Ggra9156.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9156.t1
Unique Name	Ggra9156.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	621

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000075_pilon	contig	tig00000075_pilon:258924..260786 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	554065.XP_005851993.1
PFAMs	DUF2009
Max annot lvl	3041\|Chlorophyta
Evalue	8.99e-191
EggNOG OGs	28J77@1\|root,2QRJJ@2759\|Eukaryota,37YMR@33090\|Viridiplantae,34JJD@3041\|Chlorophyta
Description	Protein of unknown function (DUF2009)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9156	Ggra9156	Gracilaria gracilis GNS1m male	gene	tig00000075_pilon 258924..260786 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9156.t1.stop1	Ggra9156.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000075_pilon 258924..258926 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9156.t1.CDS1	Ggra9156.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000075_pilon 258924..260786 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9156.t1.exon1	Ggra9156.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000075_pilon 258924..260786 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9156.t1.start1	Ggra9156.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000075_pilon 260784..260786 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9156.t1	Ggra9156.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000075_pilon 258924..260786 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000075_pilon:258924..260786-
coding sequence from alignment at tig00000075_pilon:258924..260786-

mRNA sequence

>Ggra9156.t1 ID=Ggra9156.t1|Name=Ggra9156.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=621bp
MGADSRGHRSGELSAVLDQSLNDADTPNGNHPAHQLDDAQIEALAQQQEQ
SRRAFDAVLGKSSQQWRAETDPKVLAEALVTLLDQIRGPALTRVGPHHAS
NQSSSTQLDTQLRAHASDNDDHDINMDQYDDASDAPLDQRQNGHSAANER
ITASTASRAKFIPLRLSQAERKILRLVEAALNVSEYTDVVDVLATSRMKT
RQRIHAQIRDLCSILTGLAVAMDYNKGQKLVKDRDFADNQAFFQTAFEVA
RRHKVANPEKSRNTYGKLIHMLQDSVNVEIVRLLEFSCVKPLVTVASYLE
ERGGLELLDDPLIEKATAEIIPDGKTRRTVQREIHAKEHAVSILAKRYRN
GRSLDEDEVRRCLYSIGDNNAYLRAARDPCDIMIKYLHAYFKPERPADKR
DSIAITEGVAGARLTHDHVRQFRYVFQSLALWREVCHEMYRLWYLSEKDL
LDSKNPYHLRNTGQGLNRVQAAPSVSRAMYEILNTVQRRVGKWVGSSVVH
LGDYNVPNALTFIDKYAQVQRILGPLTTCIRRIGEVAANDRSIQKYINET
FGGVEPARKLILRDFFRHAFDGSGASDWFSAGSCIDGRLTSAWNWCSDIE
KKTYWSLFLLTGFTGFDGDF*

spliced messenger RNA

>Ggra9156.t1 ID=Ggra9156.t1|Name=Ggra9156.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1863bp|location=Sequence derived from alignment at tig00000075_pilon:258924..260786- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCTGACAGTCGAGGTCATCGTAGCGGTGAATTATCGGCCGTACT
CGATCAATCGCTCAACGATGCTGACACTCCCAACGGCAATCACCCCGCAC
ATCAGCTGGACGACGCTCAGATCGAGGCGCTTGCGCAGCAACAGGAGCAG
TCGCGCCGCGCCTTTGACGCCGTTCTAGGGAAGAGTTCGCAGCAATGGCG
AGCTGAAACAGACCCTAAGGTGCTCGCGGAGGCACTGGTTACCCTTCTTG
ATCAGATCCGAGGCCCGGCTTTGACGCGCGTCGGTCCGCATCACGCTTCT
AATCAATCTTCTTCCACGCAGCTTGATACGCAACTGCGTGCTCATGCTTC
TGATAACGATGATCATGATATTAACATGGACCAATATGATGACGCGAGCG
ACGCCCCTTTGGACCAGCGTCAAAATGGCCACTCTGCTGCCAATGAGCGT
ATCACTGCCTCTACTGCCAGTAGAGCAAAGTTCATCCCGTTGCGCCTGTC
ACAGGCCGAGCGCAAGATCTTGCGCTTGGTTGAAGCCGCGCTCAATGTTA
GTGAGTATACCGATGTTGTCGATGTCTTGGCCACTTCGCGAATGAAAACG
AGGCAGAGAATACACGCTCAGATTAGAGACTTGTGCTCCATCCTCACCGG
TTTGGCCGTCGCCATGGACTACAACAAGGGACAGAAACTTGTCAAAGATC
GTGATTTTGCCGACAACCAAGCCTTCTTCCAGACCGCCTTTGAGGTTGCT
CGCCGTCACAAGGTGGCCAATCCCGAAAAGAGTCGTAACACTTATGGCAA
ACTAATCCATATGTTGCAGGATTCCGTCAACGTCGAAATCGTGCGCCTTC
TTGAGTTCTCGTGCGTCAAGCCTCTCGTCACGGTTGCGTCCTACTTGGAA
GAGCGTGGTGGTCTGGAGCTTTTGGATGATCCTTTAATTGAAAAGGCGAC
AGCTGAGATTATTCCGGACGGGAAGACGAGACGCACTGTACAGCGAGAGA
TTCATGCTAAGGAGCATGCTGTTTCCATTCTTGCCAAACGATATAGAAAT
GGTCGCAGTCTCGACGAGGATGAAGTTCGTCGTTGTCTGTATTCTATTGG
TGACAATAATGCCTATTTGCGAGCAGCTCGAGACCCTTGCGATATCATGA
TCAAATACCTTCATGCTTACTTTAAGCCTGAGCGACCCGCTGACAAACGT
GATAGTATTGCCATCACCGAGGGTGTGGCAGGCGCCCGTCTAACTCATGA
TCACGTCAGACAATTCCGATACGTCTTTCAGAGCTTAGCCTTGTGGCGGG
AGGTGTGTCATGAAATGTACAGATTATGGTATCTCAGTGAAAAGGATTTG
CTCGATTCTAAGAACCCCTATCACTTACGCAACACCGGTCAAGGTCTCAA
CAGAGTGCAGGCCGCTCCCAGTGTTTCACGAGCCATGTATGAGATTCTGA
ATACGGTGCAGAGACGTGTCGGGAAGTGGGTAGGCTCGTCCGTTGTGCAT
TTAGGGGACTACAACGTCCCGAACGCTCTGACCTTCATCGATAAATATGC
ACAGGTTCAAAGAATTTTGGGGCCTTTAACGACATGCATTCGACGCATTG
GTGAGGTCGCTGCCAATGACAGGAGTATTCAAAAGTATATCAATGAAACG
TTCGGAGGAGTGGAACCGGCCCGGAAACTCATTTTGAGAGACTTTTTCAG
ACATGCGTTTGATGGTAGTGGTGCAAGCGACTGGTTCAGTGCTGGTTCAT
GTATTGACGGACGACTGACTAGTGCTTGGAACTGGTGCAGTGATATTGAA
AAGAAGACTTATTGGTCTTTGTTTTTGCTCACAGGGTTTACTGGGTTTGA
CGGTGACTTCTGA

protein sequence of Ggra9156.t1

>Ggra9156.t1 ID=Ggra9156.t1|Name=Ggra9156.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=621bp
MGADSRGHRSGELSAVLDQSLNDADTPNGNHPAHQLDDAQIEALAQQQEQ
SRRAFDAVLGKSSQQWRAETDPKVLAEALVTLLDQIRGPALTRVGPHHAS
NQSSSTQLDTQLRAHASDNDDHDINMDQYDDASDAPLDQRQNGHSAANER
ITASTASRAKFIPLRLSQAERKILRLVEAALNVSEYTDVVDVLATSRMKT
RQRIHAQIRDLCSILTGLAVAMDYNKGQKLVKDRDFADNQAFFQTAFEVA
RRHKVANPEKSRNTYGKLIHMLQDSVNVEIVRLLEFSCVKPLVTVASYLE
ERGGLELLDDPLIEKATAEIIPDGKTRRTVQREIHAKEHAVSILAKRYRN
GRSLDEDEVRRCLYSIGDNNAYLRAARDPCDIMIKYLHAYFKPERPADKR
DSIAITEGVAGARLTHDHVRQFRYVFQSLALWREVCHEMYRLWYLSEKDL
LDSKNPYHLRNTGQGLNRVQAAPSVSRAMYEILNTVQRRVGKWVGSSVVH
LGDYNVPNALTFIDKYAQVQRILGPLTTCIRRIGEVAANDRSIQKYINET
FGGVEPARKLILRDFFRHAFDGSGASDWFSAGSCIDGRLTSAWNWCSDIE
KKTYWSLFLLTGFTGFDGDF*

mRNA from alignment at tig00000075_pilon:258924..260786-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9156.t1 ID=Ggra9156.t1|Name=Ggra9156.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1863bp|location=Sequence derived from alignment at tig00000075_pilon:258924..260786- (Gracilaria gracilis GNS1m male)
ATGGGCGCTGACAGTCGAGGTCATCGTAGCGGTGAATTATCGGCCGTACT
CGATCAATCGCTCAACGATGCTGACACTCCCAACGGCAATCACCCCGCAC
ATCAGCTGGACGACGCTCAGATCGAGGCGCTTGCGCAGCAACAGGAGCAG
TCGCGCCGCGCCTTTGACGCCGTTCTAGGGAAGAGTTCGCAGCAATGGCG
AGCTGAAACAGACCCTAAGGTGCTCGCGGAGGCACTGGTTACCCTTCTTG
ATCAGATCCGAGGCCCGGCTTTGACGCGCGTCGGTCCGCATCACGCTTCT
AATCAATCTTCTTCCACGCAGCTTGATACGCAACTGCGTGCTCATGCTTC
TGATAACGATGATCATGATATTAACATGGACCAATATGATGACGCGAGCG
ACGCCCCTTTGGACCAGCGTCAAAATGGCCACTCTGCTGCCAATGAGCGT
ATCACTGCCTCTACTGCCAGTAGAGCAAAGTTCATCCCGTTGCGCCTGTC
ACAGGCCGAGCGCAAGATCTTGCGCTTGGTTGAAGCCGCGCTCAATGTTA
GTGAGTATACCGATGTTGTCGATGTCTTGGCCACTTCGCGAATGAAAACG
AGGCAGAGAATACACGCTCAGATTAGAGACTTGTGCTCCATCCTCACCGG
TTTGGCCGTCGCCATGGACTACAACAAGGGACAGAAACTTGTCAAAGATC
GTGATTTTGCCGACAACCAAGCCTTCTTCCAGACCGCCTTTGAGGTTGCT
CGCCGTCACAAGGTGGCCAATCCCGAAAAGAGTCGTAACACTTATGGCAA
ACTAATCCATATGTTGCAGGATTCCGTCAACGTCGAAATCGTGCGCCTTC
TTGAGTTCTCGTGCGTCAAGCCTCTCGTCACGGTTGCGTCCTACTTGGAA
GAGCGTGGTGGTCTGGAGCTTTTGGATGATCCTTTAATTGAAAAGGCGAC
AGCTGAGATTATTCCGGACGGGAAGACGAGACGCACTGTACAGCGAGAGA
TTCATGCTAAGGAGCATGCTGTTTCCATTCTTGCCAAACGATATAGAAAT
GGTCGCAGTCTCGACGAGGATGAAGTTCGTCGTTGTCTGTATTCTATTGG
TGACAATAATGCCTATTTGCGAGCAGCTCGAGACCCTTGCGATATCATGA
TCAAATACCTTCATGCTTACTTTAAGCCTGAGCGACCCGCTGACAAACGT
GATAGTATTGCCATCACCGAGGGTGTGGCAGGCGCCCGTCTAACTCATGA
TCACGTCAGACAATTCCGATACGTCTTTCAGAGCTTAGCCTTGTGGCGGG
AGGTGTGTCATGAAATGTACAGATTATGGTATCTCAGTGAAAAGGATTTG
CTCGATTCTAAGAACCCCTATCACTTACGCAACACCGGTCAAGGTCTCAA
CAGAGTGCAGGCCGCTCCCAGTGTTTCACGAGCCATGTATGAGATTCTGA
ATACGGTGCAGAGACGTGTCGGGAAGTGGGTAGGCTCGTCCGTTGTGCAT
TTAGGGGACTACAACGTCCCGAACGCTCTGACCTTCATCGATAAATATGC
ACAGGTTCAAAGAATTTTGGGGCCTTTAACGACATGCATTCGACGCATTG
GTGAGGTCGCTGCCAATGACAGGAGTATTCAAAAGTATATCAATGAAACG
TTCGGAGGAGTGGAACCGGCCCGGAAACTCATTTTGAGAGACTTTTTCAG
ACATGCGTTTGATGGTAGTGGTGCAAGCGACTGGTTCAGTGCTGGTTCAT
GTATTGACGGACGACTGACTAGTGCTTGGAACTGGTGCAGTGATATTGAA
AAGAAGACTTATTGGTCTTTGTTTTTGCTCACAGGGTTTACTGGGTTTGA
CGGTGACTTCTGA

Coding sequence (CDS) from alignment at tig00000075_pilon:258924..260786-

>Ggra9156.t1 ID=Ggra9156.t1|Name=Ggra9156.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1863bp|location=Sequence derived from alignment at tig00000075_pilon:258924..260786- (Gracilaria gracilis GNS1m male)
ATGGGCGCTGACAGTCGAGGTCATCGTAGCGGTGAATTATCGGCCGTACT
CGATCAATCGCTCAACGATGCTGACACTCCCAACGGCAATCACCCCGCAC
ATCAGCTGGACGACGCTCAGATCGAGGCGCTTGCGCAGCAACAGGAGCAG
TCGCGCCGCGCCTTTGACGCCGTTCTAGGGAAGAGTTCGCAGCAATGGCG
AGCTGAAACAGACCCTAAGGTGCTCGCGGAGGCACTGGTTACCCTTCTTG
ATCAGATCCGAGGCCCGGCTTTGACGCGCGTCGGTCCGCATCACGCTTCT
AATCAATCTTCTTCCACGCAGCTTGATACGCAACTGCGTGCTCATGCTTC
TGATAACGATGATCATGATATTAACATGGACCAATATGATGACGCGAGCG
ACGCCCCTTTGGACCAGCGTCAAAATGGCCACTCTGCTGCCAATGAGCGT
ATCACTGCCTCTACTGCCAGTAGAGCAAAGTTCATCCCGTTGCGCCTGTC
ACAGGCCGAGCGCAAGATCTTGCGCTTGGTTGAAGCCGCGCTCAATGTTA
GTGAGTATACCGATGTTGTCGATGTCTTGGCCACTTCGCGAATGAAAACG
AGGCAGAGAATACACGCTCAGATTAGAGACTTGTGCTCCATCCTCACCGG
TTTGGCCGTCGCCATGGACTACAACAAGGGACAGAAACTTGTCAAAGATC
GTGATTTTGCCGACAACCAAGCCTTCTTCCAGACCGCCTTTGAGGTTGCT
CGCCGTCACAAGGTGGCCAATCCCGAAAAGAGTCGTAACACTTATGGCAA
ACTAATCCATATGTTGCAGGATTCCGTCAACGTCGAAATCGTGCGCCTTC
TTGAGTTCTCGTGCGTCAAGCCTCTCGTCACGGTTGCGTCCTACTTGGAA
GAGCGTGGTGGTCTGGAGCTTTTGGATGATCCTTTAATTGAAAAGGCGAC
AGCTGAGATTATTCCGGACGGGAAGACGAGACGCACTGTACAGCGAGAGA
TTCATGCTAAGGAGCATGCTGTTTCCATTCTTGCCAAACGATATAGAAAT
GGTCGCAGTCTCGACGAGGATGAAGTTCGTCGTTGTCTGTATTCTATTGG
TGACAATAATGCCTATTTGCGAGCAGCTCGAGACCCTTGCGATATCATGA
TCAAATACCTTCATGCTTACTTTAAGCCTGAGCGACCCGCTGACAAACGT
GATAGTATTGCCATCACCGAGGGTGTGGCAGGCGCCCGTCTAACTCATGA
TCACGTCAGACAATTCCGATACGTCTTTCAGAGCTTAGCCTTGTGGCGGG
AGGTGTGTCATGAAATGTACAGATTATGGTATCTCAGTGAAAAGGATTTG
CTCGATTCTAAGAACCCCTATCACTTACGCAACACCGGTCAAGGTCTCAA
CAGAGTGCAGGCCGCTCCCAGTGTTTCACGAGCCATGTATGAGATTCTGA
ATACGGTGCAGAGACGTGTCGGGAAGTGGGTAGGCTCGTCCGTTGTGCAT
TTAGGGGACTACAACGTCCCGAACGCTCTGACCTTCATCGATAAATATGC
ACAGGTTCAAAGAATTTTGGGGCCTTTAACGACATGCATTCGACGCATTG
GTGAGGTCGCTGCCAATGACAGGAGTATTCAAAAGTATATCAATGAAACG
TTCGGAGGAGTGGAACCGGCCCGGAAACTCATTTTGAGAGACTTTTTCAG
ACATGCGTTTGATGGTAGTGGTGCAAGCGACTGGTTCAGTGCTGGTTCAT
GTATTGACGGACGACTGACTAGTGCTTGGAACTGGTGCAGTGATATTGAA
AAGAAGACTTATTGGTCTTTGTTTTTGCTCACAGGGTTTACTGGGTTTGA
CGGTGACTTCTGA