Ggra9104.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9104.t1
Unique NameGgra9104.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length492
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:209768..212099 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9104Ggra9104Gracilaria gracilis GNS1m malegenetig00000176_pilon 209768..212099 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9104.t1Ggra9104.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 209768..212099 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9104.t1.stop1Ggra9104.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 209768..209770 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9104.t1.CDS1Ggra9104.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 209768..210164 -
Ggra9104.t1.CDS2Ggra9104.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000176_pilon 210268..210830 -
Ggra9104.t1.CDS3Ggra9104.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000176_pilon 211288..211429 -
Ggra9104.t1.CDS4Ggra9104.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000176_pilon 211726..212099 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9104.t1.exon1Ggra9104.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 209768..210164 -
Ggra9104.t1.exon2Ggra9104.t1.exon2Gracilaria gracilis GNS1m maleexontig00000176_pilon 210268..210830 -
Ggra9104.t1.exon3Ggra9104.t1.exon3Gracilaria gracilis GNS1m maleexontig00000176_pilon 211288..211429 -
Ggra9104.t1.exon4Ggra9104.t1.exon4Gracilaria gracilis GNS1m maleexontig00000176_pilon 211726..212099 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9104.t1.intron1Ggra9104.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000176_pilon 210165..210267 -
Ggra9104.t1.intron2Ggra9104.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000176_pilon 210831..211287 -
Ggra9104.t1.intron3Ggra9104.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000176_pilon 211430..211725 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9104.t1.start1Ggra9104.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 212097..212099 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9104.t1 ID=Ggra9104.t1|Name=Ggra9104.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=492bp
MAEDPNVFRLLIPSADGCRILVTSLGERYNLPEVCPPKTGEVPWVDSWNR
HTDDLCEAVTRSLSLSGYARNLVWFNPDTPPYYNDVVIVFDLLEDLSSIP
SGYRWVASGDLSDVDWGLGTPHLIYITHFDDDQNLLIYRGSLSLYKGSEL
LVLSTLAEFQVASIDIVDDLRQLDKRNVAEQEKAIWACEAVLPDILGSIK
KCYVTASEPETTCAEQAAHLIIPSRNESQVLLQTEGQKYMLLHVNISVEG
RRWSFGEALWERDPESIRNSALEATGLGLNLLRSAFVRLHDETDDELLVL
VIDPKKGERITEGMYVWVSRKDLSFEQKGLTCDILTSSLLNDVLGCDSSQ
REALSMGHCSIIQYHVSEGVHLRSSKTPEIVSPEVVYAKAVESDSVGVHL
TKFIESISVYVPTVLEVSVQLNTFLQKDGGSYDTENLDPEALMTGLADIQ
QVSVDYFHRLRMLGAEQIDMTWVSRAVKTVKTECTRSKLGT*
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spliced messenger RNA

>Ggra9104.t1 ID=Ggra9104.t1|Name=Ggra9104.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1476bp|location=Sequence derived from alignment at tig00000176_pilon:209768..212099- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGAAGATCCAAATGTGTTTCGTTTGCTCATTCCAAGTGCCGATGG
ATGCCGTATTCTCGTCACATCACTTGGTGAAAGATACAATCTACCAGAAG
TCTGTCCACCCAAAACTGGTGAAGTTCCGTGGGTTGATTCGTGGAACAGA
CACACTGACGACCTCTGTGAAGCAGTTACGCGCTCTCTCTCTCTTTCTGG
TTATGCTCGAAATCTTGTTTGGTTCAATCCGGATACTCCACCTTACTACA
ACGATGTGGTTATTGTATTCGATCTACTCGAGGACTTGTCGAGTATCCCA
AGCGGATATCGCTGGGTAGCGAGCGGCGACCTTAGTGACGTAGATTGGGG
TTTGGGCACTCCACATTTGATATACATCACTCACTTTGACGATGACCAGA
ACCTGCTGATATACCGTGGATCCCTTTCTTTGTACAAAGGAAGTGAGTTG
CTCGTACTGAGCACTCTCGCGGAGTTCCAGGTCGCGTCCATTGATATTGT
TGATGACCTCCGTCAGTTGGATAAACGTAATGTTGCGGAGCAGGAAAAAG
CCATTTGGGCGTGCGAAGCTGTTCTACCGGACATTTTGGGCTCGATAAAG
AAGTGTTACGTCACCGCATCTGAACCAGAAACAACGTGTGCAGAACAGGC
TGCGCACTTGATCATTCCTAGTCGGAATGAAAGCCAGGTTCTTTTGCAAA
CCGAAGGGCAGAAGTACATGTTGCTTCATGTCAACATTTCGGTTGAAGGA
CGTCGTTGGAGCTTCGGAGAAGCATTATGGGAGAGAGATCCAGAATCCAT
CAGGAACAGCGCGCTGGAGGCAACTGGATTGGGCTTGAACTTATTAAGAT
CAGCGTTTGTACGACTACATGACGAAACTGATGATGAACTCCTAGTTCTT
GTTATAGACCCAAAAAAGGGAGAAAGAATTACTGAGGGCATGTACGTTTG
GGTTTCTCGGAAGGATTTGAGCTTTGAACAGAAAGGCCTTACATGTGACA
TCCTTACTTCATCCCTTCTAAATGACGTACTTGGTTGCGACTCATCTCAA
CGAGAAGCTTTGTCCATGGGGCACTGTAGCATCATACAATACCATGTATC
AGAAGGGGTTCATCTGAGGAGCAGCAAGACACCCGAAATCGTCTCACCCG
AAGTCGTATACGCCAAGGCCGTCGAAAGCGATTCTGTGGGGGTGCATCTG
ACGAAGTTCATCGAGTCGATTTCTGTCTATGTACCTACTGTTCTAGAAGT
CAGTGTGCAGCTAAACACTTTCTTGCAGAAGGATGGGGGAAGCTATGACA
CTGAGAACCTGGATCCGGAAGCGTTAATGACAGGTCTGGCTGATATACAA
CAGGTATCTGTAGACTATTTCCACCGCTTGCGAATGTTAGGTGCGGAGCA
GATCGACATGACTTGGGTTTCTAGAGCAGTGAAAACGGTCAAAACGGAAT
GCACACGCAGCAAGTTAGGTACTTGA
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protein sequence of Ggra9104.t1

>Ggra9104.t1 ID=Ggra9104.t1|Name=Ggra9104.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=492bp
MAEDPNVFRLLIPSADGCRILVTSLGERYNLPEVCPPKTGEVPWVDSWNR
HTDDLCEAVTRSLSLSGYARNLVWFNPDTPPYYNDVVIVFDLLEDLSSIP
SGYRWVASGDLSDVDWGLGTPHLIYITHFDDDQNLLIYRGSLSLYKGSEL
LVLSTLAEFQVASIDIVDDLRQLDKRNVAEQEKAIWACEAVLPDILGSIK
KCYVTASEPETTCAEQAAHLIIPSRNESQVLLQTEGQKYMLLHVNISVEG
RRWSFGEALWERDPESIRNSALEATGLGLNLLRSAFVRLHDETDDELLVL
VIDPKKGERITEGMYVWVSRKDLSFEQKGLTCDILTSSLLNDVLGCDSSQ
REALSMGHCSIIQYHVSEGVHLRSSKTPEIVSPEVVYAKAVESDSVGVHL
TKFIESISVYVPTVLEVSVQLNTFLQKDGGSYDTENLDPEALMTGLADIQ
QVSVDYFHRLRMLGAEQIDMTWVSRAVKTVKTECTRSKLGT*
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mRNA from alignment at tig00000176_pilon:209768..212099-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9104.t1 ID=Ggra9104.t1|Name=Ggra9104.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2332bp|location=Sequence derived from alignment at tig00000176_pilon:209768..212099- (Gracilaria gracilis GNS1m male)
ATGGCGGAAGATCCAAATGTGTTTCGTTTGCTCATTCCAAGTGCCGATGG
ATGCCGTATTCTCGTCACATCACTTGGTGAAAGATACAATCTACCAGAAG
TCTGTCCACCCAAAACTGGTGAAGTTCCGTGGGTTGATTCGTGGAACAGA
CACACTGACGACCTCTGTGAAGCAGTTACGCGCTCTCTCTCTCTTTCTGG
TTATGCTCGAAATCTTGTTTGGTTCAATCCGGATACTCCACCTTACTACA
ACGATGTGGTTATTGTATTCGATCTACTCGAGGACTTGTCGAGTATCCCA
AGCGGATATCGCTGGGTAGCGAGCGGCGACCTTAGTGACGTAGATTGGGG
TTTGGGCACTCCACATTTGATATAGTAAGTTTGTTATCCAGCCTTCATTA
GACCTGGCTGGTTTCGAAATGTGTCAAGGTCAGTTCATGAGATACTTAGA
TCCGCTGGGTTCAACGTCGCTCACGGAGGCTTGAAACCGGTGTCAAATAT
GTGGGACTATACTTTGAGGAGCGTTCTCCTTCATCCACCACAGCGGCAAT
TGATGTTTTCCAATAGTTTCAGGATGTATGCTTTATCGTGGAGGCATGTC
TGCCGAATTCTTGTGAGCCCAAGCTAGTGGCCAAACTATCCGAAGAGTTT
GGTTCCGGATTTTTGCCAAGCATCACTCACTTTGACGATGACCAGAACCT
GCTGATATACCGTGGATCCCTTTCTTTGTACAAAGGAAGTGAGTTGCTCG
TACTGAGCACTCTCGCGGAGTTCCAGGTCGCGTCCATTGATATTGTTGAT
GACCTCCGTCAGGTAGGGCTCCCCGTTCTCTCAACTTCCTGGTTGGCATC
AGCAGCTTCTATCGTTTTACAACACCCTCTACTGCGTCCTGCTTCTATTT
GTCTATTACAGTTACAGCGCTTTTTGAATGAGTTTGTCACAGTTGTATCA
CTTTTGCTTCATTTGGCATTCCCAGTACCCTGGTAAACGGATATCTCAAC
ATGGATAGTACAAAGTATTTATAGAAGTTTGGGACAACATGGGGGCCCTT
GTATTTTGGCTTGGTCCCGAGCGTTTGTGGGCAATCCATTGTTCGATTAT
ATTACAATTACTGAGCATGGCTTTGATGCAATTACTGACGAAGCAGCAAA
GGATGTCTACTTCGGAAAGTGGTCGAAGTACATATGTACCAAGGGAAAAG
TTAGAACAAGCCTGCTCAGTAGCCCGCCCGCTAGTGGAATTCATCACGTT
GTACCTTGAATTGAAACAGTTGGATAAACGTAATGTTGCGGAGCAGGAAA
AAGCCATTTGGGCGTGCGAAGCTGTTCTACCGGACATTTTGGGCTCGATA
AAGAAGTGTTACGTCACCGCATCTGAACCAGAAACAACGTGTGCAGAACA
GGCTGCGCACTTGATCATTCCTAGTCGGAATGAAAGCCAGGTTCTTTTGC
AAACCGAAGGGCAGAAGTACATGTTGCTTCATGTCAACATTTCGGTTGAA
GGACGTCGTTGGAGCTTCGGAGAAGCATTATGGGAGAGAGATCCAGAATC
CATCAGGAACAGCGCGCTGGAGGCAACTGGATTGGGCTTGAACTTATTAA
GATCAGCGTTTGTACGACTACATGACGAAACTGATGATGAACTCCTAGTT
CTTGTTATAGACCCAAAAAAGGGAGAAAGAATTACTGAGGGCATGTACGT
TTGGGTTTCTCGGAAGGATTTGAGCTTTGAACAGAAAGGCCTTACATGTG
ACATCCTTACTTCATCCCTTCTAAATGACGTACTTGGTTGCGACTCATCT
CAACGAGAAGCTTTGTCCATGGGGCACTGTAGGTTGGTTTTCGAAGGTTT
CACCTTGGGTTAATCCCGTGTTGAAGCGAAACGGTATGCAACTGAGTGGA
CCCATACTCCAAGTTCGCTCTAGCTCACGTTCTAGCATCATACAATACCA
TGTATCAGAAGGGGTTCATCTGAGGAGCAGCAAGACACCCGAAATCGTCT
CACCCGAAGTCGTATACGCCAAGGCCGTCGAAAGCGATTCTGTGGGGGTG
CATCTGACGAAGTTCATCGAGTCGATTTCTGTCTATGTACCTACTGTTCT
AGAAGTCAGTGTGCAGCTAAACACTTTCTTGCAGAAGGATGGGGGAAGCT
ATGACACTGAGAACCTGGATCCGGAAGCGTTAATGACAGGTCTGGCTGAT
ATACAACAGGTATCTGTAGACTATTTCCACCGCTTGCGAATGTTAGGTGC
GGAGCAGATCGACATGACTTGGGTTTCTAGAGCAGTGAAAACGGTCAAAA
CGGAATGCACACGCAGCAAGTTAGGTACTTGA
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Coding sequence (CDS) from alignment at tig00000176_pilon:209768..212099-

>Ggra9104.t1 ID=Ggra9104.t1|Name=Ggra9104.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1476bp|location=Sequence derived from alignment at tig00000176_pilon:209768..212099- (Gracilaria gracilis GNS1m male)
ATGGCGGAAGATCCAAATGTGTTTCGTTTGCTCATTCCAAGTGCCGATGG
ATGCCGTATTCTCGTCACATCACTTGGTGAAAGATACAATCTACCAGAAG
TCTGTCCACCCAAAACTGGTGAAGTTCCGTGGGTTGATTCGTGGAACAGA
CACACTGACGACCTCTGTGAAGCAGTTACGCGCTCTCTCTCTCTTTCTGG
TTATGCTCGAAATCTTGTTTGGTTCAATCCGGATACTCCACCTTACTACA
ACGATGTGGTTATTGTATTCGATCTACTCGAGGACTTGTCGAGTATCCCA
AGCGGATATCGCTGGGTAGCGAGCGGCGACCTTAGTGACGTAGATTGGGG
TTTGGGCACTCCACATTTGATATACATCACTCACTTTGACGATGACCAGA
ACCTGCTGATATACCGTGGATCCCTTTCTTTGTACAAAGGAAGTGAGTTG
CTCGTACTGAGCACTCTCGCGGAGTTCCAGGTCGCGTCCATTGATATTGT
TGATGACCTCCGTCAGTTGGATAAACGTAATGTTGCGGAGCAGGAAAAAG
CCATTTGGGCGTGCGAAGCTGTTCTACCGGACATTTTGGGCTCGATAAAG
AAGTGTTACGTCACCGCATCTGAACCAGAAACAACGTGTGCAGAACAGGC
TGCGCACTTGATCATTCCTAGTCGGAATGAAAGCCAGGTTCTTTTGCAAA
CCGAAGGGCAGAAGTACATGTTGCTTCATGTCAACATTTCGGTTGAAGGA
CGTCGTTGGAGCTTCGGAGAAGCATTATGGGAGAGAGATCCAGAATCCAT
CAGGAACAGCGCGCTGGAGGCAACTGGATTGGGCTTGAACTTATTAAGAT
CAGCGTTTGTACGACTACATGACGAAACTGATGATGAACTCCTAGTTCTT
GTTATAGACCCAAAAAAGGGAGAAAGAATTACTGAGGGCATGTACGTTTG
GGTTTCTCGGAAGGATTTGAGCTTTGAACAGAAAGGCCTTACATGTGACA
TCCTTACTTCATCCCTTCTAAATGACGTACTTGGTTGCGACTCATCTCAA
CGAGAAGCTTTGTCCATGGGGCACTGTAGCATCATACAATACCATGTATC
AGAAGGGGTTCATCTGAGGAGCAGCAAGACACCCGAAATCGTCTCACCCG
AAGTCGTATACGCCAAGGCCGTCGAAAGCGATTCTGTGGGGGTGCATCTG
ACGAAGTTCATCGAGTCGATTTCTGTCTATGTACCTACTGTTCTAGAAGT
CAGTGTGCAGCTAAACACTTTCTTGCAGAAGGATGGGGGAAGCTATGACA
CTGAGAACCTGGATCCGGAAGCGTTAATGACAGGTCTGGCTGATATACAA
CAGGTATCTGTAGACTATTTCCACCGCTTGCGAATGTTAGGTGCGGAGCA
GATCGACATGACTTGGGTTTCTAGAGCAGTGAAAACGGTCAAAACGGAAT
GCACACGCAGCAAGTTAGGTACTTGA
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