Ggra9079.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9079.t1
Unique NameGgra9079.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length278
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:136794..137706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog78898.MVEG_04553T0
Max annot lvl4751|Fungi
Evalue1.35e-14
EggNOG OGs2E3H1@1|root,2SAJC@2759|Eukaryota,3ARBF@33154|Opisthokonta,3PFVF@4751|Fungi
DescriptionAllomyces macrogynus ATCC 38327
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9079Ggra9079Gracilaria gracilis GNS1m malegenetig00000176_pilon 136794..137706 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9079.t1Ggra9079.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 136794..137706 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9079.t1.start1Ggra9079.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 136794..136796 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9079.t1.CDS1Ggra9079.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 136794..136895 +
Ggra9079.t1.CDS2Ggra9079.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000176_pilon 136975..137706 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9079.t1.exon1Ggra9079.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 136794..136895 +
Ggra9079.t1.exon2Ggra9079.t1.exon2Gracilaria gracilis GNS1m maleexontig00000176_pilon 136975..137706 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9079.t1.intron1Ggra9079.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000176_pilon 136896..136974 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9079.t1.stop1Ggra9079.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 137704..137706 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9079.t1 ID=Ggra9079.t1|Name=Ggra9079.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=278bp
MSSMQYTLVATALIFAHTVLCHSTISGPQPISPGYCRLEDDPKLSCAGPC
DLKGAEGGYSNFNSPDKPAAVYRRGQRFPIKYHRNNHGPGGFIRVSLVKP
EDIMDKAIHERNAFHYSCWGAYTREAKPNELSTDKFGFTIVGNDGEKHSA
PKAYYIAFITIPSVVPDGKYVLGWVWYGGTGSNPIQDNKKVEPQPWGYFG
DYWACSYVHVKGGLQLSKSYDPVFVNDMKGFSSEGCMAANDEPGTCSKEP
CEVTAFYRKPRPFTKGKKPRPITSKNF*
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spliced messenger RNA

>Ggra9079.t1 ID=Ggra9079.t1|Name=Ggra9079.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=834bp|location=Sequence derived from alignment at tig00000176_pilon:136794..137706+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAGTATGCAGTATACTTTGGTGGCTACAGCCTTGATCTTCGCTCA
TACGGTGCTGTGCCACTCCACTATAAGTGGCCCGCAGCCTATTTCTCCAG
GGTATTGCCGGCTCGAAGACGACCCTAAGCTAAGCTGTGCTGGTCCATGC
GACTTAAAGGGCGCCGAAGGTGGCTACTCGAACTTCAACAGTCCTGACAA
ACCTGCTGCTGTGTATAGACGCGGCCAGAGGTTTCCAATCAAATACCACA
GAAACAACCATGGTCCCGGTGGCTTTATCCGAGTCAGTCTCGTGAAACCG
GAGGATATTATGGACAAAGCCATTCATGAGCGAAACGCATTTCACTACAG
CTGTTGGGGTGCATACACGAGGGAGGCTAAACCGAACGAGCTTTCAACCG
ATAAGTTTGGTTTCACGATTGTCGGCAATGACGGTGAGAAACACTCAGCC
CCAAAGGCATACTATATTGCATTCATAACGATACCCTCAGTTGTTCCTGA
TGGCAAGTACGTTCTCGGATGGGTTTGGTATGGCGGTACAGGAAGCAATC
CCATTCAAGATAACAAGAAAGTGGAACCCCAGCCATGGGGTTATTTCGGT
GACTATTGGGCATGTTCGTACGTCCATGTCAAAGGCGGCCTCCAGCTCTC
CAAATCATATGATCCAGTGTTTGTTAACGACATGAAGGGCTTTTCTTCTG
AGGGTTGCATGGCTGCGAATGATGAACCCGGGACTTGCTCCAAGGAACCA
TGCGAAGTTACTGCTTTCTACCGCAAGCCGCGACCGTTCACTAAGGGAAA
GAAGCCGCGTCCAATAACCTCAAAAAACTTCTAG
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protein sequence of Ggra9079.t1

>Ggra9079.t1 ID=Ggra9079.t1|Name=Ggra9079.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=278bp
MSSMQYTLVATALIFAHTVLCHSTISGPQPISPGYCRLEDDPKLSCAGPC
DLKGAEGGYSNFNSPDKPAAVYRRGQRFPIKYHRNNHGPGGFIRVSLVKP
EDIMDKAIHERNAFHYSCWGAYTREAKPNELSTDKFGFTIVGNDGEKHSA
PKAYYIAFITIPSVVPDGKYVLGWVWYGGTGSNPIQDNKKVEPQPWGYFG
DYWACSYVHVKGGLQLSKSYDPVFVNDMKGFSSEGCMAANDEPGTCSKEP
CEVTAFYRKPRPFTKGKKPRPITSKNF*
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mRNA from alignment at tig00000176_pilon:136794..137706+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9079.t1 ID=Ggra9079.t1|Name=Ggra9079.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=913bp|location=Sequence derived from alignment at tig00000176_pilon:136794..137706+ (Gracilaria gracilis GNS1m male)
ATGAGCAGTATGCAGTATACTTTGGTGGCTACAGCCTTGATCTTCGCTCA
TACGGTGCTGTGCCACTCCACTATAAGTGGCCCGCAGCCTATTTCTCCAG
GGGTAAGTTGTATCGTGATTTGTTTTTCATGCACAAGAGATGGTTGATAT
TAAGCTTGAGTACTAACTTTCTTGGGTACAGTATTGCCGGCTCGAAGACG
ACCCTAAGCTAAGCTGTGCTGGTCCATGCGACTTAAAGGGCGCCGAAGGT
GGCTACTCGAACTTCAACAGTCCTGACAAACCTGCTGCTGTGTATAGACG
CGGCCAGAGGTTTCCAATCAAATACCACAGAAACAACCATGGTCCCGGTG
GCTTTATCCGAGTCAGTCTCGTGAAACCGGAGGATATTATGGACAAAGCC
ATTCATGAGCGAAACGCATTTCACTACAGCTGTTGGGGTGCATACACGAG
GGAGGCTAAACCGAACGAGCTTTCAACCGATAAGTTTGGTTTCACGATTG
TCGGCAATGACGGTGAGAAACACTCAGCCCCAAAGGCATACTATATTGCA
TTCATAACGATACCCTCAGTTGTTCCTGATGGCAAGTACGTTCTCGGATG
GGTTTGGTATGGCGGTACAGGAAGCAATCCCATTCAAGATAACAAGAAAG
TGGAACCCCAGCCATGGGGTTATTTCGGTGACTATTGGGCATGTTCGTAC
GTCCATGTCAAAGGCGGCCTCCAGCTCTCCAAATCATATGATCCAGTGTT
TGTTAACGACATGAAGGGCTTTTCTTCTGAGGGTTGCATGGCTGCGAATG
ATGAACCCGGGACTTGCTCCAAGGAACCATGCGAAGTTACTGCTTTCTAC
CGCAAGCCGCGACCGTTCACTAAGGGAAAGAAGCCGCGTCCAATAACCTC
AAAAAACTTCTAG
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Coding sequence (CDS) from alignment at tig00000176_pilon:136794..137706+

>Ggra9079.t1 ID=Ggra9079.t1|Name=Ggra9079.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=834bp|location=Sequence derived from alignment at tig00000176_pilon:136794..137706+ (Gracilaria gracilis GNS1m male)
ATGAGCAGTATGCAGTATACTTTGGTGGCTACAGCCTTGATCTTCGCTCA
TACGGTGCTGTGCCACTCCACTATAAGTGGCCCGCAGCCTATTTCTCCAG
GGTATTGCCGGCTCGAAGACGACCCTAAGCTAAGCTGTGCTGGTCCATGC
GACTTAAAGGGCGCCGAAGGTGGCTACTCGAACTTCAACAGTCCTGACAA
ACCTGCTGCTGTGTATAGACGCGGCCAGAGGTTTCCAATCAAATACCACA
GAAACAACCATGGTCCCGGTGGCTTTATCCGAGTCAGTCTCGTGAAACCG
GAGGATATTATGGACAAAGCCATTCATGAGCGAAACGCATTTCACTACAG
CTGTTGGGGTGCATACACGAGGGAGGCTAAACCGAACGAGCTTTCAACCG
ATAAGTTTGGTTTCACGATTGTCGGCAATGACGGTGAGAAACACTCAGCC
CCAAAGGCATACTATATTGCATTCATAACGATACCCTCAGTTGTTCCTGA
TGGCAAGTACGTTCTCGGATGGGTTTGGTATGGCGGTACAGGAAGCAATC
CCATTCAAGATAACAAGAAAGTGGAACCCCAGCCATGGGGTTATTTCGGT
GACTATTGGGCATGTTCGTACGTCCATGTCAAAGGCGGCCTCCAGCTCTC
CAAATCATATGATCCAGTGTTTGTTAACGACATGAAGGGCTTTTCTTCTG
AGGGTTGCATGGCTGCGAATGATGAACCCGGGACTTGCTCCAAGGAACCA
TGCGAAGTTACTGCTTTCTACCGCAAGCCGCGACCGTTCACTAAGGGAAA
GAAGCCGCGTCCAATAACCTCAAAAAACTTCTAG
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