Ggra9145.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9145.t1
Unique NameGgra9145.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length288
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:90705..91568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705640.1
Preferred nameSQD1
PFAMsAldose_epim,Epimerase
Max annot lvl2759|Eukaryota
KEGG rclassRC00563,RC01469
KEGG koko:K01785,ko:K06118
KEGG ReactionR01602,R05775,R10619
KEGG Pathwayko00010,ko00052,ko00520,ko00561,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map00520,map00561,map01100,map01110,map01120,map01130
KEGG ModuleM00632
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006643,GO:0006664,GO:0006950,GO:0007154,GO:0008146,GO:0008150,GO:0008152,GO:0008270,GO:0008610,GO:0009058,GO:0009247,GO:0009267,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009987,GO:0009991,GO:0016036,GO:0016740,GO:0016782,GO:0019899,GO:0019904,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0042594,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046467,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0101016,GO:1901135,GO:1901137,GO:1901576,GO:1903509
Evalue1.21e-136
EggNOG OGsCOG1087@1|root,KOG1371@2759|Eukaryota
EC3.13.1.1,5.1.3.3
Descriptionracemase and epimerase activity, acting on carbohydrates and derivatives
COG categoryM
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9145Ggra9145Gracilaria gracilis GNS1m malegenetig00000075_pilon 90705..91568 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9145.t1.stop1Ggra9145.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 90705..90707 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9145.t1.CDS1Ggra9145.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 90705..91568 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9145.t1.exon1Ggra9145.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 90705..91568 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9145.t1.start1Ggra9145.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 91566..91568 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9145.t1Ggra9145.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 90705..91568 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9145.t1 ID=Ggra9145.t1|Name=Ggra9145.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=288bp
MGVYGYGTSGGEIPEGYINVVLPGGRQSRILHPSYPGSVYHATKCLDQIL
FQFYQKNDSLRITDLHQGIVWGTNTAQTRRDERLINRFDYDSDYGTVLNR
FLMQAALGVPLTVYGTGGQTRAFIHIQDTARCISLAIANPPQPGAQVEIF
NQVAETHRVRDLAKLISDKTGCEVKNISNPRNESAENELDVANRKFKSLG
LEPTTLEMGLLDEVVSIAGKYKDRCDKSKILPNSFWNKNRRRECEEFGMS
VSDLGAYSVAEEEAMLYSLSKGDLATMEKLRKVLQGA*
back to top

spliced messenger RNA

>Ggra9145.t1 ID=Ggra9145.t1|Name=Ggra9145.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=864bp|location=Sequence derived from alignment at tig00000075_pilon:90705..91568- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGTGTATGGGTATGGAACTTCTGGTGGCGAGATTCCGGAGGGTTA
CATCAACGTCGTACTCCCAGGAGGAAGACAATCTCGTATCTTACATCCAT
CGTATCCTGGCTCGGTGTATCATGCCACCAAATGTCTGGACCAGATTCTC
TTCCAGTTCTATCAGAAGAACGATTCTCTTCGCATCACCGATTTGCATCA
GGGCATTGTATGGGGCACCAACACTGCACAAACTCGACGCGATGAACGTC
TCATCAATCGATTTGACTACGATTCCGACTACGGAACCGTGTTGAATCGC
TTCCTCATGCAGGCTGCGCTCGGCGTTCCGCTCACGGTGTACGGAACTGG
CGGTCAGACCAGAGCGTTTATCCACATTCAAGATACCGCTAGATGCATTA
GTCTGGCCATTGCTAACCCGCCACAGCCAGGCGCGCAGGTGGAGATCTTC
AATCAAGTGGCTGAGACGCATCGCGTTCGAGATCTTGCCAAGTTGATCTC
GGACAAGACTGGCTGTGAGGTGAAGAACATTAGCAATCCGCGAAACGAAT
CGGCCGAGAATGAACTTGATGTGGCCAACCGCAAGTTTAAGAGCTTGGGA
TTGGAGCCGACTACATTGGAAATGGGGCTGCTTGATGAGGTTGTTTCGAT
TGCTGGCAAGTACAAGGATCGGTGTGACAAGTCTAAGATCTTGCCCAATT
CGTTCTGGAACAAGAACCGACGTCGTGAATGTGAGGAATTTGGAATGAGT
GTTTCGGATCTTGGCGCGTATTCAGTAGCTGAGGAAGAGGCTATGTTGTA
TAGTTTGAGCAAAGGGGATTTGGCTACTATGGAAAAACTGCGAAAGGTGT
TGCAGGGGGCATAA
back to top

protein sequence of Ggra9145.t1

>Ggra9145.t1 ID=Ggra9145.t1|Name=Ggra9145.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=288bp
MGVYGYGTSGGEIPEGYINVVLPGGRQSRILHPSYPGSVYHATKCLDQIL
FQFYQKNDSLRITDLHQGIVWGTNTAQTRRDERLINRFDYDSDYGTVLNR
FLMQAALGVPLTVYGTGGQTRAFIHIQDTARCISLAIANPPQPGAQVEIF
NQVAETHRVRDLAKLISDKTGCEVKNISNPRNESAENELDVANRKFKSLG
LEPTTLEMGLLDEVVSIAGKYKDRCDKSKILPNSFWNKNRRRECEEFGMS
VSDLGAYSVAEEEAMLYSLSKGDLATMEKLRKVLQGA*
back to top

mRNA from alignment at tig00000075_pilon:90705..91568-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9145.t1 ID=Ggra9145.t1|Name=Ggra9145.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=864bp|location=Sequence derived from alignment at tig00000075_pilon:90705..91568- (Gracilaria gracilis GNS1m male)
ATGGGTGTGTATGGGTATGGAACTTCTGGTGGCGAGATTCCGGAGGGTTA
CATCAACGTCGTACTCCCAGGAGGAAGACAATCTCGTATCTTACATCCAT
CGTATCCTGGCTCGGTGTATCATGCCACCAAATGTCTGGACCAGATTCTC
TTCCAGTTCTATCAGAAGAACGATTCTCTTCGCATCACCGATTTGCATCA
GGGCATTGTATGGGGCACCAACACTGCACAAACTCGACGCGATGAACGTC
TCATCAATCGATTTGACTACGATTCCGACTACGGAACCGTGTTGAATCGC
TTCCTCATGCAGGCTGCGCTCGGCGTTCCGCTCACGGTGTACGGAACTGG
CGGTCAGACCAGAGCGTTTATCCACATTCAAGATACCGCTAGATGCATTA
GTCTGGCCATTGCTAACCCGCCACAGCCAGGCGCGCAGGTGGAGATCTTC
AATCAAGTGGCTGAGACGCATCGCGTTCGAGATCTTGCCAAGTTGATCTC
GGACAAGACTGGCTGTGAGGTGAAGAACATTAGCAATCCGCGAAACGAAT
CGGCCGAGAATGAACTTGATGTGGCCAACCGCAAGTTTAAGAGCTTGGGA
TTGGAGCCGACTACATTGGAAATGGGGCTGCTTGATGAGGTTGTTTCGAT
TGCTGGCAAGTACAAGGATCGGTGTGACAAGTCTAAGATCTTGCCCAATT
CGTTCTGGAACAAGAACCGACGTCGTGAATGTGAGGAATTTGGAATGAGT
GTTTCGGATCTTGGCGCGTATTCAGTAGCTGAGGAAGAGGCTATGTTGTA
TAGTTTGAGCAAAGGGGATTTGGCTACTATGGAAAAACTGCGAAAGGTGT
TGCAGGGGGCATAA
back to top

Coding sequence (CDS) from alignment at tig00000075_pilon:90705..91568-

>Ggra9145.t1 ID=Ggra9145.t1|Name=Ggra9145.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=864bp|location=Sequence derived from alignment at tig00000075_pilon:90705..91568- (Gracilaria gracilis GNS1m male)
ATGGGTGTGTATGGGTATGGAACTTCTGGTGGCGAGATTCCGGAGGGTTA
CATCAACGTCGTACTCCCAGGAGGAAGACAATCTCGTATCTTACATCCAT
CGTATCCTGGCTCGGTGTATCATGCCACCAAATGTCTGGACCAGATTCTC
TTCCAGTTCTATCAGAAGAACGATTCTCTTCGCATCACCGATTTGCATCA
GGGCATTGTATGGGGCACCAACACTGCACAAACTCGACGCGATGAACGTC
TCATCAATCGATTTGACTACGATTCCGACTACGGAACCGTGTTGAATCGC
TTCCTCATGCAGGCTGCGCTCGGCGTTCCGCTCACGGTGTACGGAACTGG
CGGTCAGACCAGAGCGTTTATCCACATTCAAGATACCGCTAGATGCATTA
GTCTGGCCATTGCTAACCCGCCACAGCCAGGCGCGCAGGTGGAGATCTTC
AATCAAGTGGCTGAGACGCATCGCGTTCGAGATCTTGCCAAGTTGATCTC
GGACAAGACTGGCTGTGAGGTGAAGAACATTAGCAATCCGCGAAACGAAT
CGGCCGAGAATGAACTTGATGTGGCCAACCGCAAGTTTAAGAGCTTGGGA
TTGGAGCCGACTACATTGGAAATGGGGCTGCTTGATGAGGTTGTTTCGAT
TGCTGGCAAGTACAAGGATCGGTGTGACAAGTCTAAGATCTTGCCCAATT
CGTTCTGGAACAAGAACCGACGTCGTGAATGTGAGGAATTTGGAATGAGT
GTTTCGGATCTTGGCGCGTATTCAGTAGCTGAGGAAGAGGCTATGTTGTA
TAGTTTGAGCAAAGGGGATTTGGCTACTATGGAAAAACTGCGAAAGGTGT
TGCAGGGGGCATAA
back to top