Ggra9132.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9132.t1
Unique Name	Ggra9132.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	435

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000075_pilon	contig	tig00000075_pilon:69640..70944 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	88036.EFJ05216
PFAMs	FAD_binding_6,NAD_binding_1
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K02641
KEGG Pathway	ko00195,ko01100,map00195,map01100
GOs	GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0009055,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009719,GO:0009725,GO:0009735,GO:0009767,GO:0009814,GO:0009817,GO:0009941,GO:0009987,GO:0010033,GO:0015979,GO:0016020,GO:0016491,GO:0019684,GO:0019904,GO:0022900,GO:0031967,GO:0031975,GO:0031976,GO:0031977,GO:0031984,GO:0032991,GO:0034357,GO:0042221,GO:0042651,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0045156,GO:0045157,GO:0048046,GO:0050832,GO:0050896,GO:0051704,GO:0051707,GO:0055035,GO:0055114,GO:0097159,GO:0098542,GO:0098796,GO:0098807,GO:1901363
Evalue	2.6e-137
EggNOG OGs	COG0369@1\|root,KOG1158@2759\|Eukaryota,37JZ3@33090\|Viridiplantae,3GE7W@35493\|Streptophyta
EC	1.18.1.2
Description	Ferredoxin-NADP reductase
COG category	C
BRITE	ko00000,ko00001,ko00194,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9132	Ggra9132	Gracilaria gracilis GNS1m male	gene	tig00000075_pilon 69640..70944 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9132.t1.start1	Ggra9132.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000075_pilon 69640..69642 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9132.t1.CDS1	Ggra9132.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000075_pilon 69640..70944 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9132.t1.exon1	Ggra9132.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000075_pilon 69640..70944 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9132.t1.stop1	Ggra9132.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000075_pilon 70942..70944 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9132.t1	Ggra9132.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000075_pilon 69640..70944 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000075_pilon:69640..70944+
coding sequence from alignment at tig00000075_pilon:69640..70944+

mRNA sequence

>Ggra9132.t1 ID=Ggra9132.t1|Name=Ggra9132.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=435bp
MNGDETNPADRGAQAEAQRRRIAAHGNHKLRLPKWIAQCIAHPAPRASTH
VLHGPALIKLALAFFILRRPQPPAFIRLCFNCRCDSVHIFQPSTMYGFVS
AAPLLSAKGSHQLFAQRSSFVGATSFTVAQNVRPASIQMAAVDKKKVPIN
IFRPKDPYVASVVYNERIVGDDAPGETKHMIFNTDGNLPYLEGQSIGVIP
PGIDAKGKPHKARLYSIASTRHGDFGDGKTVSLSVKRLVYNDDDGKEVRG
VCSNHLCDLKAGDEVRISGPVGTAMLMPPDPNATIIMLATGTGVAPFRTY
MRRAFSENNSDYKFTGTMWLFLGVPTSSTLLYQEEFEEMKANYPDQVRLD
YAISREQTDPEGNKMYLQNRMQEYEEELYELFQKDNTYVYMCGLAGMEDG
IDKFMSARFEKDGRDWVQYRKEMKKARRWEVETY*

spliced messenger RNA

>Ggra9132.t1 ID=Ggra9132.t1|Name=Ggra9132.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1305bp|location=Sequence derived from alignment at tig00000075_pilon:69640..70944+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGGTGACGAAACGAACCCGGCAGATCGCGGGGCGCAGGCGGAAGC
GCAACGGAGACGCATCGCAGCTCACGGCAACCACAAATTGCGCCTTCCCA
AATGGATCGCCCAATGCATTGCCCACCCAGCGCCGCGCGCTTCGACACAC
GTGCTGCATGGCCCGGCGCTGATCAAGCTCGCTCTTGCTTTCTTCATATT
GCGCCGTCCGCAACCGCCCGCCTTCATCCGCTTGTGCTTCAACTGCCGGT
GTGACTCCGTTCACATCTTCCAGCCTTCAACCATGTACGGCTTCGTCTCT
GCTGCGCCGTTGCTCTCTGCGAAGGGCTCGCACCAACTGTTTGCCCAGCG
CTCTTCCTTCGTCGGTGCTACTTCCTTCACCGTCGCCCAAAATGTGCGTC
CTGCCTCCATTCAAATGGCCGCCGTTGACAAGAAGAAGGTTCCCATCAAC
ATCTTCCGTCCCAAGGACCCCTACGTCGCCTCCGTTGTGTACAACGAACG
CATCGTCGGTGACGACGCGCCCGGAGAGACCAAGCACATGATTTTCAACA
CCGATGGAAACCTGCCGTATCTTGAGGGCCAATCCATTGGAGTCATTCCG
CCTGGTATCGACGCCAAGGGAAAGCCGCACAAGGCTCGCTTGTACTCAAT
TGCTTCCACTCGTCATGGCGACTTTGGCGATGGCAAGACCGTTTCTTTGT
CCGTCAAGCGTCTGGTGTACAATGATGATGATGGAAAAGAGGTTCGTGGT
GTGTGCTCCAACCACCTCTGCGATCTCAAGGCCGGAGACGAGGTTAGGAT
CTCTGGACCTGTCGGAACTGCCATGCTCATGCCGCCGGACCCCAACGCAA
CCATCATCATGCTTGCAACTGGTACTGGCGTCGCTCCGTTCCGTACCTAC
ATGCGCCGTGCATTCAGTGAGAACAACTCTGACTACAAGTTCACTGGAAC
TATGTGGCTTTTCCTCGGTGTGCCCACCTCCTCCACTCTCTTGTACCAAG
AAGAATTTGAGGAGATGAAGGCCAACTACCCTGACCAGGTTCGTCTTGAC
TATGCCATCTCCCGTGAACAGACCGACCCTGAGGGTAACAAGATGTACTT
GCAAAACAGAATGCAGGAATATGAAGAAGAATTGTACGAACTGTTCCAAA
AAGATAACACTTACGTTTACATGTGCGGTTTGGCCGGTATGGAAGACGGT
ATCGACAAGTTCATGTCCGCAAGATTTGAGAAGGATGGCCGGGATTGGGT
GCAGTACCGTAAGGAGATGAAGAAGGCCCGTCGCTGGGAGGTGGAAACAT
ACTAG

protein sequence of Ggra9132.t1

>Ggra9132.t1 ID=Ggra9132.t1|Name=Ggra9132.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=435bp
MNGDETNPADRGAQAEAQRRRIAAHGNHKLRLPKWIAQCIAHPAPRASTH
VLHGPALIKLALAFFILRRPQPPAFIRLCFNCRCDSVHIFQPSTMYGFVS
AAPLLSAKGSHQLFAQRSSFVGATSFTVAQNVRPASIQMAAVDKKKVPIN
IFRPKDPYVASVVYNERIVGDDAPGETKHMIFNTDGNLPYLEGQSIGVIP
PGIDAKGKPHKARLYSIASTRHGDFGDGKTVSLSVKRLVYNDDDGKEVRG
VCSNHLCDLKAGDEVRISGPVGTAMLMPPDPNATIIMLATGTGVAPFRTY
MRRAFSENNSDYKFTGTMWLFLGVPTSSTLLYQEEFEEMKANYPDQVRLD
YAISREQTDPEGNKMYLQNRMQEYEEELYELFQKDNTYVYMCGLAGMEDG
IDKFMSARFEKDGRDWVQYRKEMKKARRWEVETY*

mRNA from alignment at tig00000075_pilon:69640..70944+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9132.t1 ID=Ggra9132.t1|Name=Ggra9132.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1305bp|location=Sequence derived from alignment at tig00000075_pilon:69640..70944+ (Gracilaria gracilis GNS1m male)
ATGAACGGTGACGAAACGAACCCGGCAGATCGCGGGGCGCAGGCGGAAGC
GCAACGGAGACGCATCGCAGCTCACGGCAACCACAAATTGCGCCTTCCCA
AATGGATCGCCCAATGCATTGCCCACCCAGCGCCGCGCGCTTCGACACAC
GTGCTGCATGGCCCGGCGCTGATCAAGCTCGCTCTTGCTTTCTTCATATT
GCGCCGTCCGCAACCGCCCGCCTTCATCCGCTTGTGCTTCAACTGCCGGT
GTGACTCCGTTCACATCTTCCAGCCTTCAACCATGTACGGCTTCGTCTCT
GCTGCGCCGTTGCTCTCTGCGAAGGGCTCGCACCAACTGTTTGCCCAGCG
CTCTTCCTTCGTCGGTGCTACTTCCTTCACCGTCGCCCAAAATGTGCGTC
CTGCCTCCATTCAAATGGCCGCCGTTGACAAGAAGAAGGTTCCCATCAAC
ATCTTCCGTCCCAAGGACCCCTACGTCGCCTCCGTTGTGTACAACGAACG
CATCGTCGGTGACGACGCGCCCGGAGAGACCAAGCACATGATTTTCAACA
CCGATGGAAACCTGCCGTATCTTGAGGGCCAATCCATTGGAGTCATTCCG
CCTGGTATCGACGCCAAGGGAAAGCCGCACAAGGCTCGCTTGTACTCAAT
TGCTTCCACTCGTCATGGCGACTTTGGCGATGGCAAGACCGTTTCTTTGT
CCGTCAAGCGTCTGGTGTACAATGATGATGATGGAAAAGAGGTTCGTGGT
GTGTGCTCCAACCACCTCTGCGATCTCAAGGCCGGAGACGAGGTTAGGAT
CTCTGGACCTGTCGGAACTGCCATGCTCATGCCGCCGGACCCCAACGCAA
CCATCATCATGCTTGCAACTGGTACTGGCGTCGCTCCGTTCCGTACCTAC
ATGCGCCGTGCATTCAGTGAGAACAACTCTGACTACAAGTTCACTGGAAC
TATGTGGCTTTTCCTCGGTGTGCCCACCTCCTCCACTCTCTTGTACCAAG
AAGAATTTGAGGAGATGAAGGCCAACTACCCTGACCAGGTTCGTCTTGAC
TATGCCATCTCCCGTGAACAGACCGACCCTGAGGGTAACAAGATGTACTT
GCAAAACAGAATGCAGGAATATGAAGAAGAATTGTACGAACTGTTCCAAA
AAGATAACACTTACGTTTACATGTGCGGTTTGGCCGGTATGGAAGACGGT
ATCGACAAGTTCATGTCCGCAAGATTTGAGAAGGATGGCCGGGATTGGGT
GCAGTACCGTAAGGAGATGAAGAAGGCCCGTCGCTGGGAGGTGGAAACAT
ACTAG

Coding sequence (CDS) from alignment at tig00000075_pilon:69640..70944+

>Ggra9132.t1 ID=Ggra9132.t1|Name=Ggra9132.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1305bp|location=Sequence derived from alignment at tig00000075_pilon:69640..70944+ (Gracilaria gracilis GNS1m male)
ATGAACGGTGACGAAACGAACCCGGCAGATCGCGGGGCGCAGGCGGAAGC
GCAACGGAGACGCATCGCAGCTCACGGCAACCACAAATTGCGCCTTCCCA
AATGGATCGCCCAATGCATTGCCCACCCAGCGCCGCGCGCTTCGACACAC
GTGCTGCATGGCCCGGCGCTGATCAAGCTCGCTCTTGCTTTCTTCATATT
GCGCCGTCCGCAACCGCCCGCCTTCATCCGCTTGTGCTTCAACTGCCGGT
GTGACTCCGTTCACATCTTCCAGCCTTCAACCATGTACGGCTTCGTCTCT
GCTGCGCCGTTGCTCTCTGCGAAGGGCTCGCACCAACTGTTTGCCCAGCG
CTCTTCCTTCGTCGGTGCTACTTCCTTCACCGTCGCCCAAAATGTGCGTC
CTGCCTCCATTCAAATGGCCGCCGTTGACAAGAAGAAGGTTCCCATCAAC
ATCTTCCGTCCCAAGGACCCCTACGTCGCCTCCGTTGTGTACAACGAACG
CATCGTCGGTGACGACGCGCCCGGAGAGACCAAGCACATGATTTTCAACA
CCGATGGAAACCTGCCGTATCTTGAGGGCCAATCCATTGGAGTCATTCCG
CCTGGTATCGACGCCAAGGGAAAGCCGCACAAGGCTCGCTTGTACTCAAT
TGCTTCCACTCGTCATGGCGACTTTGGCGATGGCAAGACCGTTTCTTTGT
CCGTCAAGCGTCTGGTGTACAATGATGATGATGGAAAAGAGGTTCGTGGT
GTGTGCTCCAACCACCTCTGCGATCTCAAGGCCGGAGACGAGGTTAGGAT
CTCTGGACCTGTCGGAACTGCCATGCTCATGCCGCCGGACCCCAACGCAA
CCATCATCATGCTTGCAACTGGTACTGGCGTCGCTCCGTTCCGTACCTAC
ATGCGCCGTGCATTCAGTGAGAACAACTCTGACTACAAGTTCACTGGAAC
TATGTGGCTTTTCCTCGGTGTGCCCACCTCCTCCACTCTCTTGTACCAAG
AAGAATTTGAGGAGATGAAGGCCAACTACCCTGACCAGGTTCGTCTTGAC
TATGCCATCTCCCGTGAACAGACCGACCCTGAGGGTAACAAGATGTACTT
GCAAAACAGAATGCAGGAATATGAAGAAGAATTGTACGAACTGTTCCAAA
AAGATAACACTTACGTTTACATGTGCGGTTTGGCCGGTATGGAAGACGGT
ATCGACAAGTTCATGTCCGCAAGATTTGAGAAGGATGGCCGGGATTGGGT
GCAGTACCGTAAGGAGATGAAGAAGGCCCGTCGCTGGGAGGTGGAAACAT
ACTAG