Ggra907.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra907.t1
Unique NameGgra907.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length393
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:292774..293952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36331.EPrPI00000024717
Max annot lvl121069|Pythiales
Evalue1.46e-05
EggNOG OGs2E3H1@1|root,2SAJC@2759|Eukaryota,1ME2R@121069|Pythiales
Descriptionfunction. Source PGD
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra907Ggra907Gracilaria gracilis GNS1m malegenetig00000049_pilon 292774..293952 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra907.t1.start1Ggra907.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000049_pilon 292774..292776 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra907.t1.CDS1Ggra907.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000049_pilon 292774..293952 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra907.t1.exon1Ggra907.t1.exon1Gracilaria gracilis GNS1m maleexontig00000049_pilon 292774..293952 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra907.t1.stop1Ggra907.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000049_pilon 293950..293952 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra907.t1Ggra907.t1Gracilaria gracilis GNS1m malepolypeptidetig00000049_pilon 292774..293952 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra907.t1 ID=Ggra907.t1|Name=Ggra907.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=393bp
MTVASSRPPLSLSLLLLALLAQLRPLHAHQAIAYPWPISNDGACRVGLFK
NCPGPCPTGDLRLDQTPDAPSITLRRGQSFDVHVKRNNHAGGFTRWSVVN
VRDMYRRDKHEQGAFYFTCGDQRLTHCTARNRLRDCTYDARNQYYRHALR
VPTVYADGVYVLGFAWYGGTQAPGTGGVFGDYYDCMYVQIKGGPFSKSFQ
PTFDIAKSQTGRNGLCAARTTWLGDCKKEPCFNRKSGMRVPYQFANGRQP
PKLRSSAFNKPYRRKKVGKNAPRVVALSVREADRPSIVLGHSRRQRVVKL
RLKKNSRITVTCDVSGAVRHVIFYRNGIPERKETNAPYSIAGVARRRVKG
KIVSRYQPWNAARGNDFYSLSCVVYGKDGSVQYAKLDVEQSL*
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spliced messenger RNA

>Ggra907.t1 ID=Ggra907.t1|Name=Ggra907.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1179bp|location=Sequence derived from alignment at tig00000049_pilon:292774..293952+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCgtcgcttcgtcgcgcccgccgctgtcgttgtcgctgctgctgct
cgcGCTGCTCGCGCAGCTGCGGCCGCTGCACGCGCATCAGGCCATTGCGT
ACCCGTGGCCCATCTCCAACGACGGCGCGTGCCGCGTGGGGCTGTTCAAG
AACTGCCCAGGCCCGTGTCCAACCGGCGACCTGCGCCTCGACCAGACGCC
CGACGCGCCGTCCATCACGCTGCGTCGCGGCCAATCATTCGACGTGCACG
TCAAACGCAACAACCACGCGGGCGGCTTCACGCGCTGGAGCGTCGTCAAC
GTGCGCGACATGTACCGGCGCGACAAACACGAACAAGGCGCGTTCTACTT
CACGTGCGGCGACCAACGACTGACGCACTGCACGGCGCGAAACCGCCTGC
GCGACTGCACGTACGACGCGCGAAACCAGTACTACCGACACGCGCTGCGC
GTGCCCACCGTGTACGCGGACGGCGTGTACGTGCTGGGCTTTGCGTGGTA
TGGCGGCACGCAGGCGCCTGGTACCGGCGGCGTGTTTGGCGACTATTATG
ACTGCATGTACGTACAGATCAAGGGCGGCCCGTTCAGCAAATCGTTCCAG
CCCACGTTCGATATAGCCAAGTCGCAGACGGGGCGCAACGGGCTGTGCGC
CGCGCGCACCACGTGGCTGGGCGACTGCAAGAAGGAGCCGTGCTTCAACC
GCAAGAGCGGCATGCGCGTTCCGTACCAGTTTGCCAACGGACGCCAGCCG
CCAAAGCTGCGCAGCAGCGCGTTTAACAAGCCGTACCGCAGGAAGAAGGT
GGGCAAGAATGCGCCCAGAGTGGTGGCGCTTTCGGTGAGGGAGGCCGACC
GACCTTCAATCGTTTTGGGCCACTCTAGACGGCAGCGCGTAGTCAAGCTG
AGGCTGAAGAAGAACTCGCGCATTACGGTCACTTGTGACGTGTCGGGCGC
CGTCCGTCATGTGATTTTCTATCGCAACGGCATTCCCGAGCGCAAGGAGA
CTAACGCGCCTTACAGCATTGCTGGCGTGGCGCGCAGACGCGTCAAAGGA
AAGATTGTGAGCAGATATCAGCCGTGGAACGCCGCTCGCGGTAACGACTT
TTACTCGCTCTCGTGCGTGGTTTACGGAAAGGATGGCAGCGTCCAATACG
CAAAGCTGGACGTGGAACAGAGTTTGTGA
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protein sequence of Ggra907.t1

>Ggra907.t1 ID=Ggra907.t1|Name=Ggra907.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=393bp
MTVASSRPPLSLSLLLLALLAQLRPLHAHQAIAYPWPISNDGACRVGLFK
NCPGPCPTGDLRLDQTPDAPSITLRRGQSFDVHVKRNNHAGGFTRWSVVN
VRDMYRRDKHEQGAFYFTCGDQRLTHCTARNRLRDCTYDARNQYYRHALR
VPTVYADGVYVLGFAWYGGTQAPGTGGVFGDYYDCMYVQIKGGPFSKSFQ
PTFDIAKSQTGRNGLCAARTTWLGDCKKEPCFNRKSGMRVPYQFANGRQP
PKLRSSAFNKPYRRKKVGKNAPRVVALSVREADRPSIVLGHSRRQRVVKL
RLKKNSRITVTCDVSGAVRHVIFYRNGIPERKETNAPYSIAGVARRRVKG
KIVSRYQPWNAARGNDFYSLSCVVYGKDGSVQYAKLDVEQSL*
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mRNA from alignment at tig00000049_pilon:292774..293952+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra907.t1 ID=Ggra907.t1|Name=Ggra907.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1179bp|location=Sequence derived from alignment at tig00000049_pilon:292774..293952+ (Gracilaria gracilis GNS1m male)
ATGACCgtcgcttcgtcgcgcccgccgctgtcgttgtcgctgctgctgct
cgcGCTGCTCGCGCAGCTGCGGCCGCTGCACGCGCATCAGGCCATTGCGT
ACCCGTGGCCCATCTCCAACGACGGCGCGTGCCGCGTGGGGCTGTTCAAG
AACTGCCCAGGCCCGTGTCCAACCGGCGACCTGCGCCTCGACCAGACGCC
CGACGCGCCGTCCATCACGCTGCGTCGCGGCCAATCATTCGACGTGCACG
TCAAACGCAACAACCACGCGGGCGGCTTCACGCGCTGGAGCGTCGTCAAC
GTGCGCGACATGTACCGGCGCGACAAACACGAACAAGGCGCGTTCTACTT
CACGTGCGGCGACCAACGACTGACGCACTGCACGGCGCGAAACCGCCTGC
GCGACTGCACGTACGACGCGCGAAACCAGTACTACCGACACGCGCTGCGC
GTGCCCACCGTGTACGCGGACGGCGTGTACGTGCTGGGCTTTGCGTGGTA
TGGCGGCACGCAGGCGCCTGGTACCGGCGGCGTGTTTGGCGACTATTATG
ACTGCATGTACGTACAGATCAAGGGCGGCCCGTTCAGCAAATCGTTCCAG
CCCACGTTCGATATAGCCAAGTCGCAGACGGGGCGCAACGGGCTGTGCGC
CGCGCGCACCACGTGGCTGGGCGACTGCAAGAAGGAGCCGTGCTTCAACC
GCAAGAGCGGCATGCGCGTTCCGTACCAGTTTGCCAACGGACGCCAGCCG
CCAAAGCTGCGCAGCAGCGCGTTTAACAAGCCGTACCGCAGGAAGAAGGT
GGGCAAGAATGCGCCCAGAGTGGTGGCGCTTTCGGTGAGGGAGGCCGACC
GACCTTCAATCGTTTTGGGCCACTCTAGACGGCAGCGCGTAGTCAAGCTG
AGGCTGAAGAAGAACTCGCGCATTACGGTCACTTGTGACGTGTCGGGCGC
CGTCCGTCATGTGATTTTCTATCGCAACGGCATTCCCGAGCGCAAGGAGA
CTAACGCGCCTTACAGCATTGCTGGCGTGGCGCGCAGACGCGTCAAAGGA
AAGATTGTGAGCAGATATCAGCCGTGGAACGCCGCTCGCGGTAACGACTT
TTACTCGCTCTCGTGCGTGGTTTACGGAAAGGATGGCAGCGTCCAATACG
CAAAGCTGGACGTGGAACAGAGTTTGTGA
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Coding sequence (CDS) from alignment at tig00000049_pilon:292774..293952+

>Ggra907.t1 ID=Ggra907.t1|Name=Ggra907.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1179bp|location=Sequence derived from alignment at tig00000049_pilon:292774..293952+ (Gracilaria gracilis GNS1m male)
ATGACCgtcgcttcgtcgcgcccgccgctgtcgttgtcgctgctgctgct
cgcGCTGCTCGCGCAGCTGCGGCCGCTGCACGCGCATCAGGCCATTGCGT
ACCCGTGGCCCATCTCCAACGACGGCGCGTGCCGCGTGGGGCTGTTCAAG
AACTGCCCAGGCCCGTGTCCAACCGGCGACCTGCGCCTCGACCAGACGCC
CGACGCGCCGTCCATCACGCTGCGTCGCGGCCAATCATTCGACGTGCACG
TCAAACGCAACAACCACGCGGGCGGCTTCACGCGCTGGAGCGTCGTCAAC
GTGCGCGACATGTACCGGCGCGACAAACACGAACAAGGCGCGTTCTACTT
CACGTGCGGCGACCAACGACTGACGCACTGCACGGCGCGAAACCGCCTGC
GCGACTGCACGTACGACGCGCGAAACCAGTACTACCGACACGCGCTGCGC
GTGCCCACCGTGTACGCGGACGGCGTGTACGTGCTGGGCTTTGCGTGGTA
TGGCGGCACGCAGGCGCCTGGTACCGGCGGCGTGTTTGGCGACTATTATG
ACTGCATGTACGTACAGATCAAGGGCGGCCCGTTCAGCAAATCGTTCCAG
CCCACGTTCGATATAGCCAAGTCGCAGACGGGGCGCAACGGGCTGTGCGC
CGCGCGCACCACGTGGCTGGGCGACTGCAAGAAGGAGCCGTGCTTCAACC
GCAAGAGCGGCATGCGCGTTCCGTACCAGTTTGCCAACGGACGCCAGCCG
CCAAAGCTGCGCAGCAGCGCGTTTAACAAGCCGTACCGCAGGAAGAAGGT
GGGCAAGAATGCGCCCAGAGTGGTGGCGCTTTCGGTGAGGGAGGCCGACC
GACCTTCAATCGTTTTGGGCCACTCTAGACGGCAGCGCGTAGTCAAGCTG
AGGCTGAAGAAGAACTCGCGCATTACGGTCACTTGTGACGTGTCGGGCGC
CGTCCGTCATGTGATTTTCTATCGCAACGGCATTCCCGAGCGCAAGGAGA
CTAACGCGCCTTACAGCATTGCTGGCGTGGCGCGCAGACGCGTCAAAGGA
AAGATTGTGAGCAGATATCAGCCGTGGAACGCCGCTCGCGGTAACGACTT
TTACTCGCTCTCGTGCGTGGTTTACGGAAAGGATGGCAGCGTCCAATACG
CAAAGCTGGACGTGGAACAGAGTTTGTGA
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