Ggra9121.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9121.t1
Unique NameGgra9121.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length185
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:44942..45496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45351.EDO37509
Preferred nameNIP7
PFAMsUPF0113
Max annot lvl33208|Metazoa
KEGG koko:K07565
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0008150,GO:0022613,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0042254,GO:0042273,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071840,GO:1990904
Evalue3.79e-85
EggNOG OGsCOG1374@1|root,KOG3492@2759|Eukaryota,38ER8@33154|Opisthokonta,3BK93@33208|Metazoa
Description60S ribosome subunit biogenesis protein NIP7 homolog
COG categoryJ
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9121Ggra9121Gracilaria gracilis GNS1m malegenetig00000075_pilon 44942..45496 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9121.t1.start1Ggra9121.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 44942..44944 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9121.t1.CDS1Ggra9121.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 44942..45496 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9121.t1.exon1Ggra9121.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 44942..45496 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9121.t1.stop1Ggra9121.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 45494..45496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9121.t1Ggra9121.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 44942..45496 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9121.t1 ID=Ggra9121.t1|Name=Ggra9121.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=185bp
MRPLTEEETVQVFEKLAKFIGPNIKQLIDSPDETHCFRLQNDRVYYVSEK
VMRLATNVARDNLASLGVCIGKFTHHKNFHVHVSCLDYLGKYARHKVWIK
PSSEMSFLYGNHVLKAGLGRITENTENGAGVVVYNMSDTPIGFGLAARST
MDCRKAAPTDIVVLNQADLGMYLRSEERTPASAL*
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spliced messenger RNA

>Ggra9121.t1 ID=Ggra9121.t1|Name=Ggra9121.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=555bp|location=Sequence derived from alignment at tig00000075_pilon:44942..45496+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCCACTTACCGAAGAAGAAACCGTGCAAGTGTTTGAGAAACTTGC
AAAATTCATAGGGCCAAACATCAAGCAACTGATCGATTCTCCGGATGAAA
CGCATTGTTTTAGACTTCAGAACGACCGGGTTTATTATGTCTCAGAGAAG
GTAATGAGATTAGCAACCAACGTCGCCCGCGATAATCTTGCTTCACTCGG
AGTTTGTATTGGCAAGTTTACTCATCATAAGAACTTCCACGTGCATGTAA
GCTGCCTGGATTATCTAGGGAAATATGCTAGGCATAAAGTATGGATCAAA
CCGTCCTCAGAAATGTCTTTTCTGTACGGGAATCACGTCCTTAAAGCTGG
GTTGGGGCGTATTACGGAAAACACCGAGAATGGTGCTGGTGTTGTAGTGT
ACAACATGTCAGACACACCAATTGGTTTTGGTTTGGCAGCAAGAAGTACA
ATGGATTGTCGCAAAGCTGCGCCTACAGACATTGTCGTTTTGAATCAAGC
TGATTTAGGCATGTATCTCCGTTCTGAAGAGAGAACCCCGGCATCGGCAC
TTTAA
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protein sequence of Ggra9121.t1

>Ggra9121.t1 ID=Ggra9121.t1|Name=Ggra9121.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=185bp
MRPLTEEETVQVFEKLAKFIGPNIKQLIDSPDETHCFRLQNDRVYYVSEK
VMRLATNVARDNLASLGVCIGKFTHHKNFHVHVSCLDYLGKYARHKVWIK
PSSEMSFLYGNHVLKAGLGRITENTENGAGVVVYNMSDTPIGFGLAARST
MDCRKAAPTDIVVLNQADLGMYLRSEERTPASAL*
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mRNA from alignment at tig00000075_pilon:44942..45496+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9121.t1 ID=Ggra9121.t1|Name=Ggra9121.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=555bp|location=Sequence derived from alignment at tig00000075_pilon:44942..45496+ (Gracilaria gracilis GNS1m male)
ATGCGCCCACTTACCGAAGAAGAAACCGTGCAAGTGTTTGAGAAACTTGC
AAAATTCATAGGGCCAAACATCAAGCAACTGATCGATTCTCCGGATGAAA
CGCATTGTTTTAGACTTCAGAACGACCGGGTTTATTATGTCTCAGAGAAG
GTAATGAGATTAGCAACCAACGTCGCCCGCGATAATCTTGCTTCACTCGG
AGTTTGTATTGGCAAGTTTACTCATCATAAGAACTTCCACGTGCATGTAA
GCTGCCTGGATTATCTAGGGAAATATGCTAGGCATAAAGTATGGATCAAA
CCGTCCTCAGAAATGTCTTTTCTGTACGGGAATCACGTCCTTAAAGCTGG
GTTGGGGCGTATTACGGAAAACACCGAGAATGGTGCTGGTGTTGTAGTGT
ACAACATGTCAGACACACCAATTGGTTTTGGTTTGGCAGCAAGAAGTACA
ATGGATTGTCGCAAAGCTGCGCCTACAGACATTGTCGTTTTGAATCAAGC
TGATTTAGGCATGTATCTCCGTTCTGAAGAGAGAACCCCGGCATCGGCAC
TTTAA
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Coding sequence (CDS) from alignment at tig00000075_pilon:44942..45496+

>Ggra9121.t1 ID=Ggra9121.t1|Name=Ggra9121.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=555bp|location=Sequence derived from alignment at tig00000075_pilon:44942..45496+ (Gracilaria gracilis GNS1m male)
ATGCGCCCACTTACCGAAGAAGAAACCGTGCAAGTGTTTGAGAAACTTGC
AAAATTCATAGGGCCAAACATCAAGCAACTGATCGATTCTCCGGATGAAA
CGCATTGTTTTAGACTTCAGAACGACCGGGTTTATTATGTCTCAGAGAAG
GTAATGAGATTAGCAACCAACGTCGCCCGCGATAATCTTGCTTCACTCGG
AGTTTGTATTGGCAAGTTTACTCATCATAAGAACTTCCACGTGCATGTAA
GCTGCCTGGATTATCTAGGGAAATATGCTAGGCATAAAGTATGGATCAAA
CCGTCCTCAGAAATGTCTTTTCTGTACGGGAATCACGTCCTTAAAGCTGG
GTTGGGGCGTATTACGGAAAACACCGAGAATGGTGCTGGTGTTGTAGTGT
ACAACATGTCAGACACACCAATTGGTTTTGGTTTGGCAGCAAGAAGTACA
ATGGATTGTCGCAAAGCTGCGCCTACAGACATTGTCGTTTTGAATCAAGC
TGATTTAGGCATGTATCTCCGTTCTGAAGAGAGAACCCCGGCATCGGCAC
TTTAA
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