Ggra9128.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9128.t1
Unique NameGgra9128.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length297
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:61422..62312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6669.EFX86465
Preferred nameEXOSC7
PFAMsRNase_PH,RNase_PH_C
Max annot lvl33208|Metazoa
KEGG koko:K12589
KEGG Pathwayko03018,map03018
KEGG ModuleM00390,M00391
GOsGO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005652,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009892,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016075,GO:0016078,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017091,GO:0019219,GO:0019222,GO:0019439,GO:0022613,GO:0031123,GO:0031125,GO:0031323,GO:0031329,GO:0031974,GO:0031981,GO:0032991,GO:0034399,GO:0034427,GO:0034470,GO:0034472,GO:0034473,GO:0034475,GO:0034476,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043487,GO:0043488,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0070013,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071035,GO:0071038,GO:0071042,GO:0071046,GO:0071047,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1903311,GO:1905354
Evalue2.04e-58
EggNOG OGsCOG2123@1|root,KOG1612@2759|Eukaryota,39T86@33154|Opisthokonta,3BEA9@33208|Metazoa,3CVBQ@33213|Bilateria,41W3T@6656|Arthropoda
DescriptionExosome complex
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9128Ggra9128Gracilaria gracilis GNS1m malegenetig00000075_pilon 61422..62312 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9128.t1.stop1Ggra9128.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 61422..61424 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9128.t1.CDS1Ggra9128.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 61422..62312 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9128.t1.exon1Ggra9128.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 61422..62312 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9128.t1.start1Ggra9128.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 62310..62312 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9128.t1Ggra9128.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 61422..62312 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9128.t1 ID=Ggra9128.t1|Name=Ggra9128.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=297bp
MQILSDAEGEYIRSGAKDGVRSDGRAMLDIRPVTLETAVLPTASGSARVR
IGKVTDILVGIKPEVVEPSQEVPDEGIISFTVECSSLASPDFVGRGGADL
SAELSQLLTRLYTSSVARELRKSLSIIEGKKCWVLHIDALVLDSGGNLFG
ALSLAVRAALRVVILPRVIVIPGEADEEDEIEVDEEDFSMLESAKVAPIA
VTLASLGDRGIYMVDCTSEEEACSKASITMGISPLGKSGGAVLAGTGGID
VDTLSSMLKDATELGKEVLEATDKFLISDMESRLSGEPVQPVGFFS*
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spliced messenger RNA

>Ggra9128.t1 ID=Ggra9128.t1|Name=Ggra9128.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=891bp|location=Sequence derived from alignment at tig00000075_pilon:61422..62312- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAATCCTATCGGACGCAGAGGGCGAGTACATTCGAAGCGGTGCGAA
AGATGGAGTCCGCAGTGATGGGCGCGCCATGTTAGATATCCGTCCAGTTA
CTCTCGAAACCGCTGTTTTGCCAACAGCGTCGGGATCGGCTAGAGTACGA
ATCGGGAAAGTTACCGACATTCTGGTTGGTATTAAACCAGAGGTTGTGGA
ACCGAGTCAAGAGGTACCCGATGAAGGGATCATATCTTTCACTGTGGAGT
GTAGTAGTTTAGCTTCTCCTGACTTTGTCGGTCGAGGAGGAGCCGATCTT
AGTGCTGAGCTCAGCCAGCTACTCACGCGTCTATATACCTCTTCAGTTGC
ACGAGAGCTGCGAAAGTCGCTGTCCATAATTGAAGGAAAGAAGTGTTGGG
TGTTGCATATAGACGCACTGGTTCTTGACAGCGGTGGTAATTTGTTTGGT
GCACTATCTCTAGCTGTCCGGGCAGCCCTGCGGGTGGTCATTCTGCCTAG
AGTGATAGTCATCCCAGGAGAGGCAGACGAGGAAGACGAGATTGAGGTTG
ACGAAGAGGATTTTAGTATGTTGGAAAGCGCTAAGGTGGCTCCAATTGCT
GTCACTCTGGCTTCCTTGGGAGACAGAGGTATTTATATGGTAGATTGCAC
TTCGGAAGAAGAAGCATGCTCTAAAGCTTCAATTACGATGGGTATTTCCC
CACTTGGAAAGTCAGGTGGGGCAGTCTTGGCTGGAACAGGAGGTATAGAT
GTTGATACCTTGTCAAGTATGTTGAAAGACGCGACTGAATTGGGAAAGGA
AGTTTTGGAAGCAACAGACAAGTTCCTGATATCTGACATGGAAAGCCGGT
TGTCGGGAGAGCCGGTCCAGCCGGTGGGATTCTTCTCGTAA
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protein sequence of Ggra9128.t1

>Ggra9128.t1 ID=Ggra9128.t1|Name=Ggra9128.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=297bp
MQILSDAEGEYIRSGAKDGVRSDGRAMLDIRPVTLETAVLPTASGSARVR
IGKVTDILVGIKPEVVEPSQEVPDEGIISFTVECSSLASPDFVGRGGADL
SAELSQLLTRLYTSSVARELRKSLSIIEGKKCWVLHIDALVLDSGGNLFG
ALSLAVRAALRVVILPRVIVIPGEADEEDEIEVDEEDFSMLESAKVAPIA
VTLASLGDRGIYMVDCTSEEEACSKASITMGISPLGKSGGAVLAGTGGID
VDTLSSMLKDATELGKEVLEATDKFLISDMESRLSGEPVQPVGFFS*
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mRNA from alignment at tig00000075_pilon:61422..62312-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9128.t1 ID=Ggra9128.t1|Name=Ggra9128.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=891bp|location=Sequence derived from alignment at tig00000075_pilon:61422..62312- (Gracilaria gracilis GNS1m male)
ATGCAAATCCTATCGGACGCAGAGGGCGAGTACATTCGAAGCGGTGCGAA
AGATGGAGTCCGCAGTGATGGGCGCGCCATGTTAGATATCCGTCCAGTTA
CTCTCGAAACCGCTGTTTTGCCAACAGCGTCGGGATCGGCTAGAGTACGA
ATCGGGAAAGTTACCGACATTCTGGTTGGTATTAAACCAGAGGTTGTGGA
ACCGAGTCAAGAGGTACCCGATGAAGGGATCATATCTTTCACTGTGGAGT
GTAGTAGTTTAGCTTCTCCTGACTTTGTCGGTCGAGGAGGAGCCGATCTT
AGTGCTGAGCTCAGCCAGCTACTCACGCGTCTATATACCTCTTCAGTTGC
ACGAGAGCTGCGAAAGTCGCTGTCCATAATTGAAGGAAAGAAGTGTTGGG
TGTTGCATATAGACGCACTGGTTCTTGACAGCGGTGGTAATTTGTTTGGT
GCACTATCTCTAGCTGTCCGGGCAGCCCTGCGGGTGGTCATTCTGCCTAG
AGTGATAGTCATCCCAGGAGAGGCAGACGAGGAAGACGAGATTGAGGTTG
ACGAAGAGGATTTTAGTATGTTGGAAAGCGCTAAGGTGGCTCCAATTGCT
GTCACTCTGGCTTCCTTGGGAGACAGAGGTATTTATATGGTAGATTGCAC
TTCGGAAGAAGAAGCATGCTCTAAAGCTTCAATTACGATGGGTATTTCCC
CACTTGGAAAGTCAGGTGGGGCAGTCTTGGCTGGAACAGGAGGTATAGAT
GTTGATACCTTGTCAAGTATGTTGAAAGACGCGACTGAATTGGGAAAGGA
AGTTTTGGAAGCAACAGACAAGTTCCTGATATCTGACATGGAAAGCCGGT
TGTCGGGAGAGCCGGTCCAGCCGGTGGGATTCTTCTCGTAA
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Coding sequence (CDS) from alignment at tig00000075_pilon:61422..62312-

>Ggra9128.t1 ID=Ggra9128.t1|Name=Ggra9128.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=891bp|location=Sequence derived from alignment at tig00000075_pilon:61422..62312- (Gracilaria gracilis GNS1m male)
ATGCAAATCCTATCGGACGCAGAGGGCGAGTACATTCGAAGCGGTGCGAA
AGATGGAGTCCGCAGTGATGGGCGCGCCATGTTAGATATCCGTCCAGTTA
CTCTCGAAACCGCTGTTTTGCCAACAGCGTCGGGATCGGCTAGAGTACGA
ATCGGGAAAGTTACCGACATTCTGGTTGGTATTAAACCAGAGGTTGTGGA
ACCGAGTCAAGAGGTACCCGATGAAGGGATCATATCTTTCACTGTGGAGT
GTAGTAGTTTAGCTTCTCCTGACTTTGTCGGTCGAGGAGGAGCCGATCTT
AGTGCTGAGCTCAGCCAGCTACTCACGCGTCTATATACCTCTTCAGTTGC
ACGAGAGCTGCGAAAGTCGCTGTCCATAATTGAAGGAAAGAAGTGTTGGG
TGTTGCATATAGACGCACTGGTTCTTGACAGCGGTGGTAATTTGTTTGGT
GCACTATCTCTAGCTGTCCGGGCAGCCCTGCGGGTGGTCATTCTGCCTAG
AGTGATAGTCATCCCAGGAGAGGCAGACGAGGAAGACGAGATTGAGGTTG
ACGAAGAGGATTTTAGTATGTTGGAAAGCGCTAAGGTGGCTCCAATTGCT
GTCACTCTGGCTTCCTTGGGAGACAGAGGTATTTATATGGTAGATTGCAC
TTCGGAAGAAGAAGCATGCTCTAAAGCTTCAATTACGATGGGTATTTCCC
CACTTGGAAAGTCAGGTGGGGCAGTCTTGGCTGGAACAGGAGGTATAGAT
GTTGATACCTTGTCAAGTATGTTGAAAGACGCGACTGAATTGGGAAAGGA
AGTTTTGGAAGCAACAGACAAGTTCCTGATATCTGACATGGAAAGCCGGT
TGTCGGGAGAGCCGGTCCAGCCGGTGGGATTCTTCTCGTAA
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