Ggra9160.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9160.t1
Unique NameGgra9160.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length296
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:266227..267194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog313624.NSP_7750
PFAMsABC_tran
Max annot lvl1117|Cyanobacteria
KEGG koko:K16787
KEGG TC3.A.1.25,3.A.1.28,3.A.1.29,3.A.1.30,3.A.1.31,3.A.1.32,3.A.1.33,3.A.1.35
KEGG Pathwayko02010,map02010
KEGG ModuleM00582
Evalue1.17e-46
EggNOG OGsCOG1122@1|root,COG1122@2|Bacteria,1G1A8@1117|Cyanobacteria,1HIKN@1161|Nostocales
DescriptionABC-type cobalt transport system ATPase component
COG categoryP
BRITEko00000,ko00001,ko00002,ko01000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9160Ggra9160Gracilaria gracilis GNS1m malegenetig00000075_pilon 266227..267194 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9160.t1Ggra9160.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 266227..267194 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9160.t1.start1Ggra9160.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 266227..266229 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9160.t1.CDS1Ggra9160.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 266227..266500 +
Ggra9160.t1.CDS2Ggra9160.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000075_pilon 266581..267194 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9160.t1.exon1Ggra9160.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 266227..266500 +
Ggra9160.t1.exon2Ggra9160.t1.exon2Gracilaria gracilis GNS1m maleexontig00000075_pilon 266581..267194 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9160.t1.intron1Ggra9160.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000075_pilon 266501..266580 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9160.t1.stop1Ggra9160.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 267192..267194 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9160.t1 ID=Ggra9160.t1|Name=Ggra9160.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=296bp
MNAFVGVPPFFKTFSYSKTRLSRRPASRSRVRACTGKNAAPNIRVPLLEL
RDIWYRLPNNYDVQLFRGLNLKVFPNEFVVLIGANGAGKSTIINLMTGLI
KLRPRHGSILWDGKVMKPKHLLDNIGLVLQDPASYLFLPTVLDELVMGRP
EKTPDDVRNVMAAVGLQNVSLLSCPRSLSGGQVRRLALADQLMRNPRPAL
FALDEPLAGVDWTGRRQLADLLGSLKRMFAIVIISHEPGELLKYADRVIE
VGRGGAKEIDPRIVEKAVRVRAERREAAKAKSRMEAIEYMKKNGT*
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spliced messenger RNA

>Ggra9160.t1 ID=Ggra9160.t1|Name=Ggra9160.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=888bp|location=Sequence derived from alignment at tig00000075_pilon:266227..267194+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGCATTCGTCGGGGTTCCGCCCTTTTTCAAAACCTTTTCGTACTC
GAAAACGAGATTATCGCGGAGACCTGCGAGCAGAAGTAGAGTGAGAGCTT
GCACGGGAAAGAATGCTGCCCCTAACATTCGTGTTCCTTTACTAGAGCTG
CGGGATATATGGTACCGATTGCCTAATAACTACGATGTTCAATTGTTTCG
AGGTTTGAATCTGAAGGTGTTCCCTAATGAATTTGTGGTCTTGATAGGAG
CGAACGGAGCTGGGAAATCCACAATCATTAACCTAATGACTGGTCTAATA
AAGCTTAGACCACGACATGGATCCATTTTGTGGGATGGCAAAGTAATGAA
GCCGAAGCATTTGCTTGATAACATTGGACTCGTTCTACAGGATCCTGCTA
GTTACTTATTTCTACCAACAGTGCTCGACGAGCTCGTAATGGGGCGCCCT
GAAAAGACCCCCGACGACGTTCGCAACGTGATGGCCGCCGTCGGTTTACA
AAACGTTTCACTCTTGAGTTGCCCCCGGTCGCTCAGTGGTGGACAAGTTC
GGCGCTTAGCTCTGGCAGATCAGTTGATGCGGAATCCGAGACCAGCGCTT
TTTGCTTTGGACGAACCGTTAGCTGGAGTTGACTGGACAGGGCGCCGACA
GCTTGCCGATCTCCTTGGGTCTCTCAAGAGAATGTTTGCCATAGTTATAA
TCTCTCATGAGCCTGGGGAGCTTCTGAAGTATGCAGATAGGGTGATTGAA
GTTGGCCGTGGCGGCGCAAAGGAGATTGACCCGAGAATTGTTGAGAAGGC
CGTGCGAGTTCGTGCAGAAAGAAGAGAAGCAGCGAAGGCCAAGTCTCGAA
TGGAAGCTATTGAGTATATGAAGAAAAATGGGACATAA
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protein sequence of Ggra9160.t1

>Ggra9160.t1 ID=Ggra9160.t1|Name=Ggra9160.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=296bp
MNAFVGVPPFFKTFSYSKTRLSRRPASRSRVRACTGKNAAPNIRVPLLEL
RDIWYRLPNNYDVQLFRGLNLKVFPNEFVVLIGANGAGKSTIINLMTGLI
KLRPRHGSILWDGKVMKPKHLLDNIGLVLQDPASYLFLPTVLDELVMGRP
EKTPDDVRNVMAAVGLQNVSLLSCPRSLSGGQVRRLALADQLMRNPRPAL
FALDEPLAGVDWTGRRQLADLLGSLKRMFAIVIISHEPGELLKYADRVIE
VGRGGAKEIDPRIVEKAVRVRAERREAAKAKSRMEAIEYMKKNGT*
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mRNA from alignment at tig00000075_pilon:266227..267194+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9160.t1 ID=Ggra9160.t1|Name=Ggra9160.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=968bp|location=Sequence derived from alignment at tig00000075_pilon:266227..267194+ (Gracilaria gracilis GNS1m male)
ATGAATGCATTCGTCGGGGTTCCGCCCTTTTTCAAAACCTTTTCGTACTC
GAAAACGAGATTATCGCGGAGACCTGCGAGCAGAAGTAGAGTGAGAGCTT
GCACGGGAAAGAATGCTGCCCCTAACATTCGTGTTCCTTTACTAGAGCTG
CGGGATATATGGTACCGATTGCCTAATAACTACGATGTTCAATTGTTTCG
AGGTTTGAATCTGAAGGTGTTCCCTAATGAATTTGTGGTCTTGATAGGAG
CGAACGGAGCTGGGAAATCCACAAGTAAGTTGGTCAAGACCACGATACTT
GTCGGATGCATACTGATACACCTGTATTCTTCTTTCTTCTTGTCTACGTG
ATAGTCATTAACCTAATGACTGGTCTAATAAAGCTTAGACCACGACATGG
ATCCATTTTGTGGGATGGCAAAGTAATGAAGCCGAAGCATTTGCTTGATA
ACATTGGACTCGTTCTACAGGATCCTGCTAGTTACTTATTTCTACCAACA
GTGCTCGACGAGCTCGTAATGGGGCGCCCTGAAAAGACCCCCGACGACGT
TCGCAACGTGATGGCCGCCGTCGGTTTACAAAACGTTTCACTCTTGAGTT
GCCCCCGGTCGCTCAGTGGTGGACAAGTTCGGCGCTTAGCTCTGGCAGAT
CAGTTGATGCGGAATCCGAGACCAGCGCTTTTTGCTTTGGACGAACCGTT
AGCTGGAGTTGACTGGACAGGGCGCCGACAGCTTGCCGATCTCCTTGGGT
CTCTCAAGAGAATGTTTGCCATAGTTATAATCTCTCATGAGCCTGGGGAG
CTTCTGAAGTATGCAGATAGGGTGATTGAAGTTGGCCGTGGCGGCGCAAA
GGAGATTGACCCGAGAATTGTTGAGAAGGCCGTGCGAGTTCGTGCAGAAA
GAAGAGAAGCAGCGAAGGCCAAGTCTCGAATGGAAGCTATTGAGTATATG
AAGAAAAATGGGACATAA
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Coding sequence (CDS) from alignment at tig00000075_pilon:266227..267194+

>Ggra9160.t1 ID=Ggra9160.t1|Name=Ggra9160.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=888bp|location=Sequence derived from alignment at tig00000075_pilon:266227..267194+ (Gracilaria gracilis GNS1m male)
ATGAATGCATTCGTCGGGGTTCCGCCCTTTTTCAAAACCTTTTCGTACTC
GAAAACGAGATTATCGCGGAGACCTGCGAGCAGAAGTAGAGTGAGAGCTT
GCACGGGAAAGAATGCTGCCCCTAACATTCGTGTTCCTTTACTAGAGCTG
CGGGATATATGGTACCGATTGCCTAATAACTACGATGTTCAATTGTTTCG
AGGTTTGAATCTGAAGGTGTTCCCTAATGAATTTGTGGTCTTGATAGGAG
CGAACGGAGCTGGGAAATCCACAATCATTAACCTAATGACTGGTCTAATA
AAGCTTAGACCACGACATGGATCCATTTTGTGGGATGGCAAAGTAATGAA
GCCGAAGCATTTGCTTGATAACATTGGACTCGTTCTACAGGATCCTGCTA
GTTACTTATTTCTACCAACAGTGCTCGACGAGCTCGTAATGGGGCGCCCT
GAAAAGACCCCCGACGACGTTCGCAACGTGATGGCCGCCGTCGGTTTACA
AAACGTTTCACTCTTGAGTTGCCCCCGGTCGCTCAGTGGTGGACAAGTTC
GGCGCTTAGCTCTGGCAGATCAGTTGATGCGGAATCCGAGACCAGCGCTT
TTTGCTTTGGACGAACCGTTAGCTGGAGTTGACTGGACAGGGCGCCGACA
GCTTGCCGATCTCCTTGGGTCTCTCAAGAGAATGTTTGCCATAGTTATAA
TCTCTCATGAGCCTGGGGAGCTTCTGAAGTATGCAGATAGGGTGATTGAA
GTTGGCCGTGGCGGCGCAAAGGAGATTGACCCGAGAATTGTTGAGAAGGC
CGTGCGAGTTCGTGCAGAAAGAAGAGAAGCAGCGAAGGCCAAGTCTCGAA
TGGAAGCTATTGAGTATATGAAGAAAAATGGGACATAA
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