Ggra9051.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9051.t1
Unique NameGgra9051.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length364
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:46570..47920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog126957.SMAR002219-PA
Preferred nameTBP
PFAMsTBP
Max annot lvl33208|Metazoa
KEGG koko:K03120
KEGG Pathwayko03022,ko05016,ko05165,ko05166,ko05168,ko05169,ko05203,map03022,map05016,map05165,map05166,map05168,map05169,map05203
GOsGO:0000120,GO:0000126,GO:0000228,GO:0000428,GO:0000785,GO:0000790,GO:0000791,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000987,GO:0000988,GO:0000989,GO:0000992,GO:0001006,GO:0001012,GO:0001016,GO:0001032,GO:0001034,GO:0001047,GO:0001067,GO:0001076,GO:0001085,GO:0001091,GO:0001092,GO:0001093,GO:0001098,GO:0001099,GO:0001103,GO:0001129,GO:0001132,GO:0001939,GO:0001940,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003677,GO:0003680,GO:0003682,GO:0003690,GO:0003700,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005667,GO:0005669,GO:0005672,GO:0005694,GO:0005719,GO:0005730,GO:0005737,GO:0006139,GO:0006351,GO:0006352,GO:0006353,GO:0006355,GO:0006357,GO:0006359,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006383,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0007275,GO:0007369,GO:0007389,GO:0008134,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009301,GO:0009304,GO:0009653,GO:0009790,GO:0009792,GO:0009880,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0016043,GO:0016070,GO:0016071,GO:0016073,GO:0016591,GO:0017162,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0019899,GO:0022607,GO:0023051,GO:0030097,GO:0030880,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031334,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0032993,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0040029,GO:0042795,GO:0042796,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043565,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044212,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044454,GO:0044464,GO:0044798,GO:0045120,GO:0045815,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046700,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048598,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051123,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0055029,GO:0060255,GO:0060260,GO:0060261,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070491,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0090576,GO:0097159,GO:0097550,GO:0097659,GO:0098781,GO:0140110,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1901796,GO:1902494,GO:1902531,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990234,GO:1990837,GO:2000112,GO:2000113,GO:2000142,GO:2000144,GO:2001141
Evalue2.27e-89
EggNOG OGsCOG2101@1|root,KOG3302@2759|Eukaryota,38BPR@33154|Opisthokonta,3BBTG@33208|Metazoa,3CX9C@33213|Bilateria,41VYQ@6656|Arthropoda
DescriptionDNA binding. It is involved in the biological process described with DNA-templated transcription, initiation
COG categoryK
BRITEko00000,ko00001,ko03000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9051Ggra9051Gracilaria gracilis GNS1m malegenetig00000176_pilon 46570..47920 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9051.t1Ggra9051.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 46570..47920 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9051.t1.stop1Ggra9051.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 46570..46572 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9051.t1.CDS1Ggra9051.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 46570..47281 -
Ggra9051.t1.CDS2Ggra9051.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000176_pilon 47352..47454 -
Ggra9051.t1.CDS3Ggra9051.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000176_pilon 47644..47920 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9051.t1.exon1Ggra9051.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 46570..47281 -
Ggra9051.t1.exon2Ggra9051.t1.exon2Gracilaria gracilis GNS1m maleexontig00000176_pilon 47352..47454 -
Ggra9051.t1.exon3Ggra9051.t1.exon3Gracilaria gracilis GNS1m maleexontig00000176_pilon 47644..47920 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9051.t1.intron1Ggra9051.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000176_pilon 47282..47351 -
Ggra9051.t1.intron2Ggra9051.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000176_pilon 47455..47643 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9051.t1.start1Ggra9051.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 47918..47920 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9051.t1 ID=Ggra9051.t1|Name=Ggra9051.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=364bp
MRGVIQTNGRHNQLRDSKTEKRPTAHYPLFATRTTVDIYHLRRFFPPRGR
VVCRRFVPSCTLSFAFARRSAASTFPFRRARRGLLRVLAGVDVVLRFRLS
CASRQPPLNLRLTASLAPLSLCSTPPSFQPNNPSETPPQSHAAAGPSTVT
PKTDNLVSQPGASTDPVKSQGGPSASGRLSHGIIPEIQNVVATTNLDVKL
DLKKIALRARNAEYNPKRFAAVIMRIREPKTTALIFSSGKIVVTGAKSER
QSSRASRKYAKIVHKLGYDDAKFKEFTVQNIVASCDVNFPVRLEGLAHAH
SQFCSYEPELFPGLIYRMIKPKIVLLIFVSGKVVLTGAKVRSDIYEAFDN
IYHVLQTFRKAKH*
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spliced messenger RNA

>Ggra9051.t1 ID=Ggra9051.t1|Name=Ggra9051.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1092bp|location=Sequence derived from alignment at tig00000176_pilon:46570..47920- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAGGCGTGATTCAAACTAACGGCCGCCACAACCAGCTCCGGGATTC
AAAAACGGAAAAGCGCCCGACAGCTCACTACCCTTTATTTGCAACGCGCA
CTACAGTCGATATCTACCACCTTCGACGCTTCTTCCCGCCCCGCGGTCGC
GTCGTCTGCAGACGCTTCGTACCATCGTGCACGCTCTCGTTTGCGTTCGC
TCGCAGATCCGCCGCGTCCACTTTCCCTTTCCGACGCGCTCGCCGCGGCC
TTCTTCGCGTGCTTGCTGGTGTAGACGTCGTTCTCCGGTTTCGCCTCTCC
TGCGCTTCGAGGCAGCCTCCCTTGAATCTCCGTCTGACGGCCTCCCTCGC
GCCGCTTTCACTCTGCTCCACCCCACCCAGCTTTCAACCTAACAATCCCT
CCGAAACCCCACCCCAGTCCCACGCTGCCGCTGGTCCCTCCACCGTAACC
CCGAAAACGGACAACCTCGTGTCGCAACCAGGTGCGTCCACAGACCCTGT
CAAATCACAAGGAGGTCCCAGCGCCAGCGGCCGTCTGAGTCACGGTATAA
TCCCCGAGATTCAGAATGTGGTGGCAACGACCAACTTGGATGTAAAACTC
GACCTCAAGAAGATTGCCTTGCGCGCCAGAAACGCCGAGTACAATCCAAA
GCGTTTTGCCGCCGTTATCATGCGAATTCGCGAACCTAAGACCACAGCCT
TGATTTTCTCCTCGGGCAAAATAGTTGTTACTGGAGCCAAGTCTGAACGA
CAGTCAAGTCGAGCATCACGAAAATATGCCAAGATTGTTCACAAACTTGG
TTATGATGACGCCAAGTTTAAGGAGTTCACTGTGCAAAACATCGTTGCCA
GTTGCGATGTAAACTTCCCCGTTCGTTTGGAGGGCTTGGCCCATGCCCAC
AGCCAGTTCTGCAGTTATGAACCAGAACTTTTTCCCGGCCTCATCTATAG
GATGATCAAGCCCAAGATTGTCTTACTCATCTTTGTTTCGGGCAAGGTGG
TTCTCACCGGCGCCAAGGTTCGTTCCGACATTTATGAAGCTTTCGACAAC
ATATATCATGTGCTTCAAACATTCCGCAAAGCGAAACACTAG
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protein sequence of Ggra9051.t1

>Ggra9051.t1 ID=Ggra9051.t1|Name=Ggra9051.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=364bp
MRGVIQTNGRHNQLRDSKTEKRPTAHYPLFATRTTVDIYHLRRFFPPRGR
VVCRRFVPSCTLSFAFARRSAASTFPFRRARRGLLRVLAGVDVVLRFRLS
CASRQPPLNLRLTASLAPLSLCSTPPSFQPNNPSETPPQSHAAAGPSTVT
PKTDNLVSQPGASTDPVKSQGGPSASGRLSHGIIPEIQNVVATTNLDVKL
DLKKIALRARNAEYNPKRFAAVIMRIREPKTTALIFSSGKIVVTGAKSER
QSSRASRKYAKIVHKLGYDDAKFKEFTVQNIVASCDVNFPVRLEGLAHAH
SQFCSYEPELFPGLIYRMIKPKIVLLIFVSGKVVLTGAKVRSDIYEAFDN
IYHVLQTFRKAKH*
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mRNA from alignment at tig00000176_pilon:46570..47920-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9051.t1 ID=Ggra9051.t1|Name=Ggra9051.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1351bp|location=Sequence derived from alignment at tig00000176_pilon:46570..47920- (Gracilaria gracilis GNS1m male)
ATGAGAGGCGTGATTCAAACTAACGGCCGCCACAACCAGCTCCGGGATTC
AAAAACGGAAAAGCGCCCGACAGCTCACTACCCTTTATTTGCAACGCGCA
CTACAGTCGATATCTACCACCTTCGACGCTTCTTCCCGCCCCGCGGTCGC
GTCGTCTGCAGACGCTTCGTACCATCGTGCACGCTCTCGTTTGCGTTCGC
TCGCAGATCCGCCGCGTCCACTTTCCCTTTCCGACGCGCTCGCCGCGGCC
TTCTTCGCGTGCTTGCTGGTGTAGACGGTGAGTTGTTGCTTGCGCACGCC
TTCCTGTGCCCCGCCTCAACTGGCGCTTGTTTCGCCCTCCAGCCTGCGTC
GCGTTTGCGCGCTTTGCTACACTTCGTTACGTTTCAAGTGCCTTGACTGA
CCTTCTTCTCCGCCCTTCCTTCGCTTCCACGCGGCTGCGTTGCGCTCCGT
TACATACCATGTGCAGTCGTTCTCCGGTTTCGCCTCTCCTGCGCTTCGAG
GCAGCCTCCCTTGAATCTCCGTCTGACGGCCTCCCTCGCGCCGCTTTCAC
TCTGCTCCACCCCACCCAGGTGCGGCGGTGAACTGTACCACTTGCGCTAA
TCCCCAAAGCCTAACATCTACCATGCAGGTCCAACCCAGCTTTCAACCTA
ACAATCCCTCCGAAACCCCACCCCAGTCCCACGCTGCCGCTGGTCCCTCC
ACCGTAACCCCGAAAACGGACAACCTCGTGTCGCAACCAGGTGCGTCCAC
AGACCCTGTCAAATCACAAGGAGGTCCCAGCGCCAGCGGCCGTCTGAGTC
ACGGTATAATCCCCGAGATTCAGAATGTGGTGGCAACGACCAACTTGGAT
GTAAAACTCGACCTCAAGAAGATTGCCTTGCGCGCCAGAAACGCCGAGTA
CAATCCAAAGCGTTTTGCCGCCGTTATCATGCGAATTCGCGAACCTAAGA
CCACAGCCTTGATTTTCTCCTCGGGCAAAATAGTTGTTACTGGAGCCAAG
TCTGAACGACAGTCAAGTCGAGCATCACGAAAATATGCCAAGATTGTTCA
CAAACTTGGTTATGATGACGCCAAGTTTAAGGAGTTCACTGTGCAAAACA
TCGTTGCCAGTTGCGATGTAAACTTCCCCGTTCGTTTGGAGGGCTTGGCC
CATGCCCACAGCCAGTTCTGCAGTTATGAACCAGAACTTTTTCCCGGCCT
CATCTATAGGATGATCAAGCCCAAGATTGTCTTACTCATCTTTGTTTCGG
GCAAGGTGGTTCTCACCGGCGCCAAGGTTCGTTCCGACATTTATGAAGCT
TTCGACAACATATATCATGTGCTTCAAACATTCCGCAAAGCGAAACACTA
G
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Coding sequence (CDS) from alignment at tig00000176_pilon:46570..47920-

>Ggra9051.t1 ID=Ggra9051.t1|Name=Ggra9051.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1092bp|location=Sequence derived from alignment at tig00000176_pilon:46570..47920- (Gracilaria gracilis GNS1m male)
ATGAGAGGCGTGATTCAAACTAACGGCCGCCACAACCAGCTCCGGGATTC
AAAAACGGAAAAGCGCCCGACAGCTCACTACCCTTTATTTGCAACGCGCA
CTACAGTCGATATCTACCACCTTCGACGCTTCTTCCCGCCCCGCGGTCGC
GTCGTCTGCAGACGCTTCGTACCATCGTGCACGCTCTCGTTTGCGTTCGC
TCGCAGATCCGCCGCGTCCACTTTCCCTTTCCGACGCGCTCGCCGCGGCC
TTCTTCGCGTGCTTGCTGGTGTAGACGTCGTTCTCCGGTTTCGCCTCTCC
TGCGCTTCGAGGCAGCCTCCCTTGAATCTCCGTCTGACGGCCTCCCTCGC
GCCGCTTTCACTCTGCTCCACCCCACCCAGCTTTCAACCTAACAATCCCT
CCGAAACCCCACCCCAGTCCCACGCTGCCGCTGGTCCCTCCACCGTAACC
CCGAAAACGGACAACCTCGTGTCGCAACCAGGTGCGTCCACAGACCCTGT
CAAATCACAAGGAGGTCCCAGCGCCAGCGGCCGTCTGAGTCACGGTATAA
TCCCCGAGATTCAGAATGTGGTGGCAACGACCAACTTGGATGTAAAACTC
GACCTCAAGAAGATTGCCTTGCGCGCCAGAAACGCCGAGTACAATCCAAA
GCGTTTTGCCGCCGTTATCATGCGAATTCGCGAACCTAAGACCACAGCCT
TGATTTTCTCCTCGGGCAAAATAGTTGTTACTGGAGCCAAGTCTGAACGA
CAGTCAAGTCGAGCATCACGAAAATATGCCAAGATTGTTCACAAACTTGG
TTATGATGACGCCAAGTTTAAGGAGTTCACTGTGCAAAACATCGTTGCCA
GTTGCGATGTAAACTTCCCCGTTCGTTTGGAGGGCTTGGCCCATGCCCAC
AGCCAGTTCTGCAGTTATGAACCAGAACTTTTTCCCGGCCTCATCTATAG
GATGATCAAGCCCAAGATTGTCTTACTCATCTTTGTTTCGGGCAAGGTGG
TTCTCACCGGCGCCAAGGTTCGTTCCGACATTTATGAAGCTTTCGACAAC
ATATATCATGTGCTTCAAACATTCCGCAAAGCGAAACACTAG
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