Ggra911.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra911.t1
Unique Name	Ggra911.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	618

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000049_pilon	contig	tig00000049_pilon:331616..333469 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	768671.ThimaDRAFT_2833
PFAMs	Peptidase_S41
Max annot lvl	2\|Bacteria
Evalue	2.32e-41
EggNOG OGs	COG0793@1\|root,COG0793@2\|Bacteria
Description	Belongs to the peptidase S41A family
COG category	M

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra911	Ggra911	Gracilaria gracilis GNS1m male	gene	tig00000049_pilon 331616..333469 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra911.t1.start1	Ggra911.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000049_pilon 331616..331618 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra911.t1.CDS1	Ggra911.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000049_pilon 331616..333469 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra911.t1.exon1	Ggra911.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000049_pilon 331616..333469 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra911.t1.stop1	Ggra911.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000049_pilon 333467..333469 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra911.t1	Ggra911.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000049_pilon 331616..333469 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000049_pilon:331616..333469+
coding sequence from alignment at tig00000049_pilon:331616..333469+

mRNA sequence

>Ggra911.t1 ID=Ggra911.t1|Name=Ggra911.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=618bp
MILLTICFLFGFSLTGVKAVLCQTSAECVAEGPGQHFCNTEQRRCFSVTV
GTSDFQFTSLSSLVDQENASGLTALQYIKVVDRASQVLRDLNPHRFLHLN
VLNFDPVQELTVFRRELEAGQIPTKVQFDQRMKFIFQRMDDSHTRYITEN
VFRSALAFLPFSFAPYHDTRGTVLGYVVTDVATDFAIANPTFTVGAIIQS
WNNVPIGQAVEQAGIDGHGSNRVARLERALGFIRFRLLFAESIPGEDSVI
LSYLSTAGSDEQIEIPWLYIIPSSPGTDSAVMIMDSVSSVDSFENSMEEA
RKHDWSSRIYEDRKHPRLNRSRNENEATLGELSRQASSSGATVELPVSNR
LSAFLRAQLIPTTCGVVTKVTFGSFPLESDTREQVEAEIANLLESVPQDG
LVIDIRANRGGSQVLVFAILKMLTAIEFECPRFSLRATALVNSMVNSRNA
QFSDRAHRASMRTALAVGDQYTNSNEISDLNSIVSVPQVYFSKFVVIGNG
RSFSAGDVFASIVKDNDLATLILEGGNTGAGGSTVRRYSALEERNPQLFP
ALPTGVDFSLAIARFLRPASSRGAIVENFGVDADLTYFPTLDDRLNNDHD
LMETAVRTLRGAFCAQA*

spliced messenger RNA

>Ggra911.t1 ID=Ggra911.t1|Name=Ggra911.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1854bp|location=Sequence derived from alignment at tig00000049_pilon:331616..333469+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCTCCTCACCATATGCTTTCTGTTTGGATTCTCACTGACGGGTGT
CAAAGCTGTTCTATGTCAAACTAGTGCTGAGTGTGTCGCTGAAGGCCCAG
GTCAACATTTCTGCAACACGGAGCAGCGCAGGTGTTTTTCGGTTACCGTT
GGTACTTCCGATTTTCAATTTACCTCCTTGTCTTCCTTGGTCGATCAAGA
AAATGCTTCAGGTCTGACAGCTCTGCAGTATATCAAGGTGGTAGACAGAG
CTTCTCAAGTTCTACGAGATCTTAATCCTCACCGTTTCCTTCATCTAAAT
GTACTCAATTTCGATCCCGTACAGGAGCTCACTGTGTTCCGAAGGGAATT
GGAGGCCGGGCAGATACCAACCAAGGTTCAATTTGATCAGCGAATGAAGT
TCATATTCCAGAGGATGGATGACTCTCACACCCGCTACATCACAGAAAAT
GTCTTCCGTTCTGCTCTTGCGTTTCTACCGTTTTCGTTTGCCCCTTACCA
TGATACTCGAGGAACAGTGCTGGGATATGTCGTCACTGACGTTGCAACAG
ATTTTGCTATCGCAAACCCAACATTTACAGTCGGTGCTATCATTCAATCT
TGGAACAACGTGCCCATTGGGCAGGCCGTGGAACAGGCTGGGATCGATGG
TCATGGGTCCAATAGAGTGGCTCGACTAGAAAGAGCCCTCGGCTTTATCC
GATTCCGGTTACTCTTTGCGGAGTCCATTCCAGGGGAAGATTCCGTGATA
CTGTCGTATTTATCGACAGCTGGAAGCGACGAACAAATCGAAATTCCATG
GCTATACATTATCCCATCGTCACCAGGAACCGACAGTGCCGTAATGATCA
TGGACTCCGTTTCATCTGTTGATTCTTTCGAGAATTCAATGGAAGAAGCC
AGAAAGCACGATTGGTCATCTCGTATCTATGAAGATCGAAAGCATCCTCG
ATTGAACCGGAGTAGGAACGAAAATGAAGCGACTTTGGGAGAGCTGTCTC
GTCAGGCTTCTAGTTCCGGTGCAACAGTAGAGCTGCCGGTGAGCAATAGA
CTTTCGGCTTTCTTGAGGGCCCAGCTTATTCCCACAACATGTGGCGTTGT
AACGAAGGTTACCTTTGGTTCTTTTCCTTTGGAATCGGATACTCGGGAAC
AAGTAGAAGCTGAAATTGCAAACCTACTGGAGTCGGTTCCTCAGGACGGA
CTGGTGATTGATATCAGAGCAAACCGAGGTGGAAGTCAAGTACTCGTGTT
TGCCATTCTTAAGATGCTTACAGCGATCGAATTTGAATGCCCTCGCTTCA
GTCTGCGCGCCACTGCTTTAGTGAATTCAATGGTGAATTCGCGAAACGCT
CAGTTTTCAGACCGTGCCCATCGAGCGTCAATGAGAACGGCACTAGCAGT
GGGTGACCAATACACCAACTCAAACGAAATATCGGATTTGAATAGCATAG
TATCCGTACCTCAAGTGTACTTCAGCAAATTCGTGGTGATTGGGAACGGA
CGCTCATTTTCAGCTGGCGATGTATTCGCGTCTATAGTGAAGGATAATGA
TTTGGCAACCCTGATTCTGGAAGGTGGAAACACCGGAGCTGGAGGAAGCA
CTGTGAGGCGATACTCAGCTTTGGAGGAAAGAAACCCACAGTTGTTCCCG
GCACTGCCTACCGGGGTGGATTTCTCCCTGGCCATTGCGCGATTCCTCAG
ACCTGCGTCCAGCAGAGGCGCAATCGTAGAGAATTTTGGGGTGGATGCGG
ACTTGACATACTTCCCCACATTAGATGATCGACTCAACAATGACCATGAC
CTCATGGAGACCGCGGTCAGAACTTTGAGGGGAGCGTTCTGCGCGCAAGC
ATAG

protein sequence of Ggra911.t1

>Ggra911.t1 ID=Ggra911.t1|Name=Ggra911.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=618bp
MILLTICFLFGFSLTGVKAVLCQTSAECVAEGPGQHFCNTEQRRCFSVTV
GTSDFQFTSLSSLVDQENASGLTALQYIKVVDRASQVLRDLNPHRFLHLN
VLNFDPVQELTVFRRELEAGQIPTKVQFDQRMKFIFQRMDDSHTRYITEN
VFRSALAFLPFSFAPYHDTRGTVLGYVVTDVATDFAIANPTFTVGAIIQS
WNNVPIGQAVEQAGIDGHGSNRVARLERALGFIRFRLLFAESIPGEDSVI
LSYLSTAGSDEQIEIPWLYIIPSSPGTDSAVMIMDSVSSVDSFENSMEEA
RKHDWSSRIYEDRKHPRLNRSRNENEATLGELSRQASSSGATVELPVSNR
LSAFLRAQLIPTTCGVVTKVTFGSFPLESDTREQVEAEIANLLESVPQDG
LVIDIRANRGGSQVLVFAILKMLTAIEFECPRFSLRATALVNSMVNSRNA
QFSDRAHRASMRTALAVGDQYTNSNEISDLNSIVSVPQVYFSKFVVIGNG
RSFSAGDVFASIVKDNDLATLILEGGNTGAGGSTVRRYSALEERNPQLFP
ALPTGVDFSLAIARFLRPASSRGAIVENFGVDADLTYFPTLDDRLNNDHD
LMETAVRTLRGAFCAQA*

mRNA from alignment at tig00000049_pilon:331616..333469+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra911.t1 ID=Ggra911.t1|Name=Ggra911.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1854bp|location=Sequence derived from alignment at tig00000049_pilon:331616..333469+ (Gracilaria gracilis GNS1m male)
ATGATTCTCCTCACCATATGCTTTCTGTTTGGATTCTCACTGACGGGTGT
CAAAGCTGTTCTATGTCAAACTAGTGCTGAGTGTGTCGCTGAAGGCCCAG
GTCAACATTTCTGCAACACGGAGCAGCGCAGGTGTTTTTCGGTTACCGTT
GGTACTTCCGATTTTCAATTTACCTCCTTGTCTTCCTTGGTCGATCAAGA
AAATGCTTCAGGTCTGACAGCTCTGCAGTATATCAAGGTGGTAGACAGAG
CTTCTCAAGTTCTACGAGATCTTAATCCTCACCGTTTCCTTCATCTAAAT
GTACTCAATTTCGATCCCGTACAGGAGCTCACTGTGTTCCGAAGGGAATT
GGAGGCCGGGCAGATACCAACCAAGGTTCAATTTGATCAGCGAATGAAGT
TCATATTCCAGAGGATGGATGACTCTCACACCCGCTACATCACAGAAAAT
GTCTTCCGTTCTGCTCTTGCGTTTCTACCGTTTTCGTTTGCCCCTTACCA
TGATACTCGAGGAACAGTGCTGGGATATGTCGTCACTGACGTTGCAACAG
ATTTTGCTATCGCAAACCCAACATTTACAGTCGGTGCTATCATTCAATCT
TGGAACAACGTGCCCATTGGGCAGGCCGTGGAACAGGCTGGGATCGATGG
TCATGGGTCCAATAGAGTGGCTCGACTAGAAAGAGCCCTCGGCTTTATCC
GATTCCGGTTACTCTTTGCGGAGTCCATTCCAGGGGAAGATTCCGTGATA
CTGTCGTATTTATCGACAGCTGGAAGCGACGAACAAATCGAAATTCCATG
GCTATACATTATCCCATCGTCACCAGGAACCGACAGTGCCGTAATGATCA
TGGACTCCGTTTCATCTGTTGATTCTTTCGAGAATTCAATGGAAGAAGCC
AGAAAGCACGATTGGTCATCTCGTATCTATGAAGATCGAAAGCATCCTCG
ATTGAACCGGAGTAGGAACGAAAATGAAGCGACTTTGGGAGAGCTGTCTC
GTCAGGCTTCTAGTTCCGGTGCAACAGTAGAGCTGCCGGTGAGCAATAGA
CTTTCGGCTTTCTTGAGGGCCCAGCTTATTCCCACAACATGTGGCGTTGT
AACGAAGGTTACCTTTGGTTCTTTTCCTTTGGAATCGGATACTCGGGAAC
AAGTAGAAGCTGAAATTGCAAACCTACTGGAGTCGGTTCCTCAGGACGGA
CTGGTGATTGATATCAGAGCAAACCGAGGTGGAAGTCAAGTACTCGTGTT
TGCCATTCTTAAGATGCTTACAGCGATCGAATTTGAATGCCCTCGCTTCA
GTCTGCGCGCCACTGCTTTAGTGAATTCAATGGTGAATTCGCGAAACGCT
CAGTTTTCAGACCGTGCCCATCGAGCGTCAATGAGAACGGCACTAGCAGT
GGGTGACCAATACACCAACTCAAACGAAATATCGGATTTGAATAGCATAG
TATCCGTACCTCAAGTGTACTTCAGCAAATTCGTGGTGATTGGGAACGGA
CGCTCATTTTCAGCTGGCGATGTATTCGCGTCTATAGTGAAGGATAATGA
TTTGGCAACCCTGATTCTGGAAGGTGGAAACACCGGAGCTGGAGGAAGCA
CTGTGAGGCGATACTCAGCTTTGGAGGAAAGAAACCCACAGTTGTTCCCG
GCACTGCCTACCGGGGTGGATTTCTCCCTGGCCATTGCGCGATTCCTCAG
ACCTGCGTCCAGCAGAGGCGCAATCGTAGAGAATTTTGGGGTGGATGCGG
ACTTGACATACTTCCCCACATTAGATGATCGACTCAACAATGACCATGAC
CTCATGGAGACCGCGGTCAGAACTTTGAGGGGAGCGTTCTGCGCGCAAGC
ATAG

Coding sequence (CDS) from alignment at tig00000049_pilon:331616..333469+

>Ggra911.t1 ID=Ggra911.t1|Name=Ggra911.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1854bp|location=Sequence derived from alignment at tig00000049_pilon:331616..333469+ (Gracilaria gracilis GNS1m male)
ATGATTCTCCTCACCATATGCTTTCTGTTTGGATTCTCACTGACGGGTGT
CAAAGCTGTTCTATGTCAAACTAGTGCTGAGTGTGTCGCTGAAGGCCCAG
GTCAACATTTCTGCAACACGGAGCAGCGCAGGTGTTTTTCGGTTACCGTT
GGTACTTCCGATTTTCAATTTACCTCCTTGTCTTCCTTGGTCGATCAAGA
AAATGCTTCAGGTCTGACAGCTCTGCAGTATATCAAGGTGGTAGACAGAG
CTTCTCAAGTTCTACGAGATCTTAATCCTCACCGTTTCCTTCATCTAAAT
GTACTCAATTTCGATCCCGTACAGGAGCTCACTGTGTTCCGAAGGGAATT
GGAGGCCGGGCAGATACCAACCAAGGTTCAATTTGATCAGCGAATGAAGT
TCATATTCCAGAGGATGGATGACTCTCACACCCGCTACATCACAGAAAAT
GTCTTCCGTTCTGCTCTTGCGTTTCTACCGTTTTCGTTTGCCCCTTACCA
TGATACTCGAGGAACAGTGCTGGGATATGTCGTCACTGACGTTGCAACAG
ATTTTGCTATCGCAAACCCAACATTTACAGTCGGTGCTATCATTCAATCT
TGGAACAACGTGCCCATTGGGCAGGCCGTGGAACAGGCTGGGATCGATGG
TCATGGGTCCAATAGAGTGGCTCGACTAGAAAGAGCCCTCGGCTTTATCC
GATTCCGGTTACTCTTTGCGGAGTCCATTCCAGGGGAAGATTCCGTGATA
CTGTCGTATTTATCGACAGCTGGAAGCGACGAACAAATCGAAATTCCATG
GCTATACATTATCCCATCGTCACCAGGAACCGACAGTGCCGTAATGATCA
TGGACTCCGTTTCATCTGTTGATTCTTTCGAGAATTCAATGGAAGAAGCC
AGAAAGCACGATTGGTCATCTCGTATCTATGAAGATCGAAAGCATCCTCG
ATTGAACCGGAGTAGGAACGAAAATGAAGCGACTTTGGGAGAGCTGTCTC
GTCAGGCTTCTAGTTCCGGTGCAACAGTAGAGCTGCCGGTGAGCAATAGA
CTTTCGGCTTTCTTGAGGGCCCAGCTTATTCCCACAACATGTGGCGTTGT
AACGAAGGTTACCTTTGGTTCTTTTCCTTTGGAATCGGATACTCGGGAAC
AAGTAGAAGCTGAAATTGCAAACCTACTGGAGTCGGTTCCTCAGGACGGA
CTGGTGATTGATATCAGAGCAAACCGAGGTGGAAGTCAAGTACTCGTGTT
TGCCATTCTTAAGATGCTTACAGCGATCGAATTTGAATGCCCTCGCTTCA
GTCTGCGCGCCACTGCTTTAGTGAATTCAATGGTGAATTCGCGAAACGCT
CAGTTTTCAGACCGTGCCCATCGAGCGTCAATGAGAACGGCACTAGCAGT
GGGTGACCAATACACCAACTCAAACGAAATATCGGATTTGAATAGCATAG
TATCCGTACCTCAAGTGTACTTCAGCAAATTCGTGGTGATTGGGAACGGA
CGCTCATTTTCAGCTGGCGATGTATTCGCGTCTATAGTGAAGGATAATGA
TTTGGCAACCCTGATTCTGGAAGGTGGAAACACCGGAGCTGGAGGAAGCA
CTGTGAGGCGATACTCAGCTTTGGAGGAAAGAAACCCACAGTTGTTCCCG
GCACTGCCTACCGGGGTGGATTTCTCCCTGGCCATTGCGCGATTCCTCAG
ACCTGCGTCCAGCAGAGGCGCAATCGTAGAGAATTTTGGGGTGGATGCGG
ACTTGACATACTTCCCCACATTAGATGATCGACTCAACAATGACCATGAC
CTCATGGAGACCGCGGTCAGAACTTTGAGGGGAGCGTTCTGCGCGCAAGC
ATAG