Ggra9130.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9130.t1
Unique NameGgra9130.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length96
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:65296..65583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4096.XP_009765305.1
PFAMsApc13p
Max annot lvl35493|Streptophyta
KEGG koko:K12456
KEGG Pathwayko04110,ko04114,ko04120,ko04914,map04110,map04114,map04120,map04914
KEGG ModuleM00389
GOsGO:0000003,GO:0000151,GO:0000152,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005680,GO:0006139,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009555,GO:0009791,GO:0009987,GO:0010152,GO:0010229,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0021700,GO:0022414,GO:0031461,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048229,GO:0048367,GO:0048608,GO:0048731,GO:0048827,GO:0048856,GO:0061458,GO:0061614,GO:0071704,GO:0090304,GO:0090567,GO:0097659,GO:0099402,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Evalue2.38e-06
EggNOG OGs2E1FN@1|root,2S8ST@2759|Eukaryota,37WUQ@33090|Viridiplantae,3GKUA@35493|Streptophyta,44M1N@71274|asterids
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9130Ggra9130Gracilaria gracilis GNS1m malegenetig00000075_pilon 65296..65583 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9130.t1.start1Ggra9130.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 65296..65298 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9130.t1.CDS1Ggra9130.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 65296..65583 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9130.t1.exon1Ggra9130.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 65296..65583 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9130.t1.stop1Ggra9130.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 65581..65583 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9130.t1Ggra9130.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 65296..65583 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9130.t1 ID=Ggra9130.t1|Name=Ggra9130.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=96bp
MDMNFSAPINQDPLLVIHIVDEKWATETLPTEDIELPPAVIPAIEEDDHG
AVDEQENEDDKWNDLGLDDFAILASETARPNGSAQPTTTPAANRH*
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spliced messenger RNA

>Ggra9130.t1 ID=Ggra9130.t1|Name=Ggra9130.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=288bp|location=Sequence derived from alignment at tig00000075_pilon:65296..65583+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATATGAACTTCAGTGCTCCAATTAATCAAGATCCTCTTCTTGTCAT
TCACATCGTGGACGAAAAATGGGCTACCGAAACGCTTCCTACCGAAGATA
TTGAACTGCCACCCGCAGTTATTCCTGCTATTgaagaagatgatcatgga
gctgttgatgagcaagagaatgaagatgaCAAGTGGAACGATTTGGGTCT
TGACGACTTTGCAATCTTAGCGTCAGAAACTGCTCGACCAAACGGTTCGG
CGCAGCCAACCACCACCCCAGCTGCAAATCGTCATTGA
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protein sequence of Ggra9130.t1

>Ggra9130.t1 ID=Ggra9130.t1|Name=Ggra9130.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=96bp
MDMNFSAPINQDPLLVIHIVDEKWATETLPTEDIELPPAVIPAIEEDDHG
AVDEQENEDDKWNDLGLDDFAILASETARPNGSAQPTTTPAANRH*
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mRNA from alignment at tig00000075_pilon:65296..65583+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9130.t1 ID=Ggra9130.t1|Name=Ggra9130.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=288bp|location=Sequence derived from alignment at tig00000075_pilon:65296..65583+ (Gracilaria gracilis GNS1m male)
ATGGATATGAACTTCAGTGCTCCAATTAATCAAGATCCTCTTCTTGTCAT
TCACATCGTGGACGAAAAATGGGCTACCGAAACGCTTCCTACCGAAGATA
TTGAACTGCCACCCGCAGTTATTCCTGCTATTgaagaagatgatcatgga
gctgttgatgagcaagagaatgaagatgaCAAGTGGAACGATTTGGGTCT
TGACGACTTTGCAATCTTAGCGTCAGAAACTGCTCGACCAAACGGTTCGG
CGCAGCCAACCACCACCCCAGCTGCAAATCGTCATTGA
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Coding sequence (CDS) from alignment at tig00000075_pilon:65296..65583+

>Ggra9130.t1 ID=Ggra9130.t1|Name=Ggra9130.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=288bp|location=Sequence derived from alignment at tig00000075_pilon:65296..65583+ (Gracilaria gracilis GNS1m male)
ATGGATATGAACTTCAGTGCTCCAATTAATCAAGATCCTCTTCTTGTCAT
TCACATCGTGGACGAAAAATGGGCTACCGAAACGCTTCCTACCGAAGATA
TTGAACTGCCACCCGCAGTTATTCCTGCTATTgaagaagatgatcatgga
gctgttgatgagcaagagaatgaagatgaCAAGTGGAACGATTTGGGTCT
TGACGACTTTGCAATCTTAGCGTCAGAAACTGCTCGACCAAACGGTTCGG
CGCAGCCAACCACCACCCCAGCTGCAAATCGTCATTGA
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