Ggra9119.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9119.t1
Unique NameGgra9119.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length246
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:32796..33533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX53788
Preferred nameEIF6
PFAMseIF-6
Max annot lvl2759|Eukaryota
KEGG koko:K03264,ko:K03440
KEGG TC1.A.6.1.4,1.A.6.2,1.A.6.4,1.A.6.5
KEGG Pathwayko03008,map03008
GOsGO:0000003,GO:0000054,GO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0001101,GO:0002682,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005638,GO:0005652,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005856,GO:0005882,GO:0006109,GO:0006110,GO:0006139,GO:0006140,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007275,GO:0008104,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009737,GO:0009790,GO:0009791,GO:0009793,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010033,GO:0010154,GO:0010243,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010565,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016072,GO:0016441,GO:0016458,GO:0017148,GO:0019216,GO:0019217,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030684,GO:0030687,GO:0030808,GO:0030811,GO:0031047,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031503,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0032868,GO:0032870,GO:0032991,GO:0033036,GO:0033750,GO:0033993,GO:0034248,GO:0034249,GO:0034250,GO:0034399,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0035194,GO:0035195,GO:0035278,GO:0040029,GO:0040033,GO:0042221,GO:0042254,GO:0042255,GO:0042256,GO:0042273,GO:0042304,GO:0042325,GO:0042886,GO:0043021,GO:0043022,GO:0043023,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043467,GO:0043470,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045111,GO:0045184,GO:0045595,GO:0045637,GO:0045652,GO:0045727,GO:0045974,GO:0046483,GO:0046890,GO:0046907,GO:0048316,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051193,GO:0051196,GO:0051234,GO:0051236,GO:0051239,GO:0051246,GO:0051247,GO:0051248,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051716,GO:0060255,GO:0061458,GO:0062012,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070887,GO:0070925,GO:0071166,GO:0071215,GO:0071229,GO:0071310,GO:0071396,GO:0071426,GO:0071428,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097305,GO:0097306,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:1900371,GO:1900542,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:1901701,GO:1902626,GO:1903578,GO:1903706,GO:1990904,GO:2000026,GO:2000112,GO:2000113,GO:2000377,GO:2001169
Evalue8.6e-136
EggNOG OGsCOG1976@1|root,KOG3185@2759|Eukaryota
Descriptionmature ribosome assembly
COG categoryJ
BRITEko00000,ko00001,ko03009,ko03012,ko04040
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9119Ggra9119Gracilaria gracilis GNS1m malegenetig00000075_pilon 32796..33533 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9119.t1.start1Ggra9119.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 32796..32798 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9119.t1.CDS1Ggra9119.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 32796..33533 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9119.t1.exon1Ggra9119.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 32796..33533 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9119.t1.stop1Ggra9119.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 33531..33533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9119.t1Ggra9119.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 32796..33533 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9119.t1 ID=Ggra9119.t1|Name=Ggra9119.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=246bp
MAMRCHFENSNEVGVFSMLTNSYCLVASGASENFYSVFEAELADHIPIVH
ASIAGIRIIGSLCAGNDKGLLLPNTTTDQEMQHIKNSLPDKVVVQRCEER
LSALGNCIATNDYVTLAHADLDRETEEIIADVLGTEVFRQSIAGEVLVGS
YCTFTNQGGLLHPMTSIEDQDELSSLLQIPLVAGTVNRGSEVVGSGMVVN
DWAAFCGSDTTSTELQVIETIFKLKDAQPSDLVAKIKGSLIDNLS*
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spliced messenger RNA

>Ggra9119.t1 ID=Ggra9119.t1|Name=Ggra9119.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=738bp|location=Sequence derived from alignment at tig00000075_pilon:32796..33533+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTATGCGCTGCCATTTTGAGAACAGCAACGAGGTAGGGGTATTCTC
TATGCTCACCAACTCCTACTGCCTTGTCGCCTCTGGTGCTTCAGAAAACT
TTTATTCAGTCTTTGAAGCAGAACTCGCCGATCATATTCCAATCGTTCAT
GCTTCCATTGCCGGTATACGCATCATAGGCAGTCTTTGTGCTGGAAATGA
CAAGGGTTTATTACTACCAAACACAACTACAGATCAGGAGATGCAACATA
TCAAGAACTCGTTACCCGACAAAGTGGTCGTTCAACGCTGCGAAGAACGG
CTTTCAGCGCTTGGAAATTGTATTGCTACCAATGATTATGTAACTCTAGC
ACATGCAGATTTGGATCGGGAAACCGAGGAAATTATTGCCGATGTGTTGG
GCACCGAAGTGTTTCGGCAATCTATTGCAGGAGAAGTTTTGGTAGGCTCA
TATTGCACATTCACGAACCAAGGTGGACTCTTGCATCCTATGACTTCAAT
AGAAGATCAAGATGAACTTTCGAGCTTGTTGCAGATTCCGCTTGTGGCAG
GCACCGTTAACCGAGGTAGTGAAGTAGTTGGTTCAGGAATGGTTGTCAAT
GACTGGGCTGCCTTTTGTGGGTCGGACACTACGTCAACAGAGCTTCAGGT
CATCGAGACTATCTTCAAGCTCAAGGACGCCCAACCATCAGATCTTGTTG
CCAAAATCAAAGGATCACTTATCGACAATCTTTCGTAG
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protein sequence of Ggra9119.t1

>Ggra9119.t1 ID=Ggra9119.t1|Name=Ggra9119.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=246bp
MAMRCHFENSNEVGVFSMLTNSYCLVASGASENFYSVFEAELADHIPIVH
ASIAGIRIIGSLCAGNDKGLLLPNTTTDQEMQHIKNSLPDKVVVQRCEER
LSALGNCIATNDYVTLAHADLDRETEEIIADVLGTEVFRQSIAGEVLVGS
YCTFTNQGGLLHPMTSIEDQDELSSLLQIPLVAGTVNRGSEVVGSGMVVN
DWAAFCGSDTTSTELQVIETIFKLKDAQPSDLVAKIKGSLIDNLS*
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mRNA from alignment at tig00000075_pilon:32796..33533+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9119.t1 ID=Ggra9119.t1|Name=Ggra9119.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=738bp|location=Sequence derived from alignment at tig00000075_pilon:32796..33533+ (Gracilaria gracilis GNS1m male)
ATGGCTATGCGCTGCCATTTTGAGAACAGCAACGAGGTAGGGGTATTCTC
TATGCTCACCAACTCCTACTGCCTTGTCGCCTCTGGTGCTTCAGAAAACT
TTTATTCAGTCTTTGAAGCAGAACTCGCCGATCATATTCCAATCGTTCAT
GCTTCCATTGCCGGTATACGCATCATAGGCAGTCTTTGTGCTGGAAATGA
CAAGGGTTTATTACTACCAAACACAACTACAGATCAGGAGATGCAACATA
TCAAGAACTCGTTACCCGACAAAGTGGTCGTTCAACGCTGCGAAGAACGG
CTTTCAGCGCTTGGAAATTGTATTGCTACCAATGATTATGTAACTCTAGC
ACATGCAGATTTGGATCGGGAAACCGAGGAAATTATTGCCGATGTGTTGG
GCACCGAAGTGTTTCGGCAATCTATTGCAGGAGAAGTTTTGGTAGGCTCA
TATTGCACATTCACGAACCAAGGTGGACTCTTGCATCCTATGACTTCAAT
AGAAGATCAAGATGAACTTTCGAGCTTGTTGCAGATTCCGCTTGTGGCAG
GCACCGTTAACCGAGGTAGTGAAGTAGTTGGTTCAGGAATGGTTGTCAAT
GACTGGGCTGCCTTTTGTGGGTCGGACACTACGTCAACAGAGCTTCAGGT
CATCGAGACTATCTTCAAGCTCAAGGACGCCCAACCATCAGATCTTGTTG
CCAAAATCAAAGGATCACTTATCGACAATCTTTCGTAG
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Coding sequence (CDS) from alignment at tig00000075_pilon:32796..33533+

>Ggra9119.t1 ID=Ggra9119.t1|Name=Ggra9119.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=738bp|location=Sequence derived from alignment at tig00000075_pilon:32796..33533+ (Gracilaria gracilis GNS1m male)
ATGGCTATGCGCTGCCATTTTGAGAACAGCAACGAGGTAGGGGTATTCTC
TATGCTCACCAACTCCTACTGCCTTGTCGCCTCTGGTGCTTCAGAAAACT
TTTATTCAGTCTTTGAAGCAGAACTCGCCGATCATATTCCAATCGTTCAT
GCTTCCATTGCCGGTATACGCATCATAGGCAGTCTTTGTGCTGGAAATGA
CAAGGGTTTATTACTACCAAACACAACTACAGATCAGGAGATGCAACATA
TCAAGAACTCGTTACCCGACAAAGTGGTCGTTCAACGCTGCGAAGAACGG
CTTTCAGCGCTTGGAAATTGTATTGCTACCAATGATTATGTAACTCTAGC
ACATGCAGATTTGGATCGGGAAACCGAGGAAATTATTGCCGATGTGTTGG
GCACCGAAGTGTTTCGGCAATCTATTGCAGGAGAAGTTTTGGTAGGCTCA
TATTGCACATTCACGAACCAAGGTGGACTCTTGCATCCTATGACTTCAAT
AGAAGATCAAGATGAACTTTCGAGCTTGTTGCAGATTCCGCTTGTGGCAG
GCACCGTTAACCGAGGTAGTGAAGTAGTTGGTTCAGGAATGGTTGTCAAT
GACTGGGCTGCCTTTTGTGGGTCGGACACTACGTCAACAGAGCTTCAGGT
CATCGAGACTATCTTCAAGCTCAAGGACGCCCAACCATCAGATCTTGTTG
CCAAAATCAAAGGATCACTTATCGACAATCTTTCGTAG
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