Ggra909.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra909.t1
Unique Name	Ggra909.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	467

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000049_pilon	contig	tig00000049_pilon:326350..327750 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra909	Ggra909	Gracilaria gracilis GNS1m male	gene	tig00000049_pilon 326350..327750 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra909.t1.start1	Ggra909.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000049_pilon 326350..326352 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra909.t1.CDS1	Ggra909.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000049_pilon 326350..327750 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra909.t1.exon1	Ggra909.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000049_pilon 326350..327750 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra909.t1.stop1	Ggra909.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000049_pilon 327748..327750 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra909.t1	Ggra909.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000049_pilon 326350..327750 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000049_pilon:326350..327750+
coding sequence from alignment at tig00000049_pilon:326350..327750+

mRNA sequence

>Ggra909.t1 ID=Ggra909.t1|Name=Ggra909.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=467bp
MLVLTIPISSGIVNALVFLVFDFLLLTLFASALQALQWRSVRRRLLKESR
IVQLSESPYGPLAVGIRNDHTFRHHVLVIVHFIFLLLLFLHALGINGRTA
QTPRAISRSFVTGLANASQFGIDRISARQFSNCLTYSEPSISYYPLAFDT
IPPAIVSDPVGLRDENSSIVPFDHTSFVCQTFNLDPLIVVPSCGESDLDC
SNLNITSRTTLVATRSTQPFVKSIVNLAGNPPPLLSFHLSARLEDVSQPE
QHPLGSYNRLICRQLPKREVADAAANVVSFNCLFGKWNQNASLFTFRLGS
ATTTAEGSSNETWNSLVDMGLPIAFTATTAQMSIEWRADLAGEHIFVEGL
FGLKNDRLTARAFLDLLVARAVVPTFADANNTELREQVPFNVTDIHVAAA
AGYVILFVFVVSLTIVLRFIREGDEPNILTWGGLSRMLDNAFSDETTRRD
GSLRVSMKSLEKHVFL*

spliced messenger RNA

>Ggra909.t1 ID=Ggra909.t1|Name=Ggra909.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1401bp|location=Sequence derived from alignment at tig00000049_pilon:326350..327750+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGTCCTCACCATTCCAATATCCTCCGGTATTGTCAACGCCCTCGT
CTTCCTCGTTTTCGATTTTCTTCTTCTCACTCTCTTCGCCTCTGCGTTGC
AAGCCCTGCAATGGCGTTCCGTCCGTCGCCGTCTGCTAAAGGAAAGCCGA
ATCGTTCAACTCTCCGAGTCGCCATACGGCCCGCTTGCCGTCGGCATTCG
AAATGATCATACGTTCCGTCATCACGTTTTGGTCATTGTTCATTTCATAT
TTCTGCTACTGTTGTTCTTACACGCACTGGGCATCAACGGCCGCACGGCA
CAGACCCCACGTGCCATCTCGCGCTCGTTCGTCACTGGGCTTGCGAACGC
ATCTCAGTTCGGAATTGATCGCATTTCGGCCCGACAGTTTTCCAACTGCT
TAACGTATTCAGAACCTTCCATTTCGTACTATCCGTTGGCATTTGACACC
ATTCCGCCGGCAATCGTCTCCGACCCCGTCGGACTTCGCGATGAGAATAG
CTCAATTGTTCCTTTCGATCACACTTCGTTCGTCTGTCAGACTTTCAATC
TTGATCCATTGATCGTGGTGCCAAGCTGTGGTGAATCTGATCTTGACTGC
AGCAACCTCAACATCACATCTCGTACCACTCTTGTTGCTACTCGAAGCAC
CCAGCCCTTTGTCAAATCTATCGTCAACTTAGCCGGTAATCCCCCGCCTC
TTCTTTCGTTTCACTTATCAGCGCGCCTCGAAGACGTTTCGCAGCCGGAG
CAGCATCCTTTGGGATCCTACAACCGCCTTATCTGTCGTCAATTGCCTAA
AAGAGAGGTAGCAGATGCTGCTGCGAATGTTGTATCATTCAATTGCTTGT
TCGGGAAGTGGAATCAGAATGCGTCGTTGTTCACGTTTCGCCTGGGCTCT
GCAACCACAACTGCCGAGGGTTCCTCCAATGAAACATGGAATTCCCTTGT
TGATATGGGTCTTCCTATCGCATTCACGGCCACCACGGCCCAGATGTCGA
TTGAATGGCGAGCAGATCTTGCTGGAGAACATATCTTTGTCGAAGGACTA
TTTGGACTTAAGAACGACAGGCTGACTGCACGTGCGTTCCTTGATTTGCT
GGTTGCTCGAGCCGTCGTGCCGACGTTTGCAGATGCAAATAACACGGAAC
TTCGTGAACAAGTTCCTTTTAACGTCACAGACATACATGTTGCGGCGGCT
GCAGGATACGTGATTTTGTTCGTGTTCGTTGTTTCTCTGACTATAGTGTT
GAGATTCATACGAGAAGGGGATGAACCGAATATTCTCACTTGGGGTGGTC
TTTCTCGAATGCTGGATAACGCATTCAGTGATGAAACCACGAGGAGAGAT
GGATCACTTCGTGTGTCAATGAAGAGCTTGGAGAAGCATGTATTCTTGTG
A

protein sequence of Ggra909.t1

>Ggra909.t1 ID=Ggra909.t1|Name=Ggra909.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=467bp
MLVLTIPISSGIVNALVFLVFDFLLLTLFASALQALQWRSVRRRLLKESR
IVQLSESPYGPLAVGIRNDHTFRHHVLVIVHFIFLLLLFLHALGINGRTA
QTPRAISRSFVTGLANASQFGIDRISARQFSNCLTYSEPSISYYPLAFDT
IPPAIVSDPVGLRDENSSIVPFDHTSFVCQTFNLDPLIVVPSCGESDLDC
SNLNITSRTTLVATRSTQPFVKSIVNLAGNPPPLLSFHLSARLEDVSQPE
QHPLGSYNRLICRQLPKREVADAAANVVSFNCLFGKWNQNASLFTFRLGS
ATTTAEGSSNETWNSLVDMGLPIAFTATTAQMSIEWRADLAGEHIFVEGL
FGLKNDRLTARAFLDLLVARAVVPTFADANNTELREQVPFNVTDIHVAAA
AGYVILFVFVVSLTIVLRFIREGDEPNILTWGGLSRMLDNAFSDETTRRD
GSLRVSMKSLEKHVFL*

mRNA from alignment at tig00000049_pilon:326350..327750+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra909.t1 ID=Ggra909.t1|Name=Ggra909.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1401bp|location=Sequence derived from alignment at tig00000049_pilon:326350..327750+ (Gracilaria gracilis GNS1m male)
ATGCTCGTCCTCACCATTCCAATATCCTCCGGTATTGTCAACGCCCTCGT
CTTCCTCGTTTTCGATTTTCTTCTTCTCACTCTCTTCGCCTCTGCGTTGC
AAGCCCTGCAATGGCGTTCCGTCCGTCGCCGTCTGCTAAAGGAAAGCCGA
ATCGTTCAACTCTCCGAGTCGCCATACGGCCCGCTTGCCGTCGGCATTCG
AAATGATCATACGTTCCGTCATCACGTTTTGGTCATTGTTCATTTCATAT
TTCTGCTACTGTTGTTCTTACACGCACTGGGCATCAACGGCCGCACGGCA
CAGACCCCACGTGCCATCTCGCGCTCGTTCGTCACTGGGCTTGCGAACGC
ATCTCAGTTCGGAATTGATCGCATTTCGGCCCGACAGTTTTCCAACTGCT
TAACGTATTCAGAACCTTCCATTTCGTACTATCCGTTGGCATTTGACACC
ATTCCGCCGGCAATCGTCTCCGACCCCGTCGGACTTCGCGATGAGAATAG
CTCAATTGTTCCTTTCGATCACACTTCGTTCGTCTGTCAGACTTTCAATC
TTGATCCATTGATCGTGGTGCCAAGCTGTGGTGAATCTGATCTTGACTGC
AGCAACCTCAACATCACATCTCGTACCACTCTTGTTGCTACTCGAAGCAC
CCAGCCCTTTGTCAAATCTATCGTCAACTTAGCCGGTAATCCCCCGCCTC
TTCTTTCGTTTCACTTATCAGCGCGCCTCGAAGACGTTTCGCAGCCGGAG
CAGCATCCTTTGGGATCCTACAACCGCCTTATCTGTCGTCAATTGCCTAA
AAGAGAGGTAGCAGATGCTGCTGCGAATGTTGTATCATTCAATTGCTTGT
TCGGGAAGTGGAATCAGAATGCGTCGTTGTTCACGTTTCGCCTGGGCTCT
GCAACCACAACTGCCGAGGGTTCCTCCAATGAAACATGGAATTCCCTTGT
TGATATGGGTCTTCCTATCGCATTCACGGCCACCACGGCCCAGATGTCGA
TTGAATGGCGAGCAGATCTTGCTGGAGAACATATCTTTGTCGAAGGACTA
TTTGGACTTAAGAACGACAGGCTGACTGCACGTGCGTTCCTTGATTTGCT
GGTTGCTCGAGCCGTCGTGCCGACGTTTGCAGATGCAAATAACACGGAAC
TTCGTGAACAAGTTCCTTTTAACGTCACAGACATACATGTTGCGGCGGCT
GCAGGATACGTGATTTTGTTCGTGTTCGTTGTTTCTCTGACTATAGTGTT
GAGATTCATACGAGAAGGGGATGAACCGAATATTCTCACTTGGGGTGGTC
TTTCTCGAATGCTGGATAACGCATTCAGTGATGAAACCACGAGGAGAGAT
GGATCACTTCGTGTGTCAATGAAGAGCTTGGAGAAGCATGTATTCTTGTG
A

Coding sequence (CDS) from alignment at tig00000049_pilon:326350..327750+

>Ggra909.t1 ID=Ggra909.t1|Name=Ggra909.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1401bp|location=Sequence derived from alignment at tig00000049_pilon:326350..327750+ (Gracilaria gracilis GNS1m male)
ATGCTCGTCCTCACCATTCCAATATCCTCCGGTATTGTCAACGCCCTCGT
CTTCCTCGTTTTCGATTTTCTTCTTCTCACTCTCTTCGCCTCTGCGTTGC
AAGCCCTGCAATGGCGTTCCGTCCGTCGCCGTCTGCTAAAGGAAAGCCGA
ATCGTTCAACTCTCCGAGTCGCCATACGGCCCGCTTGCCGTCGGCATTCG
AAATGATCATACGTTCCGTCATCACGTTTTGGTCATTGTTCATTTCATAT
TTCTGCTACTGTTGTTCTTACACGCACTGGGCATCAACGGCCGCACGGCA
CAGACCCCACGTGCCATCTCGCGCTCGTTCGTCACTGGGCTTGCGAACGC
ATCTCAGTTCGGAATTGATCGCATTTCGGCCCGACAGTTTTCCAACTGCT
TAACGTATTCAGAACCTTCCATTTCGTACTATCCGTTGGCATTTGACACC
ATTCCGCCGGCAATCGTCTCCGACCCCGTCGGACTTCGCGATGAGAATAG
CTCAATTGTTCCTTTCGATCACACTTCGTTCGTCTGTCAGACTTTCAATC
TTGATCCATTGATCGTGGTGCCAAGCTGTGGTGAATCTGATCTTGACTGC
AGCAACCTCAACATCACATCTCGTACCACTCTTGTTGCTACTCGAAGCAC
CCAGCCCTTTGTCAAATCTATCGTCAACTTAGCCGGTAATCCCCCGCCTC
TTCTTTCGTTTCACTTATCAGCGCGCCTCGAAGACGTTTCGCAGCCGGAG
CAGCATCCTTTGGGATCCTACAACCGCCTTATCTGTCGTCAATTGCCTAA
AAGAGAGGTAGCAGATGCTGCTGCGAATGTTGTATCATTCAATTGCTTGT
TCGGGAAGTGGAATCAGAATGCGTCGTTGTTCACGTTTCGCCTGGGCTCT
GCAACCACAACTGCCGAGGGTTCCTCCAATGAAACATGGAATTCCCTTGT
TGATATGGGTCTTCCTATCGCATTCACGGCCACCACGGCCCAGATGTCGA
TTGAATGGCGAGCAGATCTTGCTGGAGAACATATCTTTGTCGAAGGACTA
TTTGGACTTAAGAACGACAGGCTGACTGCACGTGCGTTCCTTGATTTGCT
GGTTGCTCGAGCCGTCGTGCCGACGTTTGCAGATGCAAATAACACGGAAC
TTCGTGAACAAGTTCCTTTTAACGTCACAGACATACATGTTGCGGCGGCT
GCAGGATACGTGATTTTGTTCGTGTTCGTTGTTTCTCTGACTATAGTGTT
GAGATTCATACGAGAAGGGGATGAACCGAATATTCTCACTTGGGGTGGTC
TTTCTCGAATGCTGGATAACGCATTCAGTGATGAAACCACGAGGAGAGAT
GGATCACTTCGTGTGTCAATGAAGAGCTTGGAGAAGCATGTATTCTTGTG
A