Ggra9126.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9126.t1
Unique Name	Ggra9126.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	628

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000075_pilon	contig	tig00000075_pilon:56993..58876 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMH064CT
PFAMs	DEP,DUF547
Max annot lvl	2759\|Eukaryota
Evalue	6.33e-126
EggNOG OGs	28JT7@1\|root,2QS72@2759\|Eukaryota
Description	protein disulfide oxidoreductase activity
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9126	Ggra9126	Gracilaria gracilis GNS1m male	gene	tig00000075_pilon 56993..58876 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9126.t1.stop1	Ggra9126.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000075_pilon 56993..56995 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9126.t1.CDS1	Ggra9126.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000075_pilon 56993..58876 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9126.t1.exon1	Ggra9126.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000075_pilon 56993..58876 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9126.t1.start1	Ggra9126.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000075_pilon 58874..58876 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9126.t1	Ggra9126.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000075_pilon 56993..58876 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000075_pilon:56993..58876-
coding sequence from alignment at tig00000075_pilon:56993..58876-

mRNA sequence

>Ggra9126.t1 ID=Ggra9126.t1|Name=Ggra9126.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=628bp
MYSTTGRKRKALEQVVPGVVPDRTSHFAVYSQSSAGAAANPFDNEHYPIP
DFKRVYTLMRDPKKGLPLADRRWRLSAYPRCFIGEEAVQWMVDNLSLDRK
AAVETGQKLMDAGIMHHVTHSEPFSDAYFFYRFQEDDDGNVLNMKRIWDS
TIPTRHAVVVAKDLLTRLAFLCEEYRKRILQAEASSDKLQSSTSAQMILA
SQPVTPLLDPTTRTIPTDTVSSPNLFRSLSTPRLPSSGSPLLFSPPLVRR
ASQTRTPKQKDDEVDYSSLAKSEQFRKYSLAAAELQHVQLTALNQDERLA
FFVNVYNALCLHAHVVHGHPDTLFRRFIFFRSLAYRVAGLDMSLDDVEHG
ILRGNKKPPMLKFIQQLRPSDPKCQHVLTNRDGRIHFVISAGTKSDPPIR
ILDGENVQEELDDASVEFLSCSVKVDVEKRTVTLPRIFYWYAEDFPSPEK
NLLLWVASYLPVETSHQLVSLVNDDDPLPALLYADFDWSNPEARFNASVV
RRKRRRLERERDLDDGQQDAIDLSLQMQIGDMSSILSAPQISNEDLFKNN
DSHSPVAFAGNGPNEDTQRQSIFNGVESAGARSQEDSSKMLTPDIMNRRS
QPETPTAKSGESGSSNAATTAAAASST*

spliced messenger RNA

>Ggra9126.t1 ID=Ggra9126.t1|Name=Ggra9126.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1884bp|location=Sequence derived from alignment at tig00000075_pilon:56993..58876- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATTCCACCACGGGGCGGAAGCGAAAGGCACTGGAACAAGTCGTTCC
AGGCGTCGTTCCCGACCGCACTTCCCACTTCGCCGTGTATTCCCAGTCTT
CCGCGGGCGCGGCCGCAAACCCCTTTGACAACGAGCACTACCCCATCCCG
GATTTCAAACGCGTTTACACCCTAATGCGTGACCCGAAGAAGGGGCTGCC
ACTCGCCGACCGTCGCTGGAGACTCAGCGCCTATCCCAGGTGCTTTATTG
GCGAAGAAGCCGTGCAATGGATGGTTGACAACCTCTCTTTAGACCGAAAG
GCCGCTGTGGAGACTGGACAGAAGCTCATGGACGCGGGCATCATGCACCA
CGTTACTCATTCGGAACCGTTTTCCGACGCGTACTTTTTCTACCGCTTCC
AAGAAGATGATGACGGAAACGTTCTCAACATGAAGCGAATCTGGGATTCT
ACCATTCCAACGCGCCATGCTGTCGTCGTTGCAAAGGACCTTCTCACACG
ATTGGCCTTCTTGTGTGAAGAGTATCGTAAGCGAATTCTCCAGGCCGAAG
CTAGTTCAGATAAGCTCCAGTCGTCCACATCCGCTCAAATGATTCTTGCC
TCTCAACCTGTCACGCCTCTATTAGATCCCACCACTCGTACTATCCCTAC
AGACACAGTTTCCTCGCCCAATTTGTTTCGATCGCTATCTACTCCTCGTC
TACCTTCTTCAGGGTCGCCACTGTTATTCTCACCACCTTTGGTAAGACGT
GCGTCGCAAACGAGAACCCCGAAACAAAAGGACGATGAAGTTGACTACTC
ATCTCTGGCCAAGAGCGAGCAGTTCCGCAAGTACTCTCTAGCTGCAGCAG
AGTTGCAACACGTTCAGCTTACCGCGCTGAATCAAGATGAAAGGCTTGCG
TTTTTCGTCAATGTGTACAATGCTCTATGTCTTCATGCGCACGTAGTCCA
CGGCCACCCGGACACCCTCTTTCGTCGCTTCATCTTTTTCCGCAGTCTCG
CTTACAGAGTAGCCGGCTTGGACATGTCTCTGGATGACGTCGAACATGGT
ATTCTGAGGGGAAATAAGAAACCTCCCATGCTAAAGTTTATTCAACAACT
AAGACCTTCAGACCCCAAATGCCAGCATGTCCTAACAAATCGAGATGGTC
GTATCCATTTTGTTATTTCTGCTGGCACAAAGTCTGACCCGCCCATTCGA
ATTCTTGATGGAGAGAACGTTCAAGAAGAACTAGATGATGCATCCGTTGA
GTTCCTTAGTTGCTCAGTTAAGGTCGACGTTGAGAAACGAACTGTTACGC
TTCCACGCATCTTTTACTGGTACGCTGAAGACTTTCCGAGTCCGGAAAAG
AATCTGTTGCTTTGGGTTGCTTCATATCTGCCAGTTGAAACATCCCACCA
GCTTGTCAGCCTAGTGAATGACGATGACCCGTTGCCCGCATTGTTATACG
CGGATTTTGACTGGTCAAACCCGGAAGCGAGGTTCAATGCTTCAGTCGTG
CGGAGAAAGCGTAGAAGGCTGGAGAGGGAAAGGGATCTCGATGACGGTCA
GCAAGATGCTATTGATCTGAGCTTGCAAATGCAAATTGGAGACATGTCCT
CGATATTATCTGCTCCTCAAATCAGTAACGAGGACTTATTTAAGAACAAC
GATTCGCACTCTCCAGTAGCCTTTGCGGGAAATGGACCAAATGAAGATAC
ACAAAGGCAATCTATCTTCAATGGCGTGGAAAGTGCCGGGGCTCGATCTC
AAGAAGATTCGTCTAAAATGCTGACTCCTGACATTATGAATAGAAGAAGT
CAACCAGAGACTCCAACCGCAAAGAGTGGGGAAAGTGGTTCTAGCAATGC
AGCTACGACGGCGGCCGCAGCTTCATCAACATAA

protein sequence of Ggra9126.t1

>Ggra9126.t1 ID=Ggra9126.t1|Name=Ggra9126.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=628bp
MYSTTGRKRKALEQVVPGVVPDRTSHFAVYSQSSAGAAANPFDNEHYPIP
DFKRVYTLMRDPKKGLPLADRRWRLSAYPRCFIGEEAVQWMVDNLSLDRK
AAVETGQKLMDAGIMHHVTHSEPFSDAYFFYRFQEDDDGNVLNMKRIWDS
TIPTRHAVVVAKDLLTRLAFLCEEYRKRILQAEASSDKLQSSTSAQMILA
SQPVTPLLDPTTRTIPTDTVSSPNLFRSLSTPRLPSSGSPLLFSPPLVRR
ASQTRTPKQKDDEVDYSSLAKSEQFRKYSLAAAELQHVQLTALNQDERLA
FFVNVYNALCLHAHVVHGHPDTLFRRFIFFRSLAYRVAGLDMSLDDVEHG
ILRGNKKPPMLKFIQQLRPSDPKCQHVLTNRDGRIHFVISAGTKSDPPIR
ILDGENVQEELDDASVEFLSCSVKVDVEKRTVTLPRIFYWYAEDFPSPEK
NLLLWVASYLPVETSHQLVSLVNDDDPLPALLYADFDWSNPEARFNASVV
RRKRRRLERERDLDDGQQDAIDLSLQMQIGDMSSILSAPQISNEDLFKNN
DSHSPVAFAGNGPNEDTQRQSIFNGVESAGARSQEDSSKMLTPDIMNRRS
QPETPTAKSGESGSSNAATTAAAASST*

mRNA from alignment at tig00000075_pilon:56993..58876-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9126.t1 ID=Ggra9126.t1|Name=Ggra9126.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1884bp|location=Sequence derived from alignment at tig00000075_pilon:56993..58876- (Gracilaria gracilis GNS1m male)
ATGTATTCCACCACGGGGCGGAAGCGAAAGGCACTGGAACAAGTCGTTCC
AGGCGTCGTTCCCGACCGCACTTCCCACTTCGCCGTGTATTCCCAGTCTT
CCGCGGGCGCGGCCGCAAACCCCTTTGACAACGAGCACTACCCCATCCCG
GATTTCAAACGCGTTTACACCCTAATGCGTGACCCGAAGAAGGGGCTGCC
ACTCGCCGACCGTCGCTGGAGACTCAGCGCCTATCCCAGGTGCTTTATTG
GCGAAGAAGCCGTGCAATGGATGGTTGACAACCTCTCTTTAGACCGAAAG
GCCGCTGTGGAGACTGGACAGAAGCTCATGGACGCGGGCATCATGCACCA
CGTTACTCATTCGGAACCGTTTTCCGACGCGTACTTTTTCTACCGCTTCC
AAGAAGATGATGACGGAAACGTTCTCAACATGAAGCGAATCTGGGATTCT
ACCATTCCAACGCGCCATGCTGTCGTCGTTGCAAAGGACCTTCTCACACG
ATTGGCCTTCTTGTGTGAAGAGTATCGTAAGCGAATTCTCCAGGCCGAAG
CTAGTTCAGATAAGCTCCAGTCGTCCACATCCGCTCAAATGATTCTTGCC
TCTCAACCTGTCACGCCTCTATTAGATCCCACCACTCGTACTATCCCTAC
AGACACAGTTTCCTCGCCCAATTTGTTTCGATCGCTATCTACTCCTCGTC
TACCTTCTTCAGGGTCGCCACTGTTATTCTCACCACCTTTGGTAAGACGT
GCGTCGCAAACGAGAACCCCGAAACAAAAGGACGATGAAGTTGACTACTC
ATCTCTGGCCAAGAGCGAGCAGTTCCGCAAGTACTCTCTAGCTGCAGCAG
AGTTGCAACACGTTCAGCTTACCGCGCTGAATCAAGATGAAAGGCTTGCG
TTTTTCGTCAATGTGTACAATGCTCTATGTCTTCATGCGCACGTAGTCCA
CGGCCACCCGGACACCCTCTTTCGTCGCTTCATCTTTTTCCGCAGTCTCG
CTTACAGAGTAGCCGGCTTGGACATGTCTCTGGATGACGTCGAACATGGT
ATTCTGAGGGGAAATAAGAAACCTCCCATGCTAAAGTTTATTCAACAACT
AAGACCTTCAGACCCCAAATGCCAGCATGTCCTAACAAATCGAGATGGTC
GTATCCATTTTGTTATTTCTGCTGGCACAAAGTCTGACCCGCCCATTCGA
ATTCTTGATGGAGAGAACGTTCAAGAAGAACTAGATGATGCATCCGTTGA
GTTCCTTAGTTGCTCAGTTAAGGTCGACGTTGAGAAACGAACTGTTACGC
TTCCACGCATCTTTTACTGGTACGCTGAAGACTTTCCGAGTCCGGAAAAG
AATCTGTTGCTTTGGGTTGCTTCATATCTGCCAGTTGAAACATCCCACCA
GCTTGTCAGCCTAGTGAATGACGATGACCCGTTGCCCGCATTGTTATACG
CGGATTTTGACTGGTCAAACCCGGAAGCGAGGTTCAATGCTTCAGTCGTG
CGGAGAAAGCGTAGAAGGCTGGAGAGGGAAAGGGATCTCGATGACGGTCA
GCAAGATGCTATTGATCTGAGCTTGCAAATGCAAATTGGAGACATGTCCT
CGATATTATCTGCTCCTCAAATCAGTAACGAGGACTTATTTAAGAACAAC
GATTCGCACTCTCCAGTAGCCTTTGCGGGAAATGGACCAAATGAAGATAC
ACAAAGGCAATCTATCTTCAATGGCGTGGAAAGTGCCGGGGCTCGATCTC
AAGAAGATTCGTCTAAAATGCTGACTCCTGACATTATGAATAGAAGAAGT
CAACCAGAGACTCCAACCGCAAAGAGTGGGGAAAGTGGTTCTAGCAATGC
AGCTACGACGGCGGCCGCAGCTTCATCAACATAA

Coding sequence (CDS) from alignment at tig00000075_pilon:56993..58876-

>Ggra9126.t1 ID=Ggra9126.t1|Name=Ggra9126.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1884bp|location=Sequence derived from alignment at tig00000075_pilon:56993..58876- (Gracilaria gracilis GNS1m male)
ATGTATTCCACCACGGGGCGGAAGCGAAAGGCACTGGAACAAGTCGTTCC
AGGCGTCGTTCCCGACCGCACTTCCCACTTCGCCGTGTATTCCCAGTCTT
CCGCGGGCGCGGCCGCAAACCCCTTTGACAACGAGCACTACCCCATCCCG
GATTTCAAACGCGTTTACACCCTAATGCGTGACCCGAAGAAGGGGCTGCC
ACTCGCCGACCGTCGCTGGAGACTCAGCGCCTATCCCAGGTGCTTTATTG
GCGAAGAAGCCGTGCAATGGATGGTTGACAACCTCTCTTTAGACCGAAAG
GCCGCTGTGGAGACTGGACAGAAGCTCATGGACGCGGGCATCATGCACCA
CGTTACTCATTCGGAACCGTTTTCCGACGCGTACTTTTTCTACCGCTTCC
AAGAAGATGATGACGGAAACGTTCTCAACATGAAGCGAATCTGGGATTCT
ACCATTCCAACGCGCCATGCTGTCGTCGTTGCAAAGGACCTTCTCACACG
ATTGGCCTTCTTGTGTGAAGAGTATCGTAAGCGAATTCTCCAGGCCGAAG
CTAGTTCAGATAAGCTCCAGTCGTCCACATCCGCTCAAATGATTCTTGCC
TCTCAACCTGTCACGCCTCTATTAGATCCCACCACTCGTACTATCCCTAC
AGACACAGTTTCCTCGCCCAATTTGTTTCGATCGCTATCTACTCCTCGTC
TACCTTCTTCAGGGTCGCCACTGTTATTCTCACCACCTTTGGTAAGACGT
GCGTCGCAAACGAGAACCCCGAAACAAAAGGACGATGAAGTTGACTACTC
ATCTCTGGCCAAGAGCGAGCAGTTCCGCAAGTACTCTCTAGCTGCAGCAG
AGTTGCAACACGTTCAGCTTACCGCGCTGAATCAAGATGAAAGGCTTGCG
TTTTTCGTCAATGTGTACAATGCTCTATGTCTTCATGCGCACGTAGTCCA
CGGCCACCCGGACACCCTCTTTCGTCGCTTCATCTTTTTCCGCAGTCTCG
CTTACAGAGTAGCCGGCTTGGACATGTCTCTGGATGACGTCGAACATGGT
ATTCTGAGGGGAAATAAGAAACCTCCCATGCTAAAGTTTATTCAACAACT
AAGACCTTCAGACCCCAAATGCCAGCATGTCCTAACAAATCGAGATGGTC
GTATCCATTTTGTTATTTCTGCTGGCACAAAGTCTGACCCGCCCATTCGA
ATTCTTGATGGAGAGAACGTTCAAGAAGAACTAGATGATGCATCCGTTGA
GTTCCTTAGTTGCTCAGTTAAGGTCGACGTTGAGAAACGAACTGTTACGC
TTCCACGCATCTTTTACTGGTACGCTGAAGACTTTCCGAGTCCGGAAAAG
AATCTGTTGCTTTGGGTTGCTTCATATCTGCCAGTTGAAACATCCCACCA
GCTTGTCAGCCTAGTGAATGACGATGACCCGTTGCCCGCATTGTTATACG
CGGATTTTGACTGGTCAAACCCGGAAGCGAGGTTCAATGCTTCAGTCGTG
CGGAGAAAGCGTAGAAGGCTGGAGAGGGAAAGGGATCTCGATGACGGTCA
GCAAGATGCTATTGATCTGAGCTTGCAAATGCAAATTGGAGACATGTCCT
CGATATTATCTGCTCCTCAAATCAGTAACGAGGACTTATTTAAGAACAAC
GATTCGCACTCTCCAGTAGCCTTTGCGGGAAATGGACCAAATGAAGATAC
ACAAAGGCAATCTATCTTCAATGGCGTGGAAAGTGCCGGGGCTCGATCTC
AAGAAGATTCGTCTAAAATGCTGACTCCTGACATTATGAATAGAAGAAGT
CAACCAGAGACTCCAACCGCAAAGAGTGGGGAAAGTGGTTCTAGCAATGC
AGCTACGACGGCGGCCGCAGCTTCATCAACATAA