Ggra9066.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9066.t1
Unique NameGgra9066.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length431
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:84850..86142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ07294
PFAMsGround-like,Hint,Kelch_4
Max annot lvl2759|Eukaryota
KEGG koko:K06224,ko:K11990,ko:K16669
KEGG Pathwayko04340,ko04341,ko04391,ko04392,map04340,map04341,map04391,map04392
KEGG ModuleM00678
GOsGO:0003002,GO:0003674,GO:0003824,GO:0004175,GO:0005102,GO:0005488,GO:0005496,GO:0005515,GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0007154,GO:0007267,GO:0007275,GO:0007350,GO:0007365,GO:0007367,GO:0007389,GO:0008150,GO:0008152,GO:0008233,GO:0008289,GO:0009790,GO:0009880,GO:0009987,GO:0010467,GO:0015485,GO:0016020,GO:0016485,GO:0016540,GO:0016787,GO:0019538,GO:0023052,GO:0032501,GO:0032502,GO:0032934,GO:0035282,GO:0036094,GO:0043170,GO:0043178,GO:0044238,GO:0044464,GO:0048856,GO:0051604,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0140096,GO:1901564
Evalue7.99e-23
EggNOG OGsKOG3638@1|root,KOG3638@2759|Eukaryota
Descriptionintein-mediated protein splicing
COG categoryM
BRITEko00000,ko00001,ko00002,ko00536,ko01002,ko04516
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9066Ggra9066Gracilaria gracilis GNS1m malegenetig00000176_pilon 84850..86142 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9066.t1.start1Ggra9066.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 84850..84852 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9066.t1.CDS1Ggra9066.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 84850..86142 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9066.t1.exon1Ggra9066.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 84850..86142 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9066.t1.stop1Ggra9066.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 86140..86142 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9066.t1Ggra9066.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 84850..86142 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9066.t1 ID=Ggra9066.t1|Name=Ggra9066.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=431bp
MLPVSDRQTVPEDAIGTFGLGQFLGGVCPQNISHSETVNEQGVIPHTVMA
INNMPCTDDGSMGVTLDADTALAGVEVSSSTTLINQFKDAGVSAIYGIEN
SARVCGKNQLPAKTLVIIFQPVSAVTIGLDSYFSGRRYMIVDDPSVDGIC
RYSTERRPEPEVEETPTEMDEAVMTPMATVMPEPAPVPAPVPAPVPDTEE
PAVTTEEPVGETDGPSTPGVPGGVVAPDTDIGITEGLTTDEEEPTVSPED
DPICFPADGSVQLEDGSVKRMEQVEIGDRVMVGNKQFSEVFMFSHRLADV
KNTFVKVQLESGQSIEATVGHYLYVNGRLAAASSVKVGDSMELDSGDRVG
VSQVSLVSKKGLYNPQTMHGDIVVNGVRASTFTQAVEVCTASALMAPLRV
VYALFGWSGSFLDGGLDSVANMLPNGAATL*
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spliced messenger RNA

>Ggra9066.t1 ID=Ggra9066.t1|Name=Ggra9066.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1293bp|location=Sequence derived from alignment at tig00000176_pilon:84850..86142+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCCGGTATCCGACCGTCAGACCGTGCCCGAGGACGCCATCGGTAC
ATTCGGTCTCGGCCAATTCCTCGGCGGTGTTTGCCCCCAAAACATCTCAC
ACTCCGAGACCGTCAATGAGCAGGGTGTCATTCCTCACACGGTCATGGCA
ATCAACAACATGCCCTGTACCGATGACGGATCCATGGGCGTGACCCTCGA
CGCCGATACAGCTTTGGCAGGCGTTGAAGTCAGCAGCTCCACTACTCTCA
TCAACCAGTTCAAGGATGCTGGCGTGTCTGCTATCTATGGTATTGAAAAC
TCTGCTCGTGTGTGCGGCAAAAATCAACTGCCCGCAAAGACCTTGGTCAT
TATCTTCCAGCCCGTCAGCGCGGTGACTATCGGCCTGGATTCGTACTTCA
GTGGCCGTCGCTACATGATTGTTGACGATCCTAGTGTTGATGGCATTTGT
CGCTACTCCACCGAACGCCGCCCGGAACCGGAGGTGGAGGAGACTCCGAC
AGAGATGGACGAAGCCGTTATGACTCCGATGGCCACCGTGATGCCAGAAC
CGGCGCCAGTACCGGCGCCAGTACCGGCGCCAGTACCGGATACTGAGGAG
CCTGCGGTTACAACTGAGGAGCCGGTGGGTGAGACCGACGGCCCGAGTAC
ACCCGGTGTTCCGGGTGGCGTTGTTGCGCCCGACACTGACATCGGCATTA
CGGAAGGACTCACAACTGACGAGGAAGAGCCGACGGTATCGCCTGAAGAC
GACCCGATTTGCTTCCCAGCCGACGGGTCTGTGCAACTGGAGGACGGCTC
CGTTAAACGCATGGAGCAGGTGGAGATCGGAGACCGCGTGATGGTTGGCA
ACAAGCAGTTCTCCGAGGTGTTCATGTTCTCTCACCGTCTGGCTGACGTG
AAGAACACGTTTGTGAAGGTGCAGCTGGAGAGTGGACAGAGCATCGAGGC
TACGGTTGGACACTATCTGTACGTGAACGGACGCCTTGCTGCAGCGTCCA
GCGTGAAGGTGGGTGACTCGATGGAGCTGGACTCTGGAGATCGTGTGGGC
GTGTCGCAGGTGTCGCTGGTGAGTAAGAAGGGTCTGTACAACCCGCAGAC
TATGCACGGAGACATCGTGGTGAACGGCGTGAGGGCGAGTACATTCACGC
AGGCTGTGGAGGTGTGCACGGCGTCGGCATTGATGGCGCCGCTGAGGGTT
GTGTACGCGCTGTTCGGCTGGAGCGGAAGCTTCCTGGACGGCGGGCTGGA
TAGTGTAGCCAACATGCTGCCGAATGGCGCGGCGACCTTGTAG
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protein sequence of Ggra9066.t1

>Ggra9066.t1 ID=Ggra9066.t1|Name=Ggra9066.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=431bp
MLPVSDRQTVPEDAIGTFGLGQFLGGVCPQNISHSETVNEQGVIPHTVMA
INNMPCTDDGSMGVTLDADTALAGVEVSSSTTLINQFKDAGVSAIYGIEN
SARVCGKNQLPAKTLVIIFQPVSAVTIGLDSYFSGRRYMIVDDPSVDGIC
RYSTERRPEPEVEETPTEMDEAVMTPMATVMPEPAPVPAPVPAPVPDTEE
PAVTTEEPVGETDGPSTPGVPGGVVAPDTDIGITEGLTTDEEEPTVSPED
DPICFPADGSVQLEDGSVKRMEQVEIGDRVMVGNKQFSEVFMFSHRLADV
KNTFVKVQLESGQSIEATVGHYLYVNGRLAAASSVKVGDSMELDSGDRVG
VSQVSLVSKKGLYNPQTMHGDIVVNGVRASTFTQAVEVCTASALMAPLRV
VYALFGWSGSFLDGGLDSVANMLPNGAATL*
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mRNA from alignment at tig00000176_pilon:84850..86142+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9066.t1 ID=Ggra9066.t1|Name=Ggra9066.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1293bp|location=Sequence derived from alignment at tig00000176_pilon:84850..86142+ (Gracilaria gracilis GNS1m male)
ATGCTGCCGGTATCCGACCGTCAGACCGTGCCCGAGGACGCCATCGGTAC
ATTCGGTCTCGGCCAATTCCTCGGCGGTGTTTGCCCCCAAAACATCTCAC
ACTCCGAGACCGTCAATGAGCAGGGTGTCATTCCTCACACGGTCATGGCA
ATCAACAACATGCCCTGTACCGATGACGGATCCATGGGCGTGACCCTCGA
CGCCGATACAGCTTTGGCAGGCGTTGAAGTCAGCAGCTCCACTACTCTCA
TCAACCAGTTCAAGGATGCTGGCGTGTCTGCTATCTATGGTATTGAAAAC
TCTGCTCGTGTGTGCGGCAAAAATCAACTGCCCGCAAAGACCTTGGTCAT
TATCTTCCAGCCCGTCAGCGCGGTGACTATCGGCCTGGATTCGTACTTCA
GTGGCCGTCGCTACATGATTGTTGACGATCCTAGTGTTGATGGCATTTGT
CGCTACTCCACCGAACGCCGCCCGGAACCGGAGGTGGAGGAGACTCCGAC
AGAGATGGACGAAGCCGTTATGACTCCGATGGCCACCGTGATGCCAGAAC
CGGCGCCAGTACCGGCGCCAGTACCGGCGCCAGTACCGGATACTGAGGAG
CCTGCGGTTACAACTGAGGAGCCGGTGGGTGAGACCGACGGCCCGAGTAC
ACCCGGTGTTCCGGGTGGCGTTGTTGCGCCCGACACTGACATCGGCATTA
CGGAAGGACTCACAACTGACGAGGAAGAGCCGACGGTATCGCCTGAAGAC
GACCCGATTTGCTTCCCAGCCGACGGGTCTGTGCAACTGGAGGACGGCTC
CGTTAAACGCATGGAGCAGGTGGAGATCGGAGACCGCGTGATGGTTGGCA
ACAAGCAGTTCTCCGAGGTGTTCATGTTCTCTCACCGTCTGGCTGACGTG
AAGAACACGTTTGTGAAGGTGCAGCTGGAGAGTGGACAGAGCATCGAGGC
TACGGTTGGACACTATCTGTACGTGAACGGACGCCTTGCTGCAGCGTCCA
GCGTGAAGGTGGGTGACTCGATGGAGCTGGACTCTGGAGATCGTGTGGGC
GTGTCGCAGGTGTCGCTGGTGAGTAAGAAGGGTCTGTACAACCCGCAGAC
TATGCACGGAGACATCGTGGTGAACGGCGTGAGGGCGAGTACATTCACGC
AGGCTGTGGAGGTGTGCACGGCGTCGGCATTGATGGCGCCGCTGAGGGTT
GTGTACGCGCTGTTCGGCTGGAGCGGAAGCTTCCTGGACGGCGGGCTGGA
TAGTGTAGCCAACATGCTGCCGAATGGCGCGGCGACCTTGTAG
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Coding sequence (CDS) from alignment at tig00000176_pilon:84850..86142+

>Ggra9066.t1 ID=Ggra9066.t1|Name=Ggra9066.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1293bp|location=Sequence derived from alignment at tig00000176_pilon:84850..86142+ (Gracilaria gracilis GNS1m male)
ATGCTGCCGGTATCCGACCGTCAGACCGTGCCCGAGGACGCCATCGGTAC
ATTCGGTCTCGGCCAATTCCTCGGCGGTGTTTGCCCCCAAAACATCTCAC
ACTCCGAGACCGTCAATGAGCAGGGTGTCATTCCTCACACGGTCATGGCA
ATCAACAACATGCCCTGTACCGATGACGGATCCATGGGCGTGACCCTCGA
CGCCGATACAGCTTTGGCAGGCGTTGAAGTCAGCAGCTCCACTACTCTCA
TCAACCAGTTCAAGGATGCTGGCGTGTCTGCTATCTATGGTATTGAAAAC
TCTGCTCGTGTGTGCGGCAAAAATCAACTGCCCGCAAAGACCTTGGTCAT
TATCTTCCAGCCCGTCAGCGCGGTGACTATCGGCCTGGATTCGTACTTCA
GTGGCCGTCGCTACATGATTGTTGACGATCCTAGTGTTGATGGCATTTGT
CGCTACTCCACCGAACGCCGCCCGGAACCGGAGGTGGAGGAGACTCCGAC
AGAGATGGACGAAGCCGTTATGACTCCGATGGCCACCGTGATGCCAGAAC
CGGCGCCAGTACCGGCGCCAGTACCGGCGCCAGTACCGGATACTGAGGAG
CCTGCGGTTACAACTGAGGAGCCGGTGGGTGAGACCGACGGCCCGAGTAC
ACCCGGTGTTCCGGGTGGCGTTGTTGCGCCCGACACTGACATCGGCATTA
CGGAAGGACTCACAACTGACGAGGAAGAGCCGACGGTATCGCCTGAAGAC
GACCCGATTTGCTTCCCAGCCGACGGGTCTGTGCAACTGGAGGACGGCTC
CGTTAAACGCATGGAGCAGGTGGAGATCGGAGACCGCGTGATGGTTGGCA
ACAAGCAGTTCTCCGAGGTGTTCATGTTCTCTCACCGTCTGGCTGACGTG
AAGAACACGTTTGTGAAGGTGCAGCTGGAGAGTGGACAGAGCATCGAGGC
TACGGTTGGACACTATCTGTACGTGAACGGACGCCTTGCTGCAGCGTCCA
GCGTGAAGGTGGGTGACTCGATGGAGCTGGACTCTGGAGATCGTGTGGGC
GTGTCGCAGGTGTCGCTGGTGAGTAAGAAGGGTCTGTACAACCCGCAGAC
TATGCACGGAGACATCGTGGTGAACGGCGTGAGGGCGAGTACATTCACGC
AGGCTGTGGAGGTGTGCACGGCGTCGGCATTGATGGCGCCGCTGAGGGTT
GTGTACGCGCTGTTCGGCTGGAGCGGAAGCTTCCTGGACGGCGGGCTGGA
TAGTGTAGCCAACATGCTGCCGAATGGCGCGGCGACCTTGTAG
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