Ggra9094.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9094.t1
Unique NameGgra9094.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length300
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:176063..176962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9094Ggra9094Gracilaria gracilis GNS1m malegenetig00000176_pilon 176063..176962 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9094.t1.start1Ggra9094.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 176063..176065 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9094.t1.CDS1Ggra9094.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 176063..176962 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9094.t1.exon1Ggra9094.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 176063..176962 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9094.t1.stop1Ggra9094.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 176960..176962 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9094.t1Ggra9094.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 176063..176962 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9094.t1 ID=Ggra9094.t1|Name=Ggra9094.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=300bp
MIKRLKWNVLHADDGDDPGGLSSSSDESEQELPSAAALKILIENDPHLNP
SGDARDVLQSKELRMLSQAHPRKRKRSADDHLEQGSSSDGEQYLTSDFDD
NDEKQDQTNEIHSNEQPPEDLGYGFSEWHECILCRGKKFYNQEDLESHIQ
SKKHLKAVRKQSALTPQLEVDKGKHEPQTERTSDVDDEEDVERERRHPTV
IAPTPQPLSSSRIRSKSKAKSEHSTKDSQSVLVTEESAIPDHDNKVKEEH
RREAQADEARKRTKRKKEAAKRKLKSLKRRKWEKRNKEKEEFKPETLCQ*
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spliced messenger RNA

>Ggra9094.t1 ID=Ggra9094.t1|Name=Ggra9094.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00000176_pilon:176063..176962+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCAAAAGGCTCAAATGGAACGTACTCCACGCTGACGATGGCGATGA
TCCTGGCGGTCTATCCTCTTCTTCAGATGAATCTGAGCAGGAGCTTCCAT
CAGCGGCCGCGCTTAAGATTCTAATTGAAAATGACCCACATCTTAATCCG
TCTGGTGACGCTCGTGATGTTCTTCAGTCGAAAGAGCTACGTATGCTTTC
CCAGGCTCATCCTCGCAAGAGAAAGAGAAGTGCTGATGACCACTTAGAAC
AAGGGAGCTCTTCGGACGGAGAGCAATATTTGACTTCCGACTTTGACGAC
AACGATGAAAAACAAGACCAAACGAATGAAATACATTCAAACGAACAGCC
TCCAGAAGATTTAGGCTACGGTTTCTCTGAATGGCACGAATGTATCCTGT
GCCGGGGCAAGAAATTTTACAATCAAGAAGACCTAGAGAGTCATATTCAG
TCCAAAAAGCATTTGAAAGCCGTTCGAAAACAAAGCGCACTGACTCCGCA
GCTGGAGGTTGACAAAGGAAAACATGAGCCACAAACGGAGAGAACATCCG
ACGTGGATGACGAAGAAGATGTCGAGCGAGAGAGGCGCCACCCTACGGTT
ATAGCGCCAACACCGCAACCGTTGAGTTCTTCTAGAATCAGAAGCAAATC
GAAAGCGAAATCAGAGCACTCTACCAAAGATTCTCAATCAGTTCTTGTAA
CCGAAGAAAGTGCTATACCGGATCATGACAACAAAGTAAAGGAAGAACAC
CGACGCGAAGCTCAAGCCGATGAAGCTAGAAAACGGACAAAGCGGAAAAA
AGAGGCGGCAAAGCGTAAACTGAAATCTTTGAAGCGACGAAAATGGGAAA
AGCGGAACAAAGAAAAGGAAGAATTCAAGCCGGAAACACTATGTCAGTGA
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protein sequence of Ggra9094.t1

>Ggra9094.t1 ID=Ggra9094.t1|Name=Ggra9094.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=300bp
MIKRLKWNVLHADDGDDPGGLSSSSDESEQELPSAAALKILIENDPHLNP
SGDARDVLQSKELRMLSQAHPRKRKRSADDHLEQGSSSDGEQYLTSDFDD
NDEKQDQTNEIHSNEQPPEDLGYGFSEWHECILCRGKKFYNQEDLESHIQ
SKKHLKAVRKQSALTPQLEVDKGKHEPQTERTSDVDDEEDVERERRHPTV
IAPTPQPLSSSRIRSKSKAKSEHSTKDSQSVLVTEESAIPDHDNKVKEEH
RREAQADEARKRTKRKKEAAKRKLKSLKRRKWEKRNKEKEEFKPETLCQ*
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mRNA from alignment at tig00000176_pilon:176063..176962+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9094.t1 ID=Ggra9094.t1|Name=Ggra9094.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00000176_pilon:176063..176962+ (Gracilaria gracilis GNS1m male)
ATGATCAAAAGGCTCAAATGGAACGTACTCCACGCTGACGATGGCGATGA
TCCTGGCGGTCTATCCTCTTCTTCAGATGAATCTGAGCAGGAGCTTCCAT
CAGCGGCCGCGCTTAAGATTCTAATTGAAAATGACCCACATCTTAATCCG
TCTGGTGACGCTCGTGATGTTCTTCAGTCGAAAGAGCTACGTATGCTTTC
CCAGGCTCATCCTCGCAAGAGAAAGAGAAGTGCTGATGACCACTTAGAAC
AAGGGAGCTCTTCGGACGGAGAGCAATATTTGACTTCCGACTTTGACGAC
AACGATGAAAAACAAGACCAAACGAATGAAATACATTCAAACGAACAGCC
TCCAGAAGATTTAGGCTACGGTTTCTCTGAATGGCACGAATGTATCCTGT
GCCGGGGCAAGAAATTTTACAATCAAGAAGACCTAGAGAGTCATATTCAG
TCCAAAAAGCATTTGAAAGCCGTTCGAAAACAAAGCGCACTGACTCCGCA
GCTGGAGGTTGACAAAGGAAAACATGAGCCACAAACGGAGAGAACATCCG
ACGTGGATGACGAAGAAGATGTCGAGCGAGAGAGGCGCCACCCTACGGTT
ATAGCGCCAACACCGCAACCGTTGAGTTCTTCTAGAATCAGAAGCAAATC
GAAAGCGAAATCAGAGCACTCTACCAAAGATTCTCAATCAGTTCTTGTAA
CCGAAGAAAGTGCTATACCGGATCATGACAACAAAGTAAAGGAAGAACAC
CGACGCGAAGCTCAAGCCGATGAAGCTAGAAAACGGACAAAGCGGAAAAA
AGAGGCGGCAAAGCGTAAACTGAAATCTTTGAAGCGACGAAAATGGGAAA
AGCGGAACAAAGAAAAGGAAGAATTCAAGCCGGAAACACTATGTCAGTGA
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Coding sequence (CDS) from alignment at tig00000176_pilon:176063..176962+

>Ggra9094.t1 ID=Ggra9094.t1|Name=Ggra9094.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=900bp|location=Sequence derived from alignment at tig00000176_pilon:176063..176962+ (Gracilaria gracilis GNS1m male)
ATGATCAAAAGGCTCAAATGGAACGTACTCCACGCTGACGATGGCGATGA
TCCTGGCGGTCTATCCTCTTCTTCAGATGAATCTGAGCAGGAGCTTCCAT
CAGCGGCCGCGCTTAAGATTCTAATTGAAAATGACCCACATCTTAATCCG
TCTGGTGACGCTCGTGATGTTCTTCAGTCGAAAGAGCTACGTATGCTTTC
CCAGGCTCATCCTCGCAAGAGAAAGAGAAGTGCTGATGACCACTTAGAAC
AAGGGAGCTCTTCGGACGGAGAGCAATATTTGACTTCCGACTTTGACGAC
AACGATGAAAAACAAGACCAAACGAATGAAATACATTCAAACGAACAGCC
TCCAGAAGATTTAGGCTACGGTTTCTCTGAATGGCACGAATGTATCCTGT
GCCGGGGCAAGAAATTTTACAATCAAGAAGACCTAGAGAGTCATATTCAG
TCCAAAAAGCATTTGAAAGCCGTTCGAAAACAAAGCGCACTGACTCCGCA
GCTGGAGGTTGACAAAGGAAAACATGAGCCACAAACGGAGAGAACATCCG
ACGTGGATGACGAAGAAGATGTCGAGCGAGAGAGGCGCCACCCTACGGTT
ATAGCGCCAACACCGCAACCGTTGAGTTCTTCTAGAATCAGAAGCAAATC
GAAAGCGAAATCAGAGCACTCTACCAAAGATTCTCAATCAGTTCTTGTAA
CCGAAGAAAGTGCTATACCGGATCATGACAACAAAGTAAAGGAAGAACAC
CGACGCGAAGCTCAAGCCGATGAAGCTAGAAAACGGACAAAGCGGAAAAA
AGAGGCGGCAAAGCGTAAACTGAAATCTTTGAAGCGACGAAAATGGGAAA
AGCGGAACAAAGAAAAGGAAGAATTCAAGCCGGAAACACTATGTCAGTGA
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