Ggra9105.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9105.t1
Unique NameGgra9105.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length364
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:213172..214263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog71139.XP_010039330.1
PFAMsHAD_2,Hydrolase_6,Hydrolase_like
Max annot lvl35493|Streptophyta
Evalue2.59e-52
EggNOG OGsCOG0647@1|root,2QU6A@2759|Eukaryota,37RY9@33090|Viridiplantae,3GC0U@35493|Streptophyta
DescriptionHaloacid dehalogenase-like hydrolase
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9105Ggra9105Gracilaria gracilis GNS1m malegenetig00000176_pilon 213172..214263 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9105.t1.stop1Ggra9105.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 213172..213174 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9105.t1.CDS1Ggra9105.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 213172..214263 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9105.t1.exon1Ggra9105.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 213172..214263 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9105.t1.start1Ggra9105.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 214261..214263 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9105.t1Ggra9105.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 213172..214263 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9105.t1 ID=Ggra9105.t1|Name=Ggra9105.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=364bp
MGGKNFLNFIFQAPLGITHKALYPHSHRRFSAACKLEESVKDMRQINGVS
EISRSYDIILLDQFGVIHDGRTPYPNALNAIRRLHETGLKIAIVSNSSKQ
SSVAKQKVTKMGVDPDSIHEIVTSGQLTLEYVKNLMKSRPNAKVLHINWA
SSRGTIKLSDHGVTQVVPVSVSDSGRLLVASETIDFVLAHGTDGVTRVDG
TVQKLPLESLREMCRTIARVAPQTPFICANPDFVTVDGGTLRTMPGTLAR
DYEAEGGSVIRLGKPGNQAYEEAINACGKGRILAIGDSIAHDILGAAKRN
IDSLYIAGGIHAPLFRINPQDGFREQASPFQWDEKVIDKIIEDEAPELGT
RRPTYISDFFRWQ*
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spliced messenger RNA

>Ggra9105.t1 ID=Ggra9105.t1|Name=Ggra9105.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1092bp|location=Sequence derived from alignment at tig00000176_pilon:213172..214263- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGGGAAGAATTTTCTTAACTTCATCTTCCAAGCCCCTCTAGGCAT
AACGCACAAAGCGCTCTACCCTCATTCTCACAGGAGATTCTCTGCAGCCT
GCAAACTTGAAGAATCTGTGAAAGATATGCGGCAGATTAATGGTGTGTCC
GAGATATCAAGGAGCTACGACATAATTCTCCTTGATCAGTTTGGAGTCAT
ACACGATGGTAGAACCCCTTACCCGAATGCATTAAATGCGATAAGGAGGC
TTCATGAAACTGGACTGAAGATAGCTATTGTCTCTAATTCTTCGAAGCAA
TCAAGCGTAGCCAAACAAAAAGTGACAAAGATGGGAGTGGACCCGGACTC
TATCCACGAAATTGTTACTTCAGGGCAGTTAACTCTCGAATATGTGAAGA
ACTTGATGAAATCTCGACCAAATGCGAAGGTCTTGCACATTAATTGGGCT
TCAAGCAGGGGGACAATAAAGCTTTCTGATCATGGTGTAACGCAAGTTGT
TCCTGTTTCAGTTTCAGACAGTGGACGATTGCTCGTAGCATCAGAAACAA
TTGACTTTGTTCTCGCTCACGGAACAGATGGAGTGACTAGGGTGGACGGA
ACAGTACAAAAATTGCCACTAGAATCTCTCAGAGAAATGTGTCGCACTAT
TGCTCGTGTGGCACCTCAGACTCCGTTTATTTGTGCAAATCCAGACTTTG
TAACTGTCGATGGTGGAACTCTGAGGACAATGCCCGGTACTTTGGCTCGT
GATTATGAAGCAGAGGGCGGCTCTGTGATTAGACTCGGAAAACCTGGGAA
TCAAGCATACGAAGAGGCAATCAACGCATGCGGTAAAGGTCGTATATTGG
CCATTGGGGATTCAATTGCCCACGATATACTTGGTGCTGCGAAGAGAAAT
ATTGATTCTCTTTACATAGCTGGTGGAATACATGCGCCACTATTCCGAAT
TAACCCTCAGGATGGATTCAGGGAGCAAGCCTCTCCATTTCAATGGGATG
AGAAAGTGATCGACAAAATTATAGAGGACGAAGCTCCTGAGCTTGGTACG
AGAAGGCCAACTTACATATCTGATTTCTTCCGTTGGCAGTAA
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protein sequence of Ggra9105.t1

>Ggra9105.t1 ID=Ggra9105.t1|Name=Ggra9105.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=364bp
MGGKNFLNFIFQAPLGITHKALYPHSHRRFSAACKLEESVKDMRQINGVS
EISRSYDIILLDQFGVIHDGRTPYPNALNAIRRLHETGLKIAIVSNSSKQ
SSVAKQKVTKMGVDPDSIHEIVTSGQLTLEYVKNLMKSRPNAKVLHINWA
SSRGTIKLSDHGVTQVVPVSVSDSGRLLVASETIDFVLAHGTDGVTRVDG
TVQKLPLESLREMCRTIARVAPQTPFICANPDFVTVDGGTLRTMPGTLAR
DYEAEGGSVIRLGKPGNQAYEEAINACGKGRILAIGDSIAHDILGAAKRN
IDSLYIAGGIHAPLFRINPQDGFREQASPFQWDEKVIDKIIEDEAPELGT
RRPTYISDFFRWQ*
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mRNA from alignment at tig00000176_pilon:213172..214263-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9105.t1 ID=Ggra9105.t1|Name=Ggra9105.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1092bp|location=Sequence derived from alignment at tig00000176_pilon:213172..214263- (Gracilaria gracilis GNS1m male)
ATGGGTGGGAAGAATTTTCTTAACTTCATCTTCCAAGCCCCTCTAGGCAT
AACGCACAAAGCGCTCTACCCTCATTCTCACAGGAGATTCTCTGCAGCCT
GCAAACTTGAAGAATCTGTGAAAGATATGCGGCAGATTAATGGTGTGTCC
GAGATATCAAGGAGCTACGACATAATTCTCCTTGATCAGTTTGGAGTCAT
ACACGATGGTAGAACCCCTTACCCGAATGCATTAAATGCGATAAGGAGGC
TTCATGAAACTGGACTGAAGATAGCTATTGTCTCTAATTCTTCGAAGCAA
TCAAGCGTAGCCAAACAAAAAGTGACAAAGATGGGAGTGGACCCGGACTC
TATCCACGAAATTGTTACTTCAGGGCAGTTAACTCTCGAATATGTGAAGA
ACTTGATGAAATCTCGACCAAATGCGAAGGTCTTGCACATTAATTGGGCT
TCAAGCAGGGGGACAATAAAGCTTTCTGATCATGGTGTAACGCAAGTTGT
TCCTGTTTCAGTTTCAGACAGTGGACGATTGCTCGTAGCATCAGAAACAA
TTGACTTTGTTCTCGCTCACGGAACAGATGGAGTGACTAGGGTGGACGGA
ACAGTACAAAAATTGCCACTAGAATCTCTCAGAGAAATGTGTCGCACTAT
TGCTCGTGTGGCACCTCAGACTCCGTTTATTTGTGCAAATCCAGACTTTG
TAACTGTCGATGGTGGAACTCTGAGGACAATGCCCGGTACTTTGGCTCGT
GATTATGAAGCAGAGGGCGGCTCTGTGATTAGACTCGGAAAACCTGGGAA
TCAAGCATACGAAGAGGCAATCAACGCATGCGGTAAAGGTCGTATATTGG
CCATTGGGGATTCAATTGCCCACGATATACTTGGTGCTGCGAAGAGAAAT
ATTGATTCTCTTTACATAGCTGGTGGAATACATGCGCCACTATTCCGAAT
TAACCCTCAGGATGGATTCAGGGAGCAAGCCTCTCCATTTCAATGGGATG
AGAAAGTGATCGACAAAATTATAGAGGACGAAGCTCCTGAGCTTGGTACG
AGAAGGCCAACTTACATATCTGATTTCTTCCGTTGGCAGTAA
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Coding sequence (CDS) from alignment at tig00000176_pilon:213172..214263-

>Ggra9105.t1 ID=Ggra9105.t1|Name=Ggra9105.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1092bp|location=Sequence derived from alignment at tig00000176_pilon:213172..214263- (Gracilaria gracilis GNS1m male)
ATGGGTGGGAAGAATTTTCTTAACTTCATCTTCCAAGCCCCTCTAGGCAT
AACGCACAAAGCGCTCTACCCTCATTCTCACAGGAGATTCTCTGCAGCCT
GCAAACTTGAAGAATCTGTGAAAGATATGCGGCAGATTAATGGTGTGTCC
GAGATATCAAGGAGCTACGACATAATTCTCCTTGATCAGTTTGGAGTCAT
ACACGATGGTAGAACCCCTTACCCGAATGCATTAAATGCGATAAGGAGGC
TTCATGAAACTGGACTGAAGATAGCTATTGTCTCTAATTCTTCGAAGCAA
TCAAGCGTAGCCAAACAAAAAGTGACAAAGATGGGAGTGGACCCGGACTC
TATCCACGAAATTGTTACTTCAGGGCAGTTAACTCTCGAATATGTGAAGA
ACTTGATGAAATCTCGACCAAATGCGAAGGTCTTGCACATTAATTGGGCT
TCAAGCAGGGGGACAATAAAGCTTTCTGATCATGGTGTAACGCAAGTTGT
TCCTGTTTCAGTTTCAGACAGTGGACGATTGCTCGTAGCATCAGAAACAA
TTGACTTTGTTCTCGCTCACGGAACAGATGGAGTGACTAGGGTGGACGGA
ACAGTACAAAAATTGCCACTAGAATCTCTCAGAGAAATGTGTCGCACTAT
TGCTCGTGTGGCACCTCAGACTCCGTTTATTTGTGCAAATCCAGACTTTG
TAACTGTCGATGGTGGAACTCTGAGGACAATGCCCGGTACTTTGGCTCGT
GATTATGAAGCAGAGGGCGGCTCTGTGATTAGACTCGGAAAACCTGGGAA
TCAAGCATACGAAGAGGCAATCAACGCATGCGGTAAAGGTCGTATATTGG
CCATTGGGGATTCAATTGCCCACGATATACTTGGTGCTGCGAAGAGAAAT
ATTGATTCTCTTTACATAGCTGGTGGAATACATGCGCCACTATTCCGAAT
TAACCCTCAGGATGGATTCAGGGAGCAAGCCTCTCCATTTCAATGGGATG
AGAAAGTGATCGACAAAATTATAGAGGACGAAGCTCCTGAGCTTGGTACG
AGAAGGCCAACTTACATATCTGATTTCTTCCGTTGGCAGTAA
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