Ggra9096.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9096.t1
Unique NameGgra9096.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length784
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:178399..180750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705938.1
PFAMstRNA-synt_1c,tRNA-synt_1c_C,tRNA_synt_1c_R1
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01886
KEGG ReactionR03652
KEGG Pathwayko00970,ko01100,map00970,map01100
KEGG ModuleM00359,M00360
GOsGO:0003674,GO:0003824,GO:0004812,GO:0004819,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006425,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
Evalue4.25e-244
EggNOG OGsCOG0008@1|root,KOG1148@2759|Eukaryota
EC6.1.1.18
Descriptionglutaminyl-tRNA aminoacylation
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9096Ggra9096Gracilaria gracilis GNS1m malegenetig00000176_pilon 178399..180750 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9096.t1.stop1Ggra9096.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 178399..178401 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9096.t1.CDS1Ggra9096.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 178399..180750 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9096.t1.exon1Ggra9096.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 178399..180750 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9096.t1.start1Ggra9096.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 180748..180750 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9096.t1Ggra9096.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 178399..180750 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9096.t1 ID=Ggra9096.t1|Name=Ggra9096.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=784bp
MPSNSVKELTPDAQERVSTLEEYGLESRLAHTVGKSEKTTNTLLDAFTCA
SLSPKPQHGALKAALLYTATTKLNSLVGKNGRTLLYSAVGDGKLDDSPHV
EAAAAWLNSVYKKAGGSVPDTKVKLDDITIDEKEFEHAAGVGVVVSEADI
EAAVSEAIELNKPELLEKRYRFNSGLMQRKVMEKLRFADGKVINSLIRSR
IQNLLGPKTEADLAKPPKVKKQKTKKAPAAKKVEEGTEEVADPFEGVPNR
FEARGLSSAENTPELLEKHRKATGGKVVTRFPPEPNGYLHVGHAKAMFID
FGYAKKMAGECVLRFDDTNPTVEKTEYIDAIIEMVKWMGHEPVRITYSSD
YFGELYDLAVELIKRGKAYVCHQTGDEISKGRKDGADSPWRDRTVEENIR
LFDDMRKGKYGEGEATLRMKIDMKHPNLVMRDPVAYRVIHAPHPHVGDKW
CVYPSYDYTHCIVDSLEWITHSLCTLEFEIRRDSYYWLLEALDLYRPFVW
ESSRLNLEYTVMSKRKLKQLVEQGYVRGWDDPRMPTLVGMSRRGYSPNSL
NRFCNAIGVSRANNVIGMHVLEHWVRTEHDSNSKRVLAVLRPLKITISNF
KENEVLSVSNHPKKEGMGKREVLLTKTVYIERTDFRMVDEKGYYGLAPGK
SAMLRYAYPIKVMDVIKEGEEVVELVAEMDYSKSTKPKGVLHWVGENAIS
FEARLYSTLFKSPDPSVLKDDWLNDLNEEGEVVLKNCLIEESVKDSKAGE
TFQFERKGYFTVDSDSSTDKMVFNMTVSLRDSR*
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spliced messenger RNA

>Ggra9096.t1 ID=Ggra9096.t1|Name=Ggra9096.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2352bp|location=Sequence derived from alignment at tig00000176_pilon:178399..180750- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTCAAACTCTGTGAAAGAACTCACGCCGGATGCCCAGGAGCGAGT
TTCAACTCTGGAAGAGTACGGCTTGGAATCACGCCTGGCTCACACCGTTG
GAAAAAGTGAGAAAACTACAAACACGCTCCTTGATGCGTTTACTTGCGCC
TCACTGAGTCCAAAACCACAACATGGAGCGCTCAAAGCGGCCTTGTTATA
CACCGCAACAACAAAGCTGAACTCCCTCGTTGGCAAGAACGGACGCACTC
TTCTTTATAGCGCAGTTGGAGATGGGAAGCTAGATGATTCGCCTCATGTG
GAAGCCGCCGCTGCGTGGTTGAACAGCGTATACAAGAAAGCCGGTGGCTC
TGTTCCGGATACGAAAGTGAAACTAGACGATATCACAATTGACGAAAAGG
AATTTGAGCATGCTGCCGGCGTTGGGGTAGTAGTTTCTGAAGCCGACATT
GAGGCTGCTGTTAGCGAAGCAATCGAATTGAACAAGCCCGAGCTTTTGGA
AAAGCGATATCGCTTCAACTCAGGTTTGATGCAGAGAAAAGTGATGGAAA
AGCTTCGGTTTGCGGACGGAAAGGTTATCAATAGCCTCATTCGTTCCCGC
ATACAAAATTTACTTGGTCCTAAAACTGAAGCAGATCTTGCCAAACCGCC
AAAGGTCAAGAAACAGAAAACAAAGAAGGCACCTGCTGCAAAGAAAGTAG
AGGAGGGAACAGAAGAGGTTGCAGATCCATTTGAGGGTGTACCAAATAGA
TTTGAGGCACGAGGGCTTTCAAGCGCTGAGAACACACCTGAGCTCCTCGA
GAAGCATCGCAAGGCGACTGGGGGCAAGGTGGTGACAAGGTTCCCCCCAG
AGCCAAACGGATACTTGCATGTTGGTCATGCAAAAGCAATGTTCATCGAT
TTTGGGTACGCGAAGAAAATGGCAGGAGAATGTGTGCTGCGCTTTGATGA
CACCAATCCAACGGTGGAGAAGACCGAGTACATTGATGCAATCATAGAAA
TGGTGAAGTGGATGGGACACGAGCCAGTCCGCATCACATACAGCTCAGAC
TATTTTGGAGAATTGTATGATCTTGCTGTCGAGCTTATCAAGAGAGGCAA
AGCTTATGTGTGCCATCAGACAGGTGACGAAATCTCAAAGGGGCGAAAAG
ATGGTGCAGACTCGCCCTGGCGAGACAGGACTGTGGAGGAAAACATTCGT
CTTTTCGACGATATGCGGAAAGGAAAGTACGGTGAAGGCGAAGCAACTCT
TCGTATGAAGATTGACATGAAGCATCCGAACTTGGTCATGCGTGATCCCG
TTGCGTACCGCGTTATTCACGCGCCACACCCCCATGTGGGAGACAAATGG
TGCGTGTATCCATCCTATGATTACACGCATTGCATCGTTGACTCTCTGGA
ATGGATTACACATTCTCTATGCACTTTGGAGTTTGAGATTAGACGTGATT
CTTATTACTGGCTGTTAGAAGCGCTTGACCTTTACCGGCCATTTGTCTGG
GAGTCTTCTAGACTTAACCTGGAATACACGGTGATGTCAAAGAGAAAGCT
GAAGCAGCTGGTAGAACAGGGATACGTCCGCGGATGGGATGATCCTCGAA
TGCCAACCTTAGTTGGAATGAGTCGTCGCGGTTATTCTCCGAACTCGCTC
AACCGCTTCTGCAACGCCATCGGCGTTTCTCGGGCGAATAATGTGATCGG
CATGCACGTTTTAGAACATTGGGTACGAACTGAACATGATTCCAATTCCA
AGAGAGTGTTGGCCGTGTTAAGGCCGTTGAAGATAACTATCAGCAACTTT
AAGGAAAACGAAGTACTTAGCGTCTCTAATCACCCGAAGAAAGAGGGAAT
GGGCAAGCGCGAAGTTTTGCTGACTAAGACTGTTTACATTGAGCGGACTG
ATTTCAGAATGGTTGATGAGAAAGGGTATTATGGCCTTGCACCTGGAAAG
AGTGCAATGTTGCGCTACGCGTATCCAATCAAGGTCATGGATGTGATTAA
AGAAGGCGAAGAGGTTGTGGAACTGGTGGCCGAAATGGACTACAGTAAGT
CTACGAAGCCAAAGGGCGTTCTTCATTGGGTCGGGGAGAATGCAATCTCC
TTCGAGGCTCGTCTGTATAGTACCCTTTTCAAGAGTCCAGACCCTTCAGT
TCTAAAGGACGATTGGCTAAACGATTTGAACGAGGAAGGTGAAGTTGTTT
TGAAGAACTGTTTGATAGAAGAAAGCGTTAAGGATTCAAAGGCGGGGGAA
ACATTCCAGTTTGAACGAAAAGGATACTTCACAGTTGATTCAGATAGCTC
TACTGATAAGATGGTATTCAATATGACAGTTTCACTACGGGACTCGCGTT
AA
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protein sequence of Ggra9096.t1

>Ggra9096.t1 ID=Ggra9096.t1|Name=Ggra9096.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=784bp
MPSNSVKELTPDAQERVSTLEEYGLESRLAHTVGKSEKTTNTLLDAFTCA
SLSPKPQHGALKAALLYTATTKLNSLVGKNGRTLLYSAVGDGKLDDSPHV
EAAAAWLNSVYKKAGGSVPDTKVKLDDITIDEKEFEHAAGVGVVVSEADI
EAAVSEAIELNKPELLEKRYRFNSGLMQRKVMEKLRFADGKVINSLIRSR
IQNLLGPKTEADLAKPPKVKKQKTKKAPAAKKVEEGTEEVADPFEGVPNR
FEARGLSSAENTPELLEKHRKATGGKVVTRFPPEPNGYLHVGHAKAMFID
FGYAKKMAGECVLRFDDTNPTVEKTEYIDAIIEMVKWMGHEPVRITYSSD
YFGELYDLAVELIKRGKAYVCHQTGDEISKGRKDGADSPWRDRTVEENIR
LFDDMRKGKYGEGEATLRMKIDMKHPNLVMRDPVAYRVIHAPHPHVGDKW
CVYPSYDYTHCIVDSLEWITHSLCTLEFEIRRDSYYWLLEALDLYRPFVW
ESSRLNLEYTVMSKRKLKQLVEQGYVRGWDDPRMPTLVGMSRRGYSPNSL
NRFCNAIGVSRANNVIGMHVLEHWVRTEHDSNSKRVLAVLRPLKITISNF
KENEVLSVSNHPKKEGMGKREVLLTKTVYIERTDFRMVDEKGYYGLAPGK
SAMLRYAYPIKVMDVIKEGEEVVELVAEMDYSKSTKPKGVLHWVGENAIS
FEARLYSTLFKSPDPSVLKDDWLNDLNEEGEVVLKNCLIEESVKDSKAGE
TFQFERKGYFTVDSDSSTDKMVFNMTVSLRDSR*
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mRNA from alignment at tig00000176_pilon:178399..180750-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9096.t1 ID=Ggra9096.t1|Name=Ggra9096.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2352bp|location=Sequence derived from alignment at tig00000176_pilon:178399..180750- (Gracilaria gracilis GNS1m male)
ATGCCTTCAAACTCTGTGAAAGAACTCACGCCGGATGCCCAGGAGCGAGT TTCAACTCTGGAAGAGTACGGCTTGGAATCACGCCTGGCTCACACCGTTG GAAAAAGTGAGAAAACTACAAACACGCTCCTTGATGCGTTTACTTGCGCC TCACTGAGTCCAAAACCACAACATGGAGCGCTCAAAGCGGCCTTGTTATA CACCGCAACAACAAAGCTGAACTCCCTCGTTGGCAAGAACGGACGCACTC TTCTTTATAGCGCAGTTGGAGATGGGAAGCTAGATGATTCGCCTCATGTG GAAGCCGCCGCTGCGTGGTTGAACAGCGTATACAAGAAAGCCGGTGGCTC TGTTCCGGATACGAAAGTGAAACTAGACGATATCACAATTGACGAAAAGG AATTTGAGCATGCTGCCGGCGTTGGGGTAGTAGTTTCTGAAGCCGACATT GAGGCTGCTGTTAGCGAAGCAATCGAATTGAACAAGCCCGAGCTTTTGGA AAAGCGATATCGCTTCAACTCAGGTTTGATGCAGAGAAAAGTGATGGAAA AGCTTCGGTTTGCGGACGGAAAGGTTATCAATAGCCTCATTCGTTCCCGC ATACAAAATTTACTTGGTCCTAAAACTGAAGCAGATCTTGCCAAACCGCC AAAGGTCAAGAAACAGAAAACAAAGAAGGCACCTGCTGCAAAGAAAGTAG AGGAGGGAACAGAAGAGGTTGCAGATCCATTTGAGGGTGTACCAAATAGA TTTGAGGCACGAGGGCTTTCAAGCGCTGAGAACACACCTGAGCTCCTCGA GAAGCATCGCAAGGCGACTGGGGGCAAGGTGGTGACAAGGTTCCCCCCAG AGCCAAACGGATACTTGCATGTTGGTCATGCAAAAGCAATGTTCATCGAT TTTGGGTACGCGAAGAAAATGGCAGGAGAATGTGTGCTGCGCTTTGATGA CACCAATCCAACGGTGGAGAAGACCGAGTACATTGATGCAATCATAGAAA TGGTGAAGTGGATGGGACACGAGCCAGTCCGCATCACATACAGCTCAGAC TATTTTGGAGAATTGTATGATCTTGCTGTCGAGCTTATCAAGAGAGGCAA AGCTTATGTGTGCCATCAGACAGGTGACGAAATCTCAAAGGGGCGAAAAG ATGGTGCAGACTCGCCCTGGCGAGACAGGACTGTGGAGGAAAACATTCGT CTTTTCGACGATATGCGGAAAGGAAAGTACGGTGAAGGCGAAGCAACTCT TCGTATGAAGATTGACATGAAGCATCCGAACTTGGTCATGCGTGATCCCG TTGCGTACCGCGTTATTCACGCGCCACACCCCCATGTGGGAGACAAATGG TGCGTGTATCCATCCTATGATTACACGCATTGCATCGTTGACTCTCTGGA ATGGATTACACATTCTCTATGCACTTTGGAGTTTGAGATTAGACGTGATT CTTATTACTGGCTGTTAGAAGCGCTTGACCTTTACCGGCCATTTGTCTGG GAGTCTTCTAGACTTAACCTGGAATACACGGTGATGTCAAAGAGAAAGCT GAAGCAGCTGGTAGAACAGGGATACGTCCGCGGATGGGATGATCCTCGAA TGCCAACCTTAGTTGGAATGAGTCGTCGCGGTTATTCTCCGAACTCGCTC AACCGCTTCTGCAACGCCATCGGCGTTTCTCGGGCGAATAATGTGATCGG CATGCACGTTTTAGAACATTGGGTACGAACTGAACATGATTCCAATTCCA AGAGAGTGTTGGCCGTGTTAAGGCCGTTGAAGATAACTATCAGCAACTTT AAGGAAAACGAAGTACTTAGCGTCTCTAATCACCCGAAGAAAGAGGGAAT GGGCAAGCGCGAAGTTTTGCTGACTAAGACTGTTTACATTGAGCGGACTG ATTTCAGAATGGTTGATGAGAAAGGGTATTATGGCCTTGCACCTGGAAAG AGTGCAATGTTGCGCTACGCGTATCCAATCAAGGTCATGGATGTGATTAA AGAAGGCGAAGAGGTTGTGGAACTGGTGGCCGAAATGGACTACAGTAAGT CTACGAAGCCAAAGGGCGTTCTTCATTGGGTCGGGGAGAATGCAATCTCC TTCGAGGCTCGTCTGTATAGTACCCTTTTCAAGAGTCCAGACCCTTCAGT TCTAAAGGACGATTGGCTAAACGATTTGAACGAGGAAGGTGAAGTTGTTT TGAAGAACTGTTTGATAGAAGAAAGCGTTAAGGATTCAAAGGCGGGGGAA ACATTCCAGTTTGAACGAAAAGGATACTTCACAGTTGATTCAGATAGCTC TACTGATAAGATGGTATTCAATATGACAGTTTCACTACGGGACTCGCGTT AA
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Coding sequence (CDS) from alignment at tig00000176_pilon:178399..180750-

>Ggra9096.t1 ID=Ggra9096.t1|Name=Ggra9096.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2352bp|location=Sequence derived from alignment at tig00000176_pilon:178399..180750- (Gracilaria gracilis GNS1m male)
ATGCCTTCAAACTCTGTGAAAGAACTCACGCCGGATGCCCAGGAGCGAGT
TTCAACTCTGGAAGAGTACGGCTTGGAATCACGCCTGGCTCACACCGTTG
GAAAAAGTGAGAAAACTACAAACACGCTCCTTGATGCGTTTACTTGCGCC
TCACTGAGTCCAAAACCACAACATGGAGCGCTCAAAGCGGCCTTGTTATA
CACCGCAACAACAAAGCTGAACTCCCTCGTTGGCAAGAACGGACGCACTC
TTCTTTATAGCGCAGTTGGAGATGGGAAGCTAGATGATTCGCCTCATGTG
GAAGCCGCCGCTGCGTGGTTGAACAGCGTATACAAGAAAGCCGGTGGCTC
TGTTCCGGATACGAAAGTGAAACTAGACGATATCACAATTGACGAAAAGG
AATTTGAGCATGCTGCCGGCGTTGGGGTAGTAGTTTCTGAAGCCGACATT
GAGGCTGCTGTTAGCGAAGCAATCGAATTGAACAAGCCCGAGCTTTTGGA
AAAGCGATATCGCTTCAACTCAGGTTTGATGCAGAGAAAAGTGATGGAAA
AGCTTCGGTTTGCGGACGGAAAGGTTATCAATAGCCTCATTCGTTCCCGC
ATACAAAATTTACTTGGTCCTAAAACTGAAGCAGATCTTGCCAAACCGCC
AAAGGTCAAGAAACAGAAAACAAAGAAGGCACCTGCTGCAAAGAAAGTAG
AGGAGGGAACAGAAGAGGTTGCAGATCCATTTGAGGGTGTACCAAATAGA
TTTGAGGCACGAGGGCTTTCAAGCGCTGAGAACACACCTGAGCTCCTCGA
GAAGCATCGCAAGGCGACTGGGGGCAAGGTGGTGACAAGGTTCCCCCCAG
AGCCAAACGGATACTTGCATGTTGGTCATGCAAAAGCAATGTTCATCGAT
TTTGGGTACGCGAAGAAAATGGCAGGAGAATGTGTGCTGCGCTTTGATGA
CACCAATCCAACGGTGGAGAAGACCGAGTACATTGATGCAATCATAGAAA
TGGTGAAGTGGATGGGACACGAGCCAGTCCGCATCACATACAGCTCAGAC
TATTTTGGAGAATTGTATGATCTTGCTGTCGAGCTTATCAAGAGAGGCAA
AGCTTATGTGTGCCATCAGACAGGTGACGAAATCTCAAAGGGGCGAAAAG
ATGGTGCAGACTCGCCCTGGCGAGACAGGACTGTGGAGGAAAACATTCGT
CTTTTCGACGATATGCGGAAAGGAAAGTACGGTGAAGGCGAAGCAACTCT
TCGTATGAAGATTGACATGAAGCATCCGAACTTGGTCATGCGTGATCCCG
TTGCGTACCGCGTTATTCACGCGCCACACCCCCATGTGGGAGACAAATGG
TGCGTGTATCCATCCTATGATTACACGCATTGCATCGTTGACTCTCTGGA
ATGGATTACACATTCTCTATGCACTTTGGAGTTTGAGATTAGACGTGATT
CTTATTACTGGCTGTTAGAAGCGCTTGACCTTTACCGGCCATTTGTCTGG
GAGTCTTCTAGACTTAACCTGGAATACACGGTGATGTCAAAGAGAAAGCT
GAAGCAGCTGGTAGAACAGGGATACGTCCGCGGATGGGATGATCCTCGAA
TGCCAACCTTAGTTGGAATGAGTCGTCGCGGTTATTCTCCGAACTCGCTC
AACCGCTTCTGCAACGCCATCGGCGTTTCTCGGGCGAATAATGTGATCGG
CATGCACGTTTTAGAACATTGGGTACGAACTGAACATGATTCCAATTCCA
AGAGAGTGTTGGCCGTGTTAAGGCCGTTGAAGATAACTATCAGCAACTTT
AAGGAAAACGAAGTACTTAGCGTCTCTAATCACCCGAAGAAAGAGGGAAT
GGGCAAGCGCGAAGTTTTGCTGACTAAGACTGTTTACATTGAGCGGACTG
ATTTCAGAATGGTTGATGAGAAAGGGTATTATGGCCTTGCACCTGGAAAG
AGTGCAATGTTGCGCTACGCGTATCCAATCAAGGTCATGGATGTGATTAA
AGAAGGCGAAGAGGTTGTGGAACTGGTGGCCGAAATGGACTACAGTAAGT
CTACGAAGCCAAAGGGCGTTCTTCATTGGGTCGGGGAGAATGCAATCTCC
TTCGAGGCTCGTCTGTATAGTACCCTTTTCAAGAGTCCAGACCCTTCAGT
TCTAAAGGACGATTGGCTAAACGATTTGAACGAGGAAGGTGAAGTTGTTT
TGAAGAACTGTTTGATAGAAGAAAGCGTTAAGGATTCAAAGGCGGGGGAA
ACATTCCAGTTTGAACGAAAAGGATACTTCACAGTTGATTCAGATAGCTC
TACTGATAAGATGGTATTCAATATGACAGTTTCACTACGGGACTCGCGTT
AA
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