Ggra9117.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9117.t1
Unique NameGgra9117.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length345
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:27427..28461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog365528.KB891188_gene3548
PFAMsPhage_int_SAM_1,Phage_integrase
Max annot lvl201174|Actinobacteria
Evalue7.15e-06
EggNOG OGsCOG4974@1|root,COG4974@2|Bacteria,2IBWD@201174|Actinobacteria,4EVIA@85013|Frankiales
DescriptionBelongs to the 'phage' integrase family
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9117Ggra9117Gracilaria gracilis GNS1m malegenetig00000075_pilon 27427..28461 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9117.t1.stop1Ggra9117.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 27427..27429 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9117.t1.CDS1Ggra9117.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 27427..28461 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9117.t1.exon1Ggra9117.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 27427..28461 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9117.t1.start1Ggra9117.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 28459..28461 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9117.t1Ggra9117.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 27427..28461 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9117.t1 ID=Ggra9117.t1|Name=Ggra9117.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=345bp
MGGVRGSLGPQRSSSSVSTQGFNHADTDEVAPDRITGPTADTQMETAAVV
LDRTSDGLNSRRIVNATRPRLGRPEEPQFSLARAPTGNQSLTMQMLAAGR
LRESAASSAAMHRSARLLAEQGWAPRTSRSRDTQWRTYTAFCQSDNRNPL
PVTEAHLAPIIGWVTEEREAGRRNIGSSSLPQYLSAIRQRHLAALGSEVP
PFPFISHLLLAHRRWEEATHPQPTVRCGLSAAQMRQIWQLGMTSTVLRTV
RDTAMCLFAYSFNGLRESSVCSMQFADCELHSNALTCRLLVVKGKAASTV
PLVRFTSNVEPSPLALWKRWMTIRPPHKRLFALADEPQQWTPRT*
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spliced messenger RNA

>Ggra9117.t1 ID=Ggra9117.t1|Name=Ggra9117.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1035bp|location=Sequence derived from alignment at tig00000075_pilon:27427..28461- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGGAGTTAGAGGCAGTTTGGGACCCCAACGAAGTTCGTCTTCTGT
GTCCACCCAAGGATTTAATCACGCCGACACTGATGAAGTTGCGCCGGACA
GGATCACCGGCCCTACTGCTGATACCCAAATGGAAACGGCAGCCGTGGTA
CTGGACCGCACTTCGGATGGCCTCAACAGTCGAAGAATTGTCAACGCCAC
CAGACCACGTTTGGGACGCCCAGAGGAGCCTCAATTCTCGCTGGCGCGTG
CTCCTACTGGAAATCAATCTCTAACTATGCAGATGCTGGCTGCTGGTCGC
CTTAGAGAAAGCGCGGCTTCCAGCGCTGCTATGCACCGCTCTGCCCGATT
GCTAGCGGAGCAAGGTTGGGCTCCGCGTACAAGCAGATCCCGTGATACCC
AATGGCGCACTTACACTGCTTTCTGTCAATCGGACAATCGCAACCCTCTT
CCCGTTACTGAAGCTCACTTGGCTCCTATTATTGGATGGGTGACTGAAGA
ACGAGAAGCTGGTCGTCGTAACATTGGTAGCTCCTCTCTGCCGCAGTATC
TTTCTGCAATACGACAACGTCATCTTGCAGCTTTAGGCAGCGAGGTACCG
CCGTTCCCTTTCATTTCGCATTTGCTTCTAGCGCACCGTCGATGGGAAGA
AGCTACTCACCCACAACCAACTGTGCGTTGTGGGCTGAGTGCAGCGCAGA
TGCGCCAGATTTGGCAACTTGGCATGACTTCCACAGTTCTCAGAACGGTA
CGTGACACTGCTATGTGTCTCTTTGCCTACAGTTTTAATGGTTTGAGGGA
GAGTTCCGTCTGTTCTATGCAGTTCGCGGACTGCGAATTACATTCAAACG
CCCTGACATGCCGCCTCCTGGTGGTGAAAGGGAAGGCAGCAAGCACTGTT
CCGCTTGTGCGATTTACTTCCAATGTTGAACCTTCCCCCCTAGCGCTATG
GAAACGATGGATGACAATACGCCCACCGCATAAGCGACTATTTGCACTGG
CTGATGAGCCCCAACAATGGACACCTCGCACCTGA
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protein sequence of Ggra9117.t1

>Ggra9117.t1 ID=Ggra9117.t1|Name=Ggra9117.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=345bp
MGGVRGSLGPQRSSSSVSTQGFNHADTDEVAPDRITGPTADTQMETAAVV
LDRTSDGLNSRRIVNATRPRLGRPEEPQFSLARAPTGNQSLTMQMLAAGR
LRESAASSAAMHRSARLLAEQGWAPRTSRSRDTQWRTYTAFCQSDNRNPL
PVTEAHLAPIIGWVTEEREAGRRNIGSSSLPQYLSAIRQRHLAALGSEVP
PFPFISHLLLAHRRWEEATHPQPTVRCGLSAAQMRQIWQLGMTSTVLRTV
RDTAMCLFAYSFNGLRESSVCSMQFADCELHSNALTCRLLVVKGKAASTV
PLVRFTSNVEPSPLALWKRWMTIRPPHKRLFALADEPQQWTPRT*
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mRNA from alignment at tig00000075_pilon:27427..28461-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9117.t1 ID=Ggra9117.t1|Name=Ggra9117.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1035bp|location=Sequence derived from alignment at tig00000075_pilon:27427..28461- (Gracilaria gracilis GNS1m male)
ATGGGCGGAGTTAGAGGCAGTTTGGGACCCCAACGAAGTTCGTCTTCTGT
GTCCACCCAAGGATTTAATCACGCCGACACTGATGAAGTTGCGCCGGACA
GGATCACCGGCCCTACTGCTGATACCCAAATGGAAACGGCAGCCGTGGTA
CTGGACCGCACTTCGGATGGCCTCAACAGTCGAAGAATTGTCAACGCCAC
CAGACCACGTTTGGGACGCCCAGAGGAGCCTCAATTCTCGCTGGCGCGTG
CTCCTACTGGAAATCAATCTCTAACTATGCAGATGCTGGCTGCTGGTCGC
CTTAGAGAAAGCGCGGCTTCCAGCGCTGCTATGCACCGCTCTGCCCGATT
GCTAGCGGAGCAAGGTTGGGCTCCGCGTACAAGCAGATCCCGTGATACCC
AATGGCGCACTTACACTGCTTTCTGTCAATCGGACAATCGCAACCCTCTT
CCCGTTACTGAAGCTCACTTGGCTCCTATTATTGGATGGGTGACTGAAGA
ACGAGAAGCTGGTCGTCGTAACATTGGTAGCTCCTCTCTGCCGCAGTATC
TTTCTGCAATACGACAACGTCATCTTGCAGCTTTAGGCAGCGAGGTACCG
CCGTTCCCTTTCATTTCGCATTTGCTTCTAGCGCACCGTCGATGGGAAGA
AGCTACTCACCCACAACCAACTGTGCGTTGTGGGCTGAGTGCAGCGCAGA
TGCGCCAGATTTGGCAACTTGGCATGACTTCCACAGTTCTCAGAACGGTA
CGTGACACTGCTATGTGTCTCTTTGCCTACAGTTTTAATGGTTTGAGGGA
GAGTTCCGTCTGTTCTATGCAGTTCGCGGACTGCGAATTACATTCAAACG
CCCTGACATGCCGCCTCCTGGTGGTGAAAGGGAAGGCAGCAAGCACTGTT
CCGCTTGTGCGATTTACTTCCAATGTTGAACCTTCCCCCCTAGCGCTATG
GAAACGATGGATGACAATACGCCCACCGCATAAGCGACTATTTGCACTGG
CTGATGAGCCCCAACAATGGACACCTCGCACCTGA
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Coding sequence (CDS) from alignment at tig00000075_pilon:27427..28461-

>Ggra9117.t1 ID=Ggra9117.t1|Name=Ggra9117.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1035bp|location=Sequence derived from alignment at tig00000075_pilon:27427..28461- (Gracilaria gracilis GNS1m male)
ATGGGCGGAGTTAGAGGCAGTTTGGGACCCCAACGAAGTTCGTCTTCTGT
GTCCACCCAAGGATTTAATCACGCCGACACTGATGAAGTTGCGCCGGACA
GGATCACCGGCCCTACTGCTGATACCCAAATGGAAACGGCAGCCGTGGTA
CTGGACCGCACTTCGGATGGCCTCAACAGTCGAAGAATTGTCAACGCCAC
CAGACCACGTTTGGGACGCCCAGAGGAGCCTCAATTCTCGCTGGCGCGTG
CTCCTACTGGAAATCAATCTCTAACTATGCAGATGCTGGCTGCTGGTCGC
CTTAGAGAAAGCGCGGCTTCCAGCGCTGCTATGCACCGCTCTGCCCGATT
GCTAGCGGAGCAAGGTTGGGCTCCGCGTACAAGCAGATCCCGTGATACCC
AATGGCGCACTTACACTGCTTTCTGTCAATCGGACAATCGCAACCCTCTT
CCCGTTACTGAAGCTCACTTGGCTCCTATTATTGGATGGGTGACTGAAGA
ACGAGAAGCTGGTCGTCGTAACATTGGTAGCTCCTCTCTGCCGCAGTATC
TTTCTGCAATACGACAACGTCATCTTGCAGCTTTAGGCAGCGAGGTACCG
CCGTTCCCTTTCATTTCGCATTTGCTTCTAGCGCACCGTCGATGGGAAGA
AGCTACTCACCCACAACCAACTGTGCGTTGTGGGCTGAGTGCAGCGCAGA
TGCGCCAGATTTGGCAACTTGGCATGACTTCCACAGTTCTCAGAACGGTA
CGTGACACTGCTATGTGTCTCTTTGCCTACAGTTTTAATGGTTTGAGGGA
GAGTTCCGTCTGTTCTATGCAGTTCGCGGACTGCGAATTACATTCAAACG
CCCTGACATGCCGCCTCCTGGTGGTGAAAGGGAAGGCAGCAAGCACTGTT
CCGCTTGTGCGATTTACTTCCAATGTTGAACCTTCCCCCCTAGCGCTATG
GAAACGATGGATGACAATACGCCCACCGCATAAGCGACTATTTGCACTGG
CTGATGAGCCCCAACAATGGACACCTCGCACCTGA
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