Ggra9129.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9129.t1
Unique NameGgra9129.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length296
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:63650..64537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703222.1
Preferred namemge1
PFAMsGrpE
Max annot lvl2759|Eukaryota
KEGG koko:K03687
GOsGO:0000166,GO:0000774,GO:0001405,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005759,GO:0006457,GO:0006605,GO:0006626,GO:0006790,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016226,GO:0017038,GO:0017076,GO:0019866,GO:0022607,GO:0030150,GO:0030234,GO:0030554,GO:0031090,GO:0031163,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0036094,GO:0042026,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044571,GO:0044743,GO:0045184,GO:0046907,GO:0050790,GO:0051082,GO:0051179,GO:0051186,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0060589,GO:0060590,GO:0065002,GO:0065007,GO:0065009,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0097159,GO:0098772,GO:0098796,GO:0098798,GO:0098800,GO:1901265,GO:1901363,GO:1990542
Evalue7.25e-49
EggNOG OGsCOG0576@1|root,KOG3003@2759|Eukaryota
Descriptionadenyl-nucleotide exchange factor activity
COG categoryO
BRITEko00000,ko03029,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9129Ggra9129Gracilaria gracilis GNS1m malegenetig00000075_pilon 63650..64537 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9129.t1.stop1Ggra9129.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 63650..63652 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9129.t1.CDS1Ggra9129.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 63650..64537 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9129.t1.exon1Ggra9129.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 63650..64537 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9129.t1.start1Ggra9129.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 64535..64537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9129.t1Ggra9129.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 63650..64537 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9129.t1 ID=Ggra9129.t1|Name=Ggra9129.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=296bp
MASKPSPLAFAAPASALSCPSSEFCGSVTRFRPPTTLRQSAWGNRARIVA
LGPAAAPPPPGESDENRDQAPELETESPTQPEPTAQAEAADEIAADDILN
SPSFLKKKLEIVQKELIEAQDAADQSSEAVKGEKARYVRLAADFENYRRR
SMEDLRKQDNKSTAKVCKEILGVLDNFERAIAAVKPETDREESISSSYQS
INKQLLDSLTKLKVEPVDAVGEVFDPSFHEAIQKLESDSYAEDVICQQFQ
RGYRLGDVLIRPAIVAVSTGPGPAEGEGEVEDVITEDAEEIEQPV*
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spliced messenger RNA

>Ggra9129.t1 ID=Ggra9129.t1|Name=Ggra9129.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=888bp|location=Sequence derived from alignment at tig00000075_pilon:63650..64537- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCTAAACCATCACCACTTGCTTTTGCAGCACCTGCGAGCGCCCT
GTCTTGCCCGAGTTCTGAATTTTGTGGCAGCGTTACCAGGTTTCGCCCTC
CGACGACTCTCAGGCAATCCGCATGGGGCAATAGGGCTCGCATTGTAGCG
CTTGGACCTGCGGCAGCACCGCCTCCACCCGGTGAATCTGATGAGAACCG
AGATCAAGCCCCCGAATTGGAAACCGAGTCTCCAACTCAGCCGGAGCCCA
CAGCGCAAGCTGAGGCTGCGGACGAGATCGCTGCGGACGACATTCTCAAT
TCCCCGTCCTTCTTGAAGAAAAAATTGGAAATCGTGCAGAAAGAACTGAT
CGAGGCTCAGGACGCAGCTGATCAAAGTTCCGAGGCAGTCAAAGGAGAGA
AAGCAAGGTATGTTCGATTAGCAGCAGACTTTGAAAACTACCGAAGAAGA
AGTATGGAAGATTTGAGGAAGCAGGATAACAAGTCTACAGCAAAAGTCTG
TAAGGAAATCCTAGGAGTTCTTGACAATTTTGAACGAGCGATTGCTGCTG
TGAAACCCGAAACTGATAGAGAGGAGTCAATTTCGTCCAGCTATCAGTCT
ATAAACAAGCAACTATTGGATTCGCTTACTAAGCTGAAGGTGGAGCCAGT
AGATGCTGTTGGCGAGGTGTTTGACCCATCCTTTCACGAGGCAATCCAAA
AGTTGGAGTCAGATTCGTACGCAGAAGACGTGATTTGCCAGCAATTCCAA
AGGGGATATCGCCTTGGTGACGTATTAATTCGCCCTGCAATCGTGGCAGT
GTCCACTGGACCAGGTCCAGCGGAGGGCGAAGGAGAAGTGGAGGATGTCA
TAACCGAGGATGCAGAAGAGATCGAACAGCCTGTTTAA
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protein sequence of Ggra9129.t1

>Ggra9129.t1 ID=Ggra9129.t1|Name=Ggra9129.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=296bp
MASKPSPLAFAAPASALSCPSSEFCGSVTRFRPPTTLRQSAWGNRARIVA
LGPAAAPPPPGESDENRDQAPELETESPTQPEPTAQAEAADEIAADDILN
SPSFLKKKLEIVQKELIEAQDAADQSSEAVKGEKARYVRLAADFENYRRR
SMEDLRKQDNKSTAKVCKEILGVLDNFERAIAAVKPETDREESISSSYQS
INKQLLDSLTKLKVEPVDAVGEVFDPSFHEAIQKLESDSYAEDVICQQFQ
RGYRLGDVLIRPAIVAVSTGPGPAEGEGEVEDVITEDAEEIEQPV*
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mRNA from alignment at tig00000075_pilon:63650..64537-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9129.t1 ID=Ggra9129.t1|Name=Ggra9129.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=888bp|location=Sequence derived from alignment at tig00000075_pilon:63650..64537- (Gracilaria gracilis GNS1m male)
ATGGCGTCTAAACCATCACCACTTGCTTTTGCAGCACCTGCGAGCGCCCT
GTCTTGCCCGAGTTCTGAATTTTGTGGCAGCGTTACCAGGTTTCGCCCTC
CGACGACTCTCAGGCAATCCGCATGGGGCAATAGGGCTCGCATTGTAGCG
CTTGGACCTGCGGCAGCACCGCCTCCACCCGGTGAATCTGATGAGAACCG
AGATCAAGCCCCCGAATTGGAAACCGAGTCTCCAACTCAGCCGGAGCCCA
CAGCGCAAGCTGAGGCTGCGGACGAGATCGCTGCGGACGACATTCTCAAT
TCCCCGTCCTTCTTGAAGAAAAAATTGGAAATCGTGCAGAAAGAACTGAT
CGAGGCTCAGGACGCAGCTGATCAAAGTTCCGAGGCAGTCAAAGGAGAGA
AAGCAAGGTATGTTCGATTAGCAGCAGACTTTGAAAACTACCGAAGAAGA
AGTATGGAAGATTTGAGGAAGCAGGATAACAAGTCTACAGCAAAAGTCTG
TAAGGAAATCCTAGGAGTTCTTGACAATTTTGAACGAGCGATTGCTGCTG
TGAAACCCGAAACTGATAGAGAGGAGTCAATTTCGTCCAGCTATCAGTCT
ATAAACAAGCAACTATTGGATTCGCTTACTAAGCTGAAGGTGGAGCCAGT
AGATGCTGTTGGCGAGGTGTTTGACCCATCCTTTCACGAGGCAATCCAAA
AGTTGGAGTCAGATTCGTACGCAGAAGACGTGATTTGCCAGCAATTCCAA
AGGGGATATCGCCTTGGTGACGTATTAATTCGCCCTGCAATCGTGGCAGT
GTCCACTGGACCAGGTCCAGCGGAGGGCGAAGGAGAAGTGGAGGATGTCA
TAACCGAGGATGCAGAAGAGATCGAACAGCCTGTTTAA
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Coding sequence (CDS) from alignment at tig00000075_pilon:63650..64537-

>Ggra9129.t1 ID=Ggra9129.t1|Name=Ggra9129.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=888bp|location=Sequence derived from alignment at tig00000075_pilon:63650..64537- (Gracilaria gracilis GNS1m male)
ATGGCGTCTAAACCATCACCACTTGCTTTTGCAGCACCTGCGAGCGCCCT
GTCTTGCCCGAGTTCTGAATTTTGTGGCAGCGTTACCAGGTTTCGCCCTC
CGACGACTCTCAGGCAATCCGCATGGGGCAATAGGGCTCGCATTGTAGCG
CTTGGACCTGCGGCAGCACCGCCTCCACCCGGTGAATCTGATGAGAACCG
AGATCAAGCCCCCGAATTGGAAACCGAGTCTCCAACTCAGCCGGAGCCCA
CAGCGCAAGCTGAGGCTGCGGACGAGATCGCTGCGGACGACATTCTCAAT
TCCCCGTCCTTCTTGAAGAAAAAATTGGAAATCGTGCAGAAAGAACTGAT
CGAGGCTCAGGACGCAGCTGATCAAAGTTCCGAGGCAGTCAAAGGAGAGA
AAGCAAGGTATGTTCGATTAGCAGCAGACTTTGAAAACTACCGAAGAAGA
AGTATGGAAGATTTGAGGAAGCAGGATAACAAGTCTACAGCAAAAGTCTG
TAAGGAAATCCTAGGAGTTCTTGACAATTTTGAACGAGCGATTGCTGCTG
TGAAACCCGAAACTGATAGAGAGGAGTCAATTTCGTCCAGCTATCAGTCT
ATAAACAAGCAACTATTGGATTCGCTTACTAAGCTGAAGGTGGAGCCAGT
AGATGCTGTTGGCGAGGTGTTTGACCCATCCTTTCACGAGGCAATCCAAA
AGTTGGAGTCAGATTCGTACGCAGAAGACGTGATTTGCCAGCAATTCCAA
AGGGGATATCGCCTTGGTGACGTATTAATTCGCCCTGCAATCGTGGCAGT
GTCCACTGGACCAGGTCCAGCGGAGGGCGAAGGAGAAGTGGAGGATGTCA
TAACCGAGGATGCAGAAGAGATCGAACAGCCTGTTTAA
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