACGACAAAACTTACGGGACTGAGAAGATCGTGAAGG
TCCTGGACTTTGCAGACAGCGACGTCGTCGACGGGGATGTGTTCAGCGAC
CGGGAGGCTAACGCAGCGGTTTCAACGATCGAAAACTCATTGGTGGATAG
CCTCCGGAAGGTGAAGATAGAACAAGGAAAGGATGAAGCAGAGGCGATTG
AGTGA
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